38 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mboo_0287  CDS  NC_009712  272885  274783  1899  putative transcriptional regulator  YP_001403452  decreased coverage  0.00361715  normal  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0351  CDS  NC_009712  341664  343568  1905  hypothetical protein  YP_001403514  decreased coverage  2.01568e-06  normal  0.805939  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0360  CDS  NC_009712  354537  355679  1143  hypothetical protein  YP_001403523  normal  0.102743  decreased coverage  0.00986478  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0377  CDS  NC_009712  367523  368722  1200  hypothetical protein  YP_001403540  decreased coverage  0.00965227  normal  0.177253  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0388  CDS  NC_009712  376396  377796  1401  major facilitator transporter  YP_001403551  decreased coverage  0.00816882  normal  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0464  CDS  NC_009712  447592  448767  1176  GntR family transcriptional regulator  YP_001403625  normal  decreased coverage  0.000813443  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0586  CDS  NC_009712  554836  556149  1314  methyl-coenzyme M reductase, beta subunit  YP_001403747  decreased coverage  1.10254e-07  normal  0.0430259  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0824  CDS  NC_009712  801064  801699  636  hypothetical protein  YP_001403985  decreased coverage  0.00713824  normal  0.34872  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_0923  CDS  NC_009712  904600  906465  1866  molybdopterin oxidoreductase  YP_001404084  normal  decreased coverage  2.28459e-10  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1080  CDS  NC_009712  1070437  1071321  885  beta-lactamase domain-containing protein  YP_001404241  decreased coverage  0.0034606  normal  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1187  CDS  NC_009712  1198397  1199731  1335  hypothetical protein  YP_001404348  normal  0.449645  decreased coverage  0.00587961  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1188  CDS  NC_009712  1199969  1200385  417  hypothetical protein  YP_001404349  normal  0.982767  decreased coverage  0.0042804  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1189  CDS  NC_009712  1200405  1201118  714  regulatory protein, ArsR  YP_001404350  normal  0.581479  decreased coverage  0.00502087  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1285  CDS  NC_009712  1306218  1308812  2595  magnesium-translocating P-type ATPase  YP_001404446  decreased coverage  0.000219162  decreased coverage  0.00727279  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1286  CDS  NC_009712  1308959  1310191  1233  aldo/keto reductase  YP_001404447  normal  0.0119891  decreased coverage  0.00591823  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1293  CDS  NC_009712  1315746  1316444  699  cobalamin biosynthesis protein CbiM  YP_001404454  decreased coverage  0.0034572  normal  0.0275766  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1294  CDS  NC_009712  1316441  1316749  309  cobalt transport protein CbiN  YP_001404455  decreased coverage  0.00272404  normal  0.0249047  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1304  CDS  NC_009712  1327826  1328353  528  hypothetical protein  YP_001404465  decreased coverage  0.0039184  normal  0.0653972  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1305  CDS  NC_009712  1328372  1328803  432  hypothetical protein  YP_001404466  decreased coverage  0.00231898  normal  0.0638651  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1404  CDS  NC_009712  1434649  1435815  1167  cell division protein FtsZ  YP_001404565  decreased coverage  6.84878e-08  normal  0.237332  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1431  CDS  NC_009712  1465409  1466389  981  PEGA domain-containing protein  YP_001404592  normal  0.075762  decreased coverage  7.10587e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1432  CDS  NC_009712  1466481  1468070  1590  hypothetical protein  YP_001404593  normal  0.177306  decreased coverage  0.000115076  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1433  CDS  NC_009712  1468175  1469452  1278  seryl-tRNA synthetase  YP_001404594  hitchhiker  0.00416248  decreased coverage  7.98458e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1434  CDS  NC_009712  1469874  1471142  1269  natural resistance-associated macrophage protein  YP_001404595  decreased coverage  1.45386e-07  hitchhiker  0.000182924  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1436  CDS  NC_009712  1471376  1472653  1278  MgtE intracellular region  YP_001404597  hitchhiker  6.84076e-06  decreased coverage  7.60195e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1437  CDS  NC_009712  1472686  1473318  633  methyltransferase type 11  YP_001404598  hitchhiker  0.00131296  decreased coverage  5.00722e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1452  CDS  NC_009712  1488286  1488999  714  hypothetical protein  YP_001404613  decreased coverage  0.00552947  normal  0.0731246  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1476  CDS  NC_009712  1516437  1516778  342  hypothetical protein  YP_001404637  decreased coverage  0.00541567  normal  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1506  CDS  NC_009712  1569764  1570039  276  hypothetical protein  YP_001404667  normal  decreased coverage  0.00803189  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1508  CDS  NC_009712  1570315  1570857  543  hypothetical protein  YP_001404669  normal  0.900377  decreased coverage  0.00853597  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1634  CDS  NC_009712  1710082  1712208  2127  DNA gyrase, B subunit  YP_001404794  decreased coverage  5.82851e-06  hitchhiker  0.000898108  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1640  CDS  NC_009712  1718060  1719001  942  cobalt ABC transporter, inner membrane subunit CbiQ  YP_001404800  normal  decreased coverage  3.68028e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1641  CDS  NC_009712  1719389  1719598  210  TOBE domain-containing protein  YP_001404801  normal  decreased coverage  2.1781e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1642  CDS  NC_009712  1720213  1720662  450  hypothetical protein  YP_001404802  normal  decreased coverage  2.58996e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1643  CDS  NC_009712  1720916  1721338  423  CopG family transcriptional regulator  YP_001404803  normal  decreased coverage  2.69216e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1646  CDS  NC_009712  1723097  1724287  1191  hypothetical protein  YP_001404806  normal  decreased coverage  3.28071e-05  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_1768  CDS  NC_009712  1850721  1851779  1059  NAD-dependent epimerase/dehydratase  YP_001404927  decreased coverage  0.000159776  normal  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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Mboo_2266  CDS  NC_009712  2332911  2334287  1377  hypothetical protein  YP_001405423  decreased coverage  1.13487e-07  normal  0.0819386  Candidatus Methanoregula boonei 6A8  Archaea 
 
 
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