66 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Shel_00010  CDS  NC_013165  42  1547  1506  chromosomal replication initiator protein DnaA  YP_003142427  unclonable  1.75242e-05  decreased coverage  7.4483e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_00020  CDS  NC_013165  1741  2838  1098  DNA polymerase III, beta subunit  YP_003142428  hitchhiker  0.000592113  decreased coverage  5.99685e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_00030  CDS  NC_013165  2840  3970  1131  recF protein  YP_003142429  hitchhiker  0.000612951  decreased coverage  1.32668e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_00330  CDS  NC_013165  42176  42898  723  response regulator with CheY-like receiver domain and winged-helix DNA-binding domain  YP_003142457  decreased coverage  0.00972196  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_01150  CDS  NC_013165  145516  147090  1575  PAS domain-containing protein  YP_003142538  decreased coverage  0.00148391  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_01700  CDS  NC_013165  207669  209420  1752  arginyl-tRNA synthetase  YP_003142590  decreased coverage  0.000411406  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_01950  CDS  NC_013165  241152  242702  1551  cell envelope-related function transcriptional attenuator common domain protein  YP_003142614  decreased coverage  0.000132864  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_02900  CDS  NC_013165  348708  349598  891  hypothetical protein  YP_003142707  decreased coverage  0.00646507  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_02910  CDS  NC_013165  349608  351692  2085  conserved hypothetical protein TIGR02688  YP_003142708  decreased coverage  0.000891633  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_02920  CDS  NC_013165  351707  352030  324  hypothetical protein  YP_003142709  decreased coverage  0.00324963  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_03250  CDS  NC_013165  393966  394826  861  transposase  YP_003142741  decreased coverage  0.00459877  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_04310  CDS  NC_013165  514761  517184  2424  anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family  YP_003142841  decreased coverage  0.00139341  normal  0.037099  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_04650  CDS  NC_013165  549981  551471  1491  sodium/panthothenate symporter  YP_003142874  decreased coverage  0.00393427  hitchhiker  8.95838e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_04660  CDS  NC_013165  551688  552122  435  ribosomal protein L31  YP_003142875  decreased coverage  0.000382809  hitchhiker  4.89926e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_07020  CDS  NC_013165  818645  819448  804  conserved hypothetical protein TIGR01033  YP_003143110  decreased coverage  0.000405153  normal  0.306564  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_07030  CDS  NC_013165  819692  820189  498  crossover junction endodeoxyribonuclease RuvC  YP_003143111  decreased coverage  0.000194314  normal  0.296999  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_08210  CDS  NC_013165  953537  953830  294  HNH endonuclease  YP_003143226  decreased coverage  0.00377503  hitchhiker  0.00349678  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_08220  CDS  NC_013165  953833  954153  321  hypothetical protein  YP_003143227  decreased coverage  0.00422276  hitchhiker  0.00352064  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_08230  CDS  NC_013165  954173  955384  1212  phage major capsid protein, HK97 family  YP_003143228  decreased coverage  0.0061868  hitchhiker  0.00502474  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_10700  CDS  NC_013165  1223971  1225311  1341  MiaB-like tRNA modifying enzyme YliG, TIGR01125  YP_003143454  decreased coverage  0.00016615  unclonable  1.72933e-09  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_10710  CDS  NC_013165  1225304  1226419  1116  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_003143455  decreased coverage  0.00012453  unclonable  1.62574e-09  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_11820  CDS  NC_013165  1365410  1366267  858  dTDP-4-dehydrorhamnose reductase  YP_003143563  normal  decreased coverage  0.00376566  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_12870  CDS  NC_013165  1476812  1478398  1587  hypothetical protein  YP_003143663  decreased coverage  0.00470527  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_14640  CDS  NC_013165  1680715  1682328  1614  glycosyl/glycerophosphate transferase, teichoic acid biosynthesis  YP_003143833  decreased coverage  0.00366623  decreased coverage  5.65277e-07  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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Shel_14660  CDS  NC_013165  1683543  1683926  384  Glycerol-3-phosphate cytidylyltransferase  YP_003143835  normal  0.0290332  decreased coverage  2.46532e-07  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_14670  CDS  NC_013165  1684020  1685195  1176  UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase  YP_003143836  normal  0.0872844  decreased coverage  3.74023e-07  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_14900  CDS  NC_013165  1713290  1714015  726  hypothetical protein  YP_003143859  decreased coverage  0.000192579  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_15200  CDS  NC_013165  1743672  1744265  594  translation initiation factor 3  YP_003143889  decreased coverage  2.8162e-05  normal  0.0802518  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_15350  CDS  NC_013165  1756943  1758247  1305  predicted DNA-binding protein with the helix-hairpin-helix motif  YP_003143904  decreased coverage  0.000164569  normal  0.0902203  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_15900  CDS  NC_013165  1790384  1790791  408  hypothetical protein  YP_003143958  decreased coverage  0.000215744  hitchhiker  1.99093e-06  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_15910  CDS  NC_013165  1790803  1790964  162  hypothetical protein  YP_003143959  decreased coverage  0.000116064  hitchhiker  1.70201e-06  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_15920  CDS  NC_013165  1790961  1791161  201  hypothetical protein  YP_003143960  decreased coverage  0.000116064  hitchhiker  1.80868e-06  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16050  CDS  NC_013165  1802865  1803878  1014  aspartate semialdehyde dehydrogenase  YP_003143973  decreased coverage  0.000391441  hitchhiker  3.05241e-07  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16170  CDS  NC_013165  1819471  1820973  1503  uncharacterized PSP1-like protein  YP_003143985  normal  decreased coverage  2.03324e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16180  CDS  NC_013165  1820966  1822087  1122  DNA polymerase III, gamma/tau subunit  YP_003143986  normal  decreased coverage  1.4932e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16190  CDS  NC_013165  1822087  1822791  705  thymidylate kinase  YP_003143987  normal  decreased coverage  1.39363e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16200  CDS  NC_013165  1822784  1823314  531  tartrate dehydratase beta subunit/fumarate hydratase class I  YP_003143988  normal  decreased coverage  1.26622e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16210  CDS  NC_013165  1823311  1824189  879  hydro-lyase, Fe-S type, tartrate/fumarate subfamily  YP_003143989  normal  decreased coverage  1.47794e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16220  CDS  NC_013165  1824399  1824686  288  LSU ribosomal protein L23P  YP_003143990  normal  0.491689  decreased coverage  1.09599e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16230  CDS  NC_013165  1824687  1825310  624  ribosomal protein L4  YP_003143991  normal  0.308573  decreased coverage  1.46284e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16260  CDS  NC_013165  1826306  1828417  2112  translation elongation factor 2 (EF-2/EF-G)  YP_003143994  decreased coverage  0.000508186  hitchhiker  1.782e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16270  CDS  NC_013165  1828436  1828906  471  SSU ribosomal protein S7P  YP_003143995  decreased coverage  1.89839e-05  hitchhiker  4.25179e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16290  CDS  NC_013165  1829760  1830206  447  universal stress protein UspA-like protein  YP_003143997  decreased coverage  1.27865e-05  hitchhiker  3.72029e-05  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_16300  CDS  NC_013165  1830343  1831134  792  pyrroline-5-carboxylate reductase  YP_003143998  decreased coverage  3.4622e-05  hitchhiker  0.000154585  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_19710  CDS  NC_013165  2205629  2206579  951  DNA-directed RNA polymerase subunit alpha  YP_003144334  decreased coverage  0.00120516  normal  0.467008  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_19720  CDS  NC_013165  2206616  2207212  597  SSU ribosomal protein S4P  YP_003144335  decreased coverage  0.000575799  normal  0.771365  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_19730  CDS  NC_013165  2207234  2207629  396  SSU ribosomal protein S11P  YP_003144336  decreased coverage  0.000382809  normal  0.755388  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_20190  CDS  NC_013165  2251681  2252115  435  hypothetical protein  YP_003144382  decreased coverage  0.00873639  normal  0.105252  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_21340  CDS  NC_013165  2368611  2369996  1386  SNF family Na+-dependent transporter  YP_003144493  decreased coverage  0.00519934  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_21930  CDS  NC_013165  2431940  2432899  960  ribose-phosphate pyrophosphokinase  YP_003144552  normal  decreased coverage  0.00246187  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_21940  CDS  NC_013165  2432993  2434405  1413  UDP-N-acetylglucosamine pyrophosphorylase /glucosamine-1-phosphate N-acetyltransferase  YP_003144553  normal  decreased coverage  0.00311649  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_21960  CDS  NC_013165  2436161  2436964  804  uncharacterized membrane protein  YP_003144555  hitchhiker  0.00559972  decreased coverage  0.002494  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22000  CDS  NC_013165  2439816  2440886  1071  N-acetyl-gamma-glutamyl-phosphate reductase, common form  YP_003144559  hitchhiker  0.00250125  decreased coverage  0.0027226  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22010  CDS  NC_013165  2440883  2442181  1299  glutamate N-acetyltransferase/amino-acid acetyltransferase  YP_003144560  normal  0.162548  decreased coverage  0.00277357  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22020  CDS  NC_013165  2442218  2443210  993  N-acetylglutamate kinase  YP_003144561  normal  0.869961  decreased coverage  0.00246187  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22030  CDS  NC_013165  2443232  2444440  1209  ornithine/acetylornithine aminotransferase  YP_003144562  normal  decreased coverage  0.00254086  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22100  CDS  NC_013165  2447989  2448765  777  hypothetical protein  YP_003144569  normal  decreased coverage  0.00255841  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_22180  CDS  NC_013165  2454883  2456181  1299  DNA repair nucleotidyltransferase/DNA polymerase  YP_003144577  decreased coverage  0.000141857  normal  0.0200421  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_23440  CDS  NC_013165  2590806  2591636  831  LSU ribosomal protein L2P  YP_003144702  unclonable  5.61637e-06  decreased coverage  1.03379e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_23450  CDS  NC_013165  2592082  2594595  2514  topoisomerase IA  YP_003144703  unclonable  0.000217154  decreased coverage  2.85044e-08  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_23700  CDS  NC_013165  2626270  2627328  1059  hypothetical protein  YP_003144728  decreased coverage  6.60407e-05  normal  0.616861  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_23710  CDS  NC_013165  2627349  2628125  777  molybdopterin/thiamine biosynthesis dinucleotide-utilizing protein  YP_003144729  decreased coverage  3.94678e-05  normal  0.987322  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_26350  CDS  NC_013165  2909047  2911431  2385  hypothetical protein  YP_003144986  decreased coverage  0.00144555  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_27530  CDS  NC_013165  3049009  3051018  2010  predicted membrane protein  YP_003145100  decreased coverage  0.00352231  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_27640  CDS  NC_013165  3061632  3062663  1032  hypothetical protein  YP_003145110  decreased coverage  0.000690956  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
-
 
Shel_27920  CDS  NC_013165  3092412  3092705  294  ribosomal protein S6  YP_003145134  decreased coverage  6.27266e-05  normal  Slackia heliotrinireducens DSM 20476  Bacteria 
 
 
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