141 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
GWCH70_0001  CDS  NC_012793  27  1379  1353  chromosomal replication initiation protein  YP_002948209  decreased coverage  4.47845e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0002  CDS  NC_012793  1545  2681  1137  DNA polymerase III subunit beta  YP_002948210  decreased coverage  1.67002e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0041  CDS  NC_012793  51905  52774  870  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_002948249  decreased coverage  0.000358804  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0079  CDS  NC_012793  91475  92662  1188  transposase IS4 family protein  YP_002948285  decreased coverage  0.000349204  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0080  CDS  NC_012793  105679  106140  462  transcriptional repressor, CtsR  YP_002948286  decreased coverage  9.01486e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0152  CDS  NC_012793  162851  163612  762  polysaccharide deacetylase family sporulation protein PdaB  YP_002948357  decreased coverage  1.20528e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0154  CDS  NC_012793  172631  173182  552  RNA polymerase sigma factor SigW  YP_002948359  decreased coverage  5.64665e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0155  CDS  NC_012793  173196  173807  612  putative transmembrane anti-sigma factor  YP_002948360  decreased coverage  6.7167e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0206  CDS  NC_012793  224745  226145  1401  DEAD/DEAH box helicase domain protein  YP_002948403  decreased coverage  0.00471201  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0246  CDS  NC_012793  271442  272815  1374  transposase IS4 family protein  YP_002948442  decreased coverage  7.88871e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0255  CDS  NC_012793  289077  290372  1296  adenylosuccinate lyase  YP_002948450  decreased coverage  0.00422824  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0266  CDS  NC_012793  300636  302381  1746  Adenine deaminase  YP_002948461  decreased coverage  2.08487e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0291  CDS  NC_012793  331164  332546  1383  aminotransferase class-III  YP_002948484  decreased coverage  8.19224e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0292  CDS  NC_012793  332590  333438  849  transcriptional regulator, RpiR family  YP_002948485  decreased coverage  1.28623e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0323  CDS  NC_012793  373436  374509  1074  spermidine/putrescine ABC transporter ATPase subunit  YP_002948516  decreased coverage  3.45783e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0335  CDS  NC_012793  385257  386183  927  putative lipid kinase  YP_002948527  decreased coverage  6.03525e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0351  CDS  NC_012793  398595  400550  1956  group-specific protein  YP_002948542  decreased coverage  0.00317496  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0386  CDS  NC_012793  444927  445118  192  hypothetical protein  YP_002948573  decreased coverage  0.00058247  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0387  CDS  NC_012793  445134  445979  846  band 7 protein  YP_002948574  decreased coverage  0.003023  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0431  CDS  NC_012793  486662  488002  1341  potassium uptake protein, TrkH family  YP_002948616  decreased coverage  1.54787e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0519  CDS  NC_012793  589517  590344  828  2,5-didehydrogluconate reductase  YP_002948694  decreased coverage  0.00901409  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0564  CDS  NC_012793  629276  629572  297  Rhodanese domain protein  YP_002948731  decreased coverage  3.75905e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0565  CDS  NC_012793  629600  630169  570  SirA family protein  YP_002948732  decreased coverage  9.44688e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0616  CDS  NC_012793  681160  682428  1269  protein of unknown function DUF21  YP_002948777  decreased coverage  8.39014e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0664  CDS  NC_012793  726363  727049  687  Zn-dependent protease with chaperone function  YP_002948823  decreased coverage  8.0571e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0665  CDS  NC_012793  727161  728447  1287  isocitrate lyase  YP_002948824  decreased coverage  4.67053e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0666  CDS  NC_012793  728707  728913  207  hypothetical protein  YP_002948825  decreased coverage  4.03858e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0667  CDS  NC_012793  729132  729674  543  ComK family protein  YP_002948826  decreased coverage  1.21141e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0673  CDS  NC_012793  739981  743331  3351  SMC domain protein  YP_002948832  decreased coverage  0.00700495  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0749  CDS  NC_012793  825318  826250  933  3-oxoacyl-(acyl carrier protein) synthase III  YP_002948901  decreased coverage  2.57819e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0750  CDS  NC_012793  826286  827527  1242  3-oxoacyl-(acyl carrier protein) synthase II  YP_002948902  decreased coverage  6.85785e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0822  CDS  NC_012793  887355  888107  753  protein of unknown function DUF1212  YP_002948970  decreased coverage  3.71019e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0889  CDS  NC_012793  950861  953038  2178  ATPase AAA-2 domain protein  YP_002949024  decreased coverage  1.79007e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0910  CDS  NC_012793  967968  968825  858  transcriptional antiterminator, BglG  YP_002949041  decreased coverage  4.76209e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0911  CDS  NC_012793  969194  970474  1281  transposase IS116/IS110/IS902 family protein  YP_002949042  decreased coverage  5.18715e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0949  CDS  NC_012793  1007572  1008348  777  Cof-like hydrolase  YP_002949078  decreased coverage  1.35628e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_0998  CDS  NC_012793  1048626  1049015  390  hypothetical protein  YP_002949124  decreased coverage  1.00442e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1106  CDS  NC_012793  1158208  1159605  1398  ATP-dependent protease ATP-binding subunit HslU  YP_002949232  decreased coverage  1.96691e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1152  CDS  NC_012793  1201809  1202957  1149  transcription elongation factor NusA  YP_002949278  decreased coverage  1.62475e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1160  CDS  NC_012793  1208539  1208808  270  30S ribosomal protein S15  YP_002949286  decreased coverage  1.29722e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1161  CDS  NC_012793  1208967  1211105  2139  polynucleotide phosphorylase/polyadenylase  YP_002949287  decreased coverage  1.84021e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1186  CDS  NC_012793  1236744  1237322  579  CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase  YP_002949312  decreased coverage  1.79236e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1193  CDS  NC_012793  1245624  1245884  261  Stage V sporulation protein S  YP_002949319  decreased coverage  1.40678e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1211  CDS  NC_012793  1263422  1264438  1017  NLP/P60 protein  YP_002949333  decreased coverage  1.71376e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1222  CDS  NC_012793  1274815  1275762  948  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_002949341  decreased coverage  6.09712e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1341  CDS  NC_012793  1408769  1409761  993  quinone oxidoreductase, YhdH/YhfP family  YP_002949451  decreased coverage  4.34756e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1363  CDS  NC_012793  1432714  1434825  2112  hypothetical protein  YP_002949467  decreased coverage  3.34966e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1467  CDS  NC_012793  1541939  1542466  528  YceI family protein  YP_002949544  decreased coverage  6.02513e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1468  CDS  NC_012793  1542754  1543614  861  transcriptional regulator, RpiR family  YP_002949545  decreased coverage  6.10661e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1499  CDS  NC_012793  1575717  1576016  300  transcriptional regulator, MerR family  YP_002949574  decreased coverage  3.39204e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1512  CDS  NC_012793  1584242  1586113  1872  PTS system, fructose subfamily, IIC subunit  YP_002949582  decreased coverage  3.50477e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1526  CDS  NC_012793  1598742  1599542  801  uroporphyrinogen-III synthase  YP_002949595  decreased coverage  6.0174e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1632  CDS  NC_012793  1707779  1708153  375  replication terminator protein  YP_002949687  decreased coverage  3.41367e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1649  CDS  NC_012793  1727770  1728096  327  transcriptional regulator, XRE family  YP_002949701  decreased coverage  4.57933e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1850    NC_012793  1915237  1916737  1501      decreased coverage  1.01854e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1851  CDS  NC_012793  1915347  1916429  1083  transposase, IS605 OrfB family  YP_002949855  decreased coverage  1.5791e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1852  CDS  NC_012793  1916778  1917986  1209  threonine dehydratase  YP_002949856  decreased coverage  4.2395e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1853  CDS  NC_012793  1918340  1919503  1164  major facilitator superfamily MFS_1  YP_002949857  decreased coverage  3.58317e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1896  CDS  NC_012793  1945661  1949347  3687  Dynamin family protein  YP_002949898  decreased coverage  0.00444431  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1906  CDS  NC_012793  1960156  1960452  297  cell division protein GpsB  YP_002949907  decreased coverage  9.67247e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1916  CDS  NC_012793  1972915  1974246  1332  FAD linked oxidase domain protein  YP_002949917  decreased coverage  2.70596e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1950  CDS  NC_012793  2009141  2009842  702  Allophanate hydrolase subunit 1  YP_002949948  decreased coverage  3.91255e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1967  CDS  NC_012793  2028496  2029491  996  transport system permease protein  YP_002949964  decreased coverage  8.63447e-06  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_1968  CDS  NC_012793  2029488  2030537  1050  transport system permease protein  YP_002949965  decreased coverage  1.15433e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2048  CDS  NC_012793  2108968  2110053  1086  Spore coat protein CotH  YP_002950036  decreased coverage  1.59417e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2049  CDS  NC_012793  2110175  2111383  1209  hypothetical protein  YP_002950037  decreased coverage  4.26052e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2050  CDS  NC_012793  2111940  2113376  1437  transposase  YP_002950038  decreased coverage  9.63714e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2062  CDS  NC_012793  2122036  2122914  879  transposase IS4 family protein  YP_002950048  decreased coverage  0.000149012  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2083  CDS  NC_012793  2154534  2155814  1281  transposase IS116/IS110/IS902 family protein  YP_002950061  decreased coverage  4.70228e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2153  CDS  NC_012793  2218104  2218670  567  GTP cyclohydrolase I  YP_002950129  decreased coverage  3.14147e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2180  CDS  NC_012793  2241885  2243072  1188  transposase IS4 family protein  YP_002950155  decreased coverage  0.000421211  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2181  CDS  NC_012793  2243171  2244154  984  Asparaginase/glutaminase  YP_002950156  decreased coverage  0.000581575  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2182  CDS  NC_012793  2244318  2245298  981  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_002950157  decreased coverage  0.000509251  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2197  CDS  NC_012793  2255812  2257389  1578  D-3-phosphoglycerate dehydrogenase  YP_002950172  decreased coverage  3.67655e-05  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2223  CDS  NC_012793  2280263  2280994  732  pseudouridine synthase  YP_002950198  decreased coverage  7.80288e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2241  CDS  NC_012793  2295376  2296266  891  protein of unknown function DUF1002  YP_002950215  decreased coverage  8.12091e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2276  CDS  NC_012793  2323286  2324212  927  ribonuclease Z  YP_002950250  decreased coverage  1.39422e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2277  CDS  NC_012793  2324422  2325912  1491  glucose-6-phosphate 1-dehydrogenase  YP_002950251  decreased coverage  1.72481e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2288  CDS  NC_012793  2333805  2334782  978  protein of unknown function DUF939  YP_002950262  decreased coverage  8.89666e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2289  CDS  NC_012793  2334846  2335568  723  ABC transporter related  YP_002950263  decreased coverage  2.5555e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2291  CDS  NC_012793  2336293  2337075  783  extracellular solute-binding protein family 3  YP_002950265  decreased coverage  2.99609e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2292  CDS  NC_012793  2337304  2337735  432  protein of unknown function DUF1094  YP_002950266  decreased coverage  8.72065e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2325  CDS  NC_012793  2374333  2374734  402  transcription antitermination protein NusB  YP_002950295  decreased coverage  7.36737e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2326  CDS  NC_012793  2375005  2375400  396  protein of unknown function DUF322  YP_002950296  decreased coverage  5.99295e-10  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2359  CDS  NC_012793  2402320  2403777  1458  glycine dehydrogenase subunit 2  YP_002950322  decreased coverage  6.90583e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2429  CDS  NC_012793  2462308  2462757  450  hypothetical protein  YP_002950391  decreased coverage  7.04345e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2430  CDS  NC_012793  2462772  2462945  174  30S ribosomal protein S21  YP_002950392  decreased coverage  2.48276e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2488  CDS  NC_012793  2513663  2514079  417  Holliday junction resolvase YqgF  YP_002950449  decreased coverage  6.80199e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2489  CDS  NC_012793  2514083  2514349  267  hypothetical protein  YP_002950450  decreased coverage  3.23886e-08  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2490  CDS  NC_012793  2514417  2517050  2634  alanyl-tRNA synthetase  YP_002950451  decreased coverage  0.000298908  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2504  CDS  NC_012793  2531735  2532385  651  transcription factor, RsfA family  YP_002950465  decreased coverage  4.39495e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2505  CDS  NC_012793  2532419  2533183  765  UBA/THIF-type NAD/FAD binding protein  YP_002950466  decreased coverage  8.13417e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2506  CDS  NC_012793  2533587  2535371  1785  aspartyl-tRNA synthetase  YP_002950467  decreased coverage  2.73748e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2512  CDS  NC_012793  2540678  2543035  2358  single-stranded-DNA-specific exonuclease RecJ  YP_002950473  decreased coverage  5.79618e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2521  CDS  NC_012793  2550817  2551818  1002  Holliday junction DNA helicase RuvB  YP_002950482  decreased coverage  1.39422e-07  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2540  CDS  NC_012793  2569135  2569425  291  50S ribosomal protein L27  YP_002950501  decreased coverage  1.33026e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2541  CDS  NC_012793  2569441  2569773  333  hypothetical protein  YP_002950502  decreased coverage  1.52963e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2617  CDS  NC_012793  2652285  2653226  942  NAD-dependent epimerase/dehydratase  YP_002950577  decreased coverage  1.01003e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2618  CDS  NC_012793  2653334  2654524  1191  hypothetical protein  YP_002950578  decreased coverage  2.18897e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
GWCH70_2619  CDS  NC_012793  2654664  2655791  1128  alkanesulfonate monooxygenase  YP_002950579  decreased coverage  1.06001e-09  n/a    Geobacillus sp. WCH70  Bacteria 
 
 
-
 
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