49 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ccur_00090  CDS  NC_013170  9818  10384  567  DnaJ-class molecular chaperone with C-terminal Zn finger domain protein  YP_003150426  decreased coverage  5.77913e-07  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00100  CDS  NC_013170  10384  12198  1815  GTP-binding protein TypA/BipA  YP_003150427  decreased coverage  1.72571e-05  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00300  CDS  NC_013170  38690  44140  5451  conserved repeat protein (List_Bact_rpt)  YP_003150445  normal  0.0283714  decreased coverage  3.90455e-10  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00310  CDS  NC_013170  44311  44553  243  SSU ribosomal protein S16P  YP_003150446  unclonable  4.91979e-09  decreased coverage  3.78635e-12  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00480  CDS  NC_013170  63325  65145  1821  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  YP_003150463  decreased coverage  0.00118843  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00630  CDS  NC_013170  79236  79358  123  hypothetical protein  YP_003150478  decreased coverage  3.64486e-05  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00640  CDS  NC_013170  79357  79545  189  dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit  YP_003150479  decreased coverage  3.82755e-05  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_00810  CDS  NC_013170  101455  102897  1443  Cna protein B-type domain-containing protein  YP_003150496  decreased coverage  0.00133256  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_01690  CDS  NC_013170  204214  205185  972  hypothetical protein  YP_003150582  unclonable  2.77676e-08  decreased coverage  1.77257e-14  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_03650  CDS  NC_013170  423929  425719  1791  ABC-type multidrug transport system, ATPase and permease component  YP_003150772  unclonable  6.96051e-07  decreased coverage  0.00250447  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_03800  CDS  NC_013170  438977  439516  540  predicted RNA-binding protein containing a PIN domain protein  YP_003150786  decreased coverage  6.18341e-07  normal  0.163612  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_04750  CDS  NC_013170  563586  564317  732  hemolysin A  YP_003150879  decreased coverage  0.000612241  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_04760  CDS  NC_013170  564534  566255  1722  predicted xylanase/chitin deacetylase  YP_003150880  decreased coverage  0.000622168  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_05280  CDS  NC_013170  623935  625218  1284  Na+/H+ antiporter NhaD-like permease  YP_003150931  decreased coverage  0.00452753  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_05410  CDS  NC_013170  640399  641337  939  Protein of unknown function DUF88  YP_003150944  decreased coverage  2.45308e-06  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_05740  CDS  NC_013170  675998  676351  354  LSU ribosomal protein L20P  YP_003150974  decreased coverage  1.2199e-07  normal  0.0122872  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_05980  CDS  NC_013170  702368  703762  1395  GTP-binding protein Obg/CgtA  YP_003150997  hitchhiker  0.00718326  decreased coverage  1.09453e-12  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_06240  CDS  NC_013170  730817  731482  666  predicted Zn-dependent protease  YP_003151022  decreased coverage  7.28201e-07  hitchhiker  0.0055368  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_06500  CDS  NC_013170  761312  762037  726  hypothetical protein  YP_003151047  decreased coverage  2.80748e-05  normal  0.453475  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_06510  tRNA  NC_013170  762100  762175  76  tRNA-Arg    decreased coverage  3.38303e-05  normal  0.349036  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_06760  CDS  NC_013170  788248  788997  750  glucosamine-6-phosphate isomerase  YP_003151068  decreased coverage  5.83825e-07  normal  0.599232  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07000  CDS  NC_013170  811813  812157  345  LSU ribosomal protein L19P  YP_003151092  decreased coverage  2.23468e-06  normal  0.416824  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07010  CDS  NC_013170  812323  813111  789  ribonuclease HII  YP_003151093  decreased coverage  7.06526e-06  normal  0.43338  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07160  CDS  NC_013170  832131  833687  1557  phosphoglyceromutase  YP_003151108  decreased coverage  6.81979e-05  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07190  tRNA  NC_013170  834606  834681  76  tRNA-Gly    decreased coverage  1.70104e-06  normal  0.886703  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07200  tRNA  NC_013170  834746  834819  74  tRNA-Cys    decreased coverage  1.70104e-06  normal  0.867766  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07210  tRNA  NC_013170  834912  834986  75  tRNA-Val    decreased coverage  1.70104e-06  normal  0.87743  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07220  CDS  NC_013170  835228  837159  1932  NADH:ubiquinone oxidoreductase subunit 5 (chain L)/multisubunit Na+/H+ antiporter, MnhA subunit  YP_003151110  decreased coverage  0.000172038  normal  0.975039  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07530  CDS  NC_013170  866806  869253  2448  DNA segregation ATPase, FtsK/SpoIIIE family  YP_003151141  decreased coverage  0.00736792  normal  0.793851  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07540  CDS  NC_013170  869327  871222  1896  predicted hydrolase of the metallo-beta-lactamase superfamily  YP_003151142  decreased coverage  0.000160452  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_07870  CDS  NC_013170  901504  902094  591  pyrimidine operon attenuation protein/uracil phosphoribosyltransferase  YP_003151173  decreased coverage  0.00012346  normal  0.500468  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_08410  CDS  NC_013170  961400  962326  927  transcriptional regulator  YP_003151225  decreased coverage  0.00913981  normal  0.237754  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_08670  CDS  NC_013170  993802  994839  1038  branched-chain amino acid aminotransferase  YP_003151251  decreased coverage  0.00341409  normal  0.322346  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_08900  CDS  NC_013170  1021508  1022581  1074  peptide chain release factor 1  YP_003151273  decreased coverage  8.7001e-05  normal  0.899711  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
-
 
Ccur_09030  CDS  NC_013170  1038234  1039877  1644  trigger factor  YP_003151284  decreased coverage  0.001374  normal  0.491462  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09150  CDS  NC_013170  1051204  1052133  930  hypothetical protein  YP_003151295  decreased coverage  0.000277277  normal  0.476622  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09710  CDS  NC_013170  1112365  1113567  1203  translation elongation factor 1A (EF-1A/EF-Tu)  YP_003151347  decreased coverage  2.20871e-06  hitchhiker  1.38274e-06  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09730  tRNA  NC_013170  1113835  1113910  76  tRNA-Thr    decreased coverage  9.07355e-08  hitchhiker  1.19481e-05  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09740  tRNA  NC_013170  1113916  1114000  85  tRNA-Tyr    decreased coverage  9.43193e-08  hitchhiker  1.23318e-05  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09750  CDS  NC_013170  1114187  1115749  1563  sodium/proline symporter  YP_003151348  decreased coverage  3.829e-06  hitchhiker  4.5945e-05  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_09870  CDS  NC_013170  1127296  1127481  186  SSU ribosomal protein S14P  YP_003151360  decreased coverage  0.000893021  hitchhiker  1.77439e-05  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_10020  CDS  NC_013170  1137640  1138260  621  LSU ribosomal protein L3P  YP_003151375  decreased coverage  4.02835e-07  hitchhiker  3.18342e-09  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_10030  CDS  NC_013170  1138275  1138583  309  SSU ribosomal protein S10P  YP_003151376  decreased coverage  1.7716e-07  hitchhiker  1.88362e-09  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_10040  CDS  NC_013170  1138627  1140729  2103  translation elongation factor 2 (EF-2/EF-G)  YP_003151377  decreased coverage  1.70843e-05  decreased coverage  8.39395e-11  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_10050  CDS  NC_013170  1140744  1141214  471  SSU ribosomal protein S7P  YP_003151378  decreased coverage  2.94086e-07  hitchhiker  1.01858e-09  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_10940  CDS  NC_013170  1242492  1244111  1620  trypsin-like serine protease with C-terminal PDZ domain protein  YP_003151467  decreased coverage  3.45024e-05  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_11090  CDS  NC_013170  1263167  1265089  1923  drug resistance transporter, EmrB/QacA subfamily  YP_003151481  decreased coverage  0.000431734  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_12790  CDS  NC_013170  1446576  1447931  1356  citrate synthase  YP_003151640  decreased coverage  0.0027871  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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Ccur_13240  CDS  NC_013170  1491590  1492060  471  transcription elongation factor GreA  YP_003151684  decreased coverage  0.00714364  normal  Cryptobacterium curtum DSM 15641  Bacteria 
 
 
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