90 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bcav_0219  CDS  NC_012669  232997  234799  1803  Citrate transporter  YP_002880246  normal  decreased coverage  0.000273503  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0275  CDS  NC_012669  298427  299377  951  Inosine/uridine-preferring nucleoside hydrolase  YP_002880302  hitchhiker  0.000142463  decreased coverage  5.59143e-07  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0461  CDS  NC_012669  513307  513858  552  hypothetical protein  YP_002880486  normal  0.0765077  decreased coverage  0.00720616  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0468  CDS  NC_012669  522426  522728  303  hypothetical protein  YP_002880493  decreased coverage  0.00734316  normal  0.157634  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0511  CDS  NC_012669  569712  569951  240  domain of unknown function DUF1737  YP_002880536  decreased coverage  0.00417633  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0512  CDS  NC_012669  569948  570406  459  Rhodanese domain protein  YP_002880537  decreased coverage  0.00637526  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0514  CDS  NC_012669  571680  572102  423  protein of unknown function DUF307  YP_002880539  decreased coverage  0.00567512  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0515  CDS  NC_012669  572186  572821  636  uracil phosphoribosyltransferase  YP_002880540  decreased coverage  0.00743886  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0801  CDS  NC_012669  894177  895136  960  binding-protein-dependent transport systems inner membrane component  YP_002880824  normal  0.836257  decreased coverage  0.00115511  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0848  CDS  NC_012669  947253  947636  384  cold-shock DNA-binding domain protein  YP_002880871  normal  0.433224  decreased coverage  0.00674689  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0849  CDS  NC_012669  947656  948567  912  hypothetical protein  YP_002880872  normal  0.478547  decreased coverage  0.00865222  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0851  CDS  NC_012669  951722  952327  606  hypothetical protein  YP_002880874  normal  decreased coverage  0.00740746  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0877  CDS  NC_012669  977091  978191  1101  rhs protein  YP_002880900  decreased coverage  5.4215e-05  normal  0.085728  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_0991  CDS  NC_012669  1123915  1125612  1698  hypothetical protein  YP_002881014  normal  0.919297  decreased coverage  0.0016309  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1177  CDS  NC_012669  1325531  1327798  2268  hypothetical protein  YP_002881199  decreased coverage  0.000297684  normal  0.911119  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1192  CDS  NC_012669  1344288  1346849  2562  glycosyl transferase family 2  YP_002881214  normal  decreased coverage  0.00970653  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1390  CDS  NC_012669  1582750  1583637  888  ABC-3 protein  YP_002881411  decreased coverage  0.0078855  normal  0.217794  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1391  CDS  NC_012669  1583634  1584350  717  iron (metal) dependent repressor, DtxR family  YP_002881412  decreased coverage  0.00204133  normal  0.214261  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1534  CDS  NC_012669  1762164  1763474  1311  extracellular solute-binding protein family 1  YP_002881552  normal  0.191711  decreased coverage  0.00957964  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1535  CDS  NC_012669  1763604  1765001  1398  transcriptional regulator, LacI family  YP_002881553  normal  0.38669  decreased coverage  0.00974115  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1760  CDS  NC_012669  2018582  2019583  1002  ATPase associated with various cellular activities AAA_3  YP_002881778  decreased coverage  0.00353191  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1778  CDS  NC_012669  2038091  2038861  771  hypothetical protein  YP_002881796  decreased coverage  0.00279828  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1813  CDS  NC_012669  2076073  2077116  1044  Abortive infection protein  YP_002881831  normal  0.104964  decreased coverage  0.0023677  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1814  CDS  NC_012669  2077113  2077808  696  hypothetical protein  YP_002881832  normal  0.132744  decreased coverage  0.00221314  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1815  CDS  NC_012669  2078030  2078503  474  integral-membrane protein  YP_002881833  normal  0.295351  decreased coverage  0.00207179  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1816  CDS  NC_012669  2078754  2079755  1002  transcriptional regulator, AraC family  YP_002881834  normal  decreased coverage  0.00100464  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1827  CDS  NC_012669  2087528  2088856  1329  acyltransferase 3  YP_002881845  decreased coverage  0.00111399  normal  0.153762  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1867  CDS  NC_012669  2131214  2132632  1419  fumarate reductase/succinate dehydrogenase flavoprotein domain protein  YP_002881885  decreased coverage  0.00543949  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1895  CDS  NC_012669  2158567  2158848  282  transcriptional regulator, AsnC family  YP_002881913  normal  0.0969365  decreased coverage  8.83258e-07  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1897  CDS  NC_012669  2160593  2161195  603  transcriptional regulator, TetR family  YP_002881915  normal  0.0417503  decreased coverage  8.83258e-07  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1898  CDS  NC_012669  2161192  2162415  1224  alanine racemase domain protein  YP_002881916  normal  0.107111  decreased coverage  1.53427e-06  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1899  CDS  NC_012669  2162412  2163728  1317  FAD-linked oxidoreductase  YP_002881917  normal  0.0587039  decreased coverage  1.56043e-06  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1957  CDS  NC_012669  2229798  2231867  2070  Amylo-alpha-16-glucosidase  YP_002881974  normal  0.705949  decreased coverage  1.63059e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1959  CDS  NC_012669  2233948  2234664  717  hypothetical protein  YP_002881976  normal  decreased coverage  1.68235e-06  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1960  CDS  NC_012669  2234728  2236851  2124  3-hydroxyacyl-CoA dehydrogenase NAD-binding  YP_002881977  normal  0.502183  decreased coverage  1.70947e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_1968  CDS  NC_012669  2243394  2244458  1065  AFG1-family ATPase  YP_002881985  normal  0.486857  decreased coverage  1.16257e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2042  CDS  NC_012669  2322950  2323492  543  guanylate kinase  YP_002882059  normal  0.677493  decreased coverage  0.00281662  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2043  CDS  NC_012669  2323532  2323804  273  DNA-directed RNA polymerase subunit omega  YP_002882060  normal  0.529768  decreased coverage  0.00243953  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2044  CDS  NC_012669  2323813  2325078  1266  phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase  YP_002882061  normal  0.578758  decreased coverage  0.0035121  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2045  CDS  NC_012669  2325075  2326298  1224  S-adenosylmethionine synthetase  YP_002882062  normal  decreased coverage  0.00317671  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2077  CDS  NC_012669  2355304  2355750  447  type VI secretion system effector, Hcp1 family  YP_002882094  decreased coverage  0.00363318  normal  0.388001  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2143  CDS  NC_012669  2414348  2415103  756  short-chain dehydrogenase/reductase SDR  YP_002882157  decreased coverage  0.00162277  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2144  CDS  NC_012669  2415182  2416165  984  dihydrodipicolinate synthase  YP_002882158  decreased coverage  0.00221445  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2348  CDS  NC_012669  2629268  2629900  633  NUDIX hydrolase  YP_002882360  decreased coverage  0.00912328  normal  0.0106592  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2349  CDS  NC_012669  2629897  2631600  1704  CTP synthetase  YP_002882361  decreased coverage  0.00181138  normal  0.0174696  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2362  CDS  NC_012669  2651018  2652286  1269  tyrosyl-tRNA synthetase  YP_002882374  normal  0.587755  decreased coverage  0.00168263  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2363  CDS  NC_012669  2652405  2653064  660  DNA-3-methyladenine glycosylase  YP_002882375  normal  0.701689  decreased coverage  0.00325367  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2364  CDS  NC_012669  2653108  2653845  738  Methyltransferase type 11  YP_002882376  normal  0.695358  decreased coverage  0.00329401  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2365  CDS  NC_012669  2653878  2654468  591  hypothetical protein  YP_002882377  normal  0.651738  decreased coverage  0.00293755  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2366  CDS  NC_012669  2654479  2655909  1431  argininosuccinate lyase  YP_002882378  normal  0.23929  decreased coverage  0.0035121  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2614  CDS  NC_012669  2908130  2909053  924  DNA glycosylase/AP lyase, H2TH DNA-binding  YP_002882621  decreased coverage  0.00631248  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2796  CDS  NC_012669  3116014  3117159  1146  Uroporphyrinogen III synthase HEM4  YP_002882803  normal  0.0507836  decreased coverage  0.000543328  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2797  CDS  NC_012669  3117156  3118367  1212  uroporphyrin-III C-methyltransferase  YP_002882804  normal  0.334066  decreased coverage  0.000494849  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2798  CDS  NC_012669  3118364  3118762  399  nitrite reductase (NAD(P)H), small subunit  YP_002882805  normal  0.147799  decreased coverage  0.000360989  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2799  CDS  NC_012669  3118759  3121407  2649  nitrite reductase (NAD(P)H), large subunit  YP_002882806  normal  0.606225  decreased coverage  0.000990143  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2800  CDS  NC_012669  3121520  3123145  1626  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_002882807  normal  decreased coverage  0.000731834  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2801  CDS  NC_012669  3123142  3125289  2148  molybdopterin oxidoreductase  YP_002882808  normal  decreased coverage  0.000856519  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2834  CDS  NC_012669  3163968  3165326  1359  extracellular solute-binding protein family 1  YP_002882841  decreased coverage  0.00451533  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2843  CDS  NC_012669  3176332  3177915  1584  metallophosphoesterase  YP_002882850  decreased coverage  0.00214985  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2885  CDS  NC_012669  3219056  3221998  2943  protein of unknown function UPF0182  YP_002882892  normal  decreased coverage  0.00214299  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2892  CDS  NC_012669  3227896  3229218  1323  hypothetical protein  YP_002882899  decreased coverage  0.001501  normal  0.0367293  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2893  CDS  NC_012669  3229386  3229616  231  hypothetical protein  YP_002882900  decreased coverage  0.00307542  normal  0.0460373  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2894  CDS  NC_012669  3229808  3230785  978  hypothetical protein  YP_002882901  decreased coverage  0.00326074  normal  0.0557352  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2936  CDS  NC_012669  3277332  3278450  1119  adenosine deaminase  YP_002882943  decreased coverage  0.000510583  hitchhiker  0.00313698  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2951  CDS  NC_012669  3292795  3293253  459  succinate dehydrogenase cytochrome b556 subunit  YP_002882958  normal  decreased coverage  0.000110857  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2952  CDS  NC_012669  3293291  3295093  1803  succinate dehydrogenase flavoprotein subunit  YP_002882959  normal  0.090106  decreased coverage  0.000187391  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2953  CDS  NC_012669  3295093  3295857  765  succinate dehydrogenase and fumarate reductase iron-sulfur protein  YP_002882960  normal  0.0477961  decreased coverage  0.000138203  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2954  CDS  NC_012669  3295949  3296716  768  aminoglycoside phosphotransferase  YP_002882961  hitchhiker  0.00316699  decreased coverage  0.00012693  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2955  CDS  NC_012669  3296727  3297896  1170  ribonuclease BN  YP_002882962  hitchhiker  0.00451533  decreased coverage  0.000148448  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2957  CDS  NC_012669  3298646  3299680  1035  tryptophanyl-tRNA synthetase  YP_002882964  decreased coverage  0.0001475  decreased coverage  0.00015273  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2958  CDS  NC_012669  3300893  3301681  789  transcriptional regulator, DeoR family  YP_002882965  hitchhiker  0.00162277  decreased coverage  0.000126005  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2959  CDS  NC_012669  3301678  3302838  1161  galactose-1-phosphate uridylyltransferase  YP_002882966  hitchhiker  0.00353191  decreased coverage  0.000145306  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_2960  CDS  NC_012669  3302835  3304058  1224  galactokinase  YP_002882967  normal  0.0133618  decreased coverage  0.000169773  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3013  CDS  NC_012669  3362259  3362894  636  phosphoribosylglycinamide formyltransferase  YP_002883020  decreased coverage  0.000892633  hitchhiker  0.00295616  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3027  CDS  NC_012669  3376804  3378153  1350  histidine kinase  YP_002883033  normal  0.256047  decreased coverage  4.13704e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3028  CDS  NC_012669  3378150  3378827  678  two component transcriptional regulator, LuxR family  YP_002883034  normal  0.211566  decreased coverage  2.66978e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3029  CDS  NC_012669  3378935  3379852  918  ABC transporter related  YP_002883035  normal  decreased coverage  3.34829e-05  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3224  CDS  NC_012669  3581823  3583142  1320  NADH-quinone oxidoreductase, F subunit  YP_002883230  normal  decreased coverage  0.00762011  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3225  CDS  NC_012669  3583142  3583993  852  NADH dehydrogenase subunit E  YP_002883231  normal  decreased coverage  0.0065484  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3226  CDS  NC_012669  3583990  3585327  1338  NADH dehydrogenase subunit D  YP_002883232  normal  decreased coverage  0.00372602  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3294  CDS  NC_012669  3651432  3652370  939  hypothetical protein  YP_002883299  normal  0.317719  decreased coverage  0.000948071  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3295  CDS  NC_012669  3652537  3653529  993  putative integral membrane protein  YP_002883300  normal  0.179488  decreased coverage  0.00096704  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3296  CDS  NC_012669  3653554  3653862  309  hypothetical protein  YP_002883301  normal  0.0390754  decreased coverage  0.000749117  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3297  CDS  NC_012669  3653995  3654690  696  ATP-binding protein  YP_002883302  normal  0.187999  decreased coverage  0.000867237  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3298  CDS  NC_012669  3654671  3656716  2046  Beta-galactosidase  YP_002883303  normal  0.452192  decreased coverage  0.00169341  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3624  CDS  NC_012669  4034353  4035519  1167  L-rhamnose isomerase  YP_002883628  decreased coverage  0.000224876  normal  0.0801622  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3625  CDS  NC_012669  4035620  4037683  2064  short chain dehydrogenase  YP_002883629  decreased coverage  0.000228222  normal  0.0356352  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_3733  CDS  NC_012669  4150570  4151634  1065  hypothetical protein  YP_002883737  normal  decreased coverage  0.00753481  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_R0027  tRNA  NC_012669  2077865  2077941  77  tRNA-Val    normal  0.20425  decreased coverage  0.00178196  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
Bcav_R0052  tRNA  NC_012669  3842035  3842107  73  tRNA-Lys    decreased coverage  0.00451964  normal  Beutenbergia cavernae DSM 12333  Bacteria 
 
 
-
 
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