73 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mnod_0081  CDS  NC_011894  87265  87861  597  hypothetical protein  YP_002495434  decreased coverage  0.00750579  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0138  CDS  NC_011894  149158  149574  417  protein of unknown function UPF0150  YP_002495487  decreased coverage  0.00419198  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0164  CDS  NC_011894  177163  177399  237  hypothetical protein  YP_002495513  decreased coverage  0.000551719  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0165  CDS  NC_011894  177547  177852  306  hypothetical protein  YP_002495514  decreased coverage  0.00168593  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0314  CDS  NC_011894  356747  357694  948  cation diffusion facilitator family transporter  YP_002495661  decreased coverage  0.00366516  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0341  CDS  NC_011894  383831  384028  198  hypothetical protein  YP_002495687  decreased coverage  0.00319546  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0467  CDS  NC_011894  521693  522949  1257  hypothetical protein  YP_002495812  decreased coverage  0.0053089  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0635  CDS  NC_011894  692124  693740  1617  hypothetical protein  YP_002495972  decreased coverage  0.00824638  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_0717  CDS  NC_011894  788303  789088  786  hypothetical protein  YP_002496052  decreased coverage  0.00932246  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_0718  CDS  NC_011894  789217  789798  582  hypothetical protein  YP_002496053  decreased coverage  0.00551171  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1096  CDS  NC_011894  1163807  1164700  894  transcriptional regulator, LysR family  YP_002496406  decreased coverage  0.000448558  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1138  CDS  NC_011894  1203175  1203588  414  PRC-barrel domain protein  YP_002496447  decreased coverage  0.000314637  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1181  CDS  NC_011894  1251700  1252314  615  transcriptional regulator, TetR family  YP_002496490  decreased coverage  0.000866899  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_1287  CDS  NC_011894  1361733  1362968  1236  chromate transporter, chromate ion transporter (CHR) family  YP_002496591  decreased coverage  0.00265725  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1689  CDS  NC_011894  1780203  1781039  837  inositol monophosphatase  YP_002496982  decreased coverage  0.005759  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_1895  CDS  NC_011894  1995908  1996357  450  50S ribosomal protein L11  YP_002497187  decreased coverage  0.00848778  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1906  CDS  NC_011894  2012769  2013959  1191  elongation factor Tu  YP_002497198  decreased coverage  0.00245882  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1907  CDS  NC_011894  2014046  2014354  309  30S ribosomal protein S10  YP_002497199  decreased coverage  0.000187857  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_1908  CDS  NC_011894  2014408  2015163  756  50S ribosomal protein L3  YP_002497200  decreased coverage  6.66211e-05  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_1909  CDS  NC_011894  2015163  2015783  621  50S ribosomal protein L4  YP_002497201  decreased coverage  0.00049189  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_1910  CDS  NC_011894  2015780  2016076  297  50S ribosomal protein L23  YP_002497202  decreased coverage  0.000483337  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_1935  CDS  NC_011894  2031094  2032221  1128  Extracellular ligand-binding receptor  YP_002497227  decreased coverage  0.00837309  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_2938  CDS  NC_011894  3032039  3032674  636  hypothetical protein  YP_002498192  decreased coverage  0.00388332  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_3070  CDS  NC_011894  3168778  3169533  756  short-chain dehydrogenase/reductase SDR  YP_002498314  decreased coverage  0.000195486  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_3621  CDS  NC_011894  3713648  3715009  1362  flagellum-specific ATP synthase  YP_002498833  decreased coverage  0.000764304  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_4545  CDS  NC_011894  4601347  4601997  651  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase  YP_002499715  decreased coverage  0.00784666  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_4546  CDS  NC_011894  4601994  4602929  936  PfkB domain protein  YP_002499716  decreased coverage  0.00872695  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4566  CDS  NC_011894  4621244  4622524  1281  Flavocytochrome c sulphide dehydrogenase flavin-binding  YP_002499736  decreased coverage  0.00485365  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4567  CDS  NC_011894  4622521  4622817  297  cytochrome c class I  YP_002499737  decreased coverage  0.00798656  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4582  CDS  NC_011894  4638984  4640417  1434  FAD linked oxidase domain protein  YP_002499752  decreased coverage  0.000242662  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4704  CDS  NC_011894  4784982  4785455  474  hypothetical protein  YP_002499872  decreased coverage  0.00344811  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4705  CDS  NC_011894  4785439  4785789  351  hypothetical protein  YP_002499873  decreased coverage  0.00630861  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4735  CDS  NC_011894  4813511  4814059  549  NUDIX hydrolase  YP_002499903  decreased coverage  3.7989e-05  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4756  CDS  NC_011894  4835547  4837754  2208  helicase, RecD/TraA family  YP_002499923  decreased coverage  0.00416284  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4823  CDS  NC_011894  4907124  4908401  1278  formyl-coenzyme A transferase  YP_002499988  decreased coverage  0.00285231  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_4845  CDS  NC_011894  4937300  4937803  504  protein of unknown function DUF892  YP_002500010  decreased coverage  0.00641789  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5274  CDS  NC_011894  5351695  5352231  537  molybdopterin-guanine dinucleotide biosynthesis protein A  YP_002500423  decreased coverage  0.00877688  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5288  CDS  NC_011894  5363669  5364592  924  protein of unknown function DUF81  YP_002500436  decreased coverage  0.000586578  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5333  CDS  NC_011894  5409597  5411309  1713  protein of unknown function DUF323  YP_002500481  decreased coverage  0.00984541  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5356  CDS  NC_011894  5433218  5434504  1287  4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase  YP_002500504  decreased coverage  0.00302187  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5357  CDS  NC_011894  5434712  5436682  1971  K potassium transporter  YP_002500505  decreased coverage  0.00124872  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_5469  CDS  NC_011894  5568750  5570537  1788  penicillin-binding protein transpeptidase  YP_002500616  decreased coverage  0.00596521  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5477  CDS  NC_011894  5581508  5584438  2931  glutamate-ammonia ligase adenylyltransferase  YP_002500624  decreased coverage  0.00635659  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5846  CDS  NC_011894  5946552  5947871  1320  FeS assembly protein SufD  YP_002500977  decreased coverage  0.00798373  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5870  CDS  NC_011894  5976635  5977003  369  hypothetical protein  YP_002501001  decreased coverage  0.00998737  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_5875  CDS  NC_011894  5983474  5984076  603  chloramphenicol acetyltransferase  YP_002501006  decreased coverage  0.0086312  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_5911  CDS  NC_011894  6029136  6030050  915  hypothetical protein  YP_002501042  decreased coverage  0.00689412  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_6056  CDS  NC_011894  6169516  6170310  795  transcriptional regulator, GntR family  YP_002501184  decreased coverage  0.00777479  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_6534  CDS  NC_011894  6620844  6621299  456  cyclase/dehydrase  YP_002501606  decreased coverage  0.00656463  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_6605  CDS  NC_011894  6698667  6700262  1596  exodeoxyribonuclease VII, large subunit  YP_002501676  decreased coverage  0.0079449  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_6709  CDS  NC_011894  6792600  6793466  867  6-phosphogluconate dehydrogenase NAD-binding  YP_002501773  decreased coverage  0.00300893  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_6710  CDS  NC_011894  6793497  6794267  771  extracellular solute-binding protein family 3  YP_002501774  decreased coverage  0.000229164  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7062  CDS  NC_011894  7136152  7136841  690  Glutathione S-transferase domain protein  YP_002502105  decreased coverage  0.00932246  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7116  CDS  NC_011894  7196756  7197934  1179  malate--CoA ligase subunit beta  YP_002502159  decreased coverage  0.00456682  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7278  CDS  NC_011894  7372445  7373287  843  hypothetical protein  YP_002502320  decreased coverage  0.00843163  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7281  CDS  NC_011894  7374917  7375876  960  Sel1 domain protein repeat-containing protein  YP_002502323  decreased coverage  0.00795685  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7282  CDS  NC_011894  7375873  7376577  705  thiamine monophosphate synthase  YP_002502324  decreased coverage  0.00853533  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7368  CDS  NC_011894  7451430  7452791  1362  major facilitator superfamily MFS_1  YP_002502408  decreased coverage  0.00609058  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7411  CDS  NC_011894  7499391  7501679  2289  ribonuclease R  YP_002502451  decreased coverage  0.00900108  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7412  CDS  NC_011894  7501676  7502191  516  protein of unknown function DUF983  YP_002502452  decreased coverage  0.00641789  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7431  CDS  NC_011894  7517480  7518202  723  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002502471  decreased coverage  0.00872807  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7432  CDS  NC_011894  7518276  7518476  201  hypothetical protein  YP_002502472  decreased coverage  0.00266618  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7539  CDS  NC_011894  7635046  7635591  546  6,7-dimethyl-8-ribityllumazine synthase  YP_002502578  decreased coverage  0.00249659  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7583  CDS  NC_011894  7693326  7694216  891  RNA polymerase factor sigma-32  YP_002502622  decreased coverage  0.00673582  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_7655  CDS  NC_011894  7751904  7755350  3447  chromosome segregation protein SMC  YP_002502688  decreased coverage  0.00190533  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7786  CDS  NC_011887  14674  14997  324  hypothetical protein  YP_002489990  decreased coverage  0.0016591  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7787  CDS  NC_011887  15055  15381  327  transposase IS3/IS911 family protein  YP_002489991  decreased coverage  0.00188003  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7963    NC_011887  185405  185943  539      decreased coverage  0.00570677  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_7964  CDS  NC_011887  186105  187151  1047  transposase IS116/IS110/IS902 family protein  YP_002490133  decreased coverage  0.00546664  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_8275    NC_011892  17715  17834  120      decreased coverage  0.000772942  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_8276    NC_011892  17851  18309  459      decreased coverage  0.00151051  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
-
 
Mnod_8678  CDS  NC_011892  412704  413261  558  cytochrome c class I  YP_002495235  decreased coverage  0.00176651  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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Mnod_R0001  tRNA  NC_011894  88195  88269  75  tRNA-Thr    decreased coverage  0.00463461  n/a    Methylobacterium nodulans ORS 2060  Bacteria 
 
 
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