110 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Achl_0001  CDS  NC_011886  177  1598  1422  chromosomal replication initiator protein DnaA  YP_002486093  n/a    decreased coverage  2.84064e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0002  CDS  NC_011886  2127  3251  1125  DNA polymerase III, beta subunit  YP_002486094  n/a    decreased coverage  2.5514e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0006  CDS  NC_011886  6422  8509  2088  DNA gyrase subunit B  YP_002486098  n/a    decreased coverage  6.1906e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0007  CDS  NC_011886  8562  11192  2631  DNA gyrase subunit A  YP_002486099  n/a    decreased coverage  1.1369e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0008  CDS  NC_011886  11462  11848  387  putative integral membrane protein  YP_002486100  n/a    decreased coverage  8.31576e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0009  CDS  NC_011886  12053  12205  153  hypothetical protein  YP_002486101  n/a    decreased coverage  5.96458e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0010  CDS  NC_011886  12446  13384  939  protein of unknown function DUF6 transmembrane  YP_002486102  n/a    decreased coverage  1.32585e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0499  CDS  NC_011886  534523  535827  1305  extracellular solute-binding protein family 1  YP_002486587  n/a    decreased coverage  5.7577e-05  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0609  CDS  NC_011886  653791  655278  1488  NLP/P60 protein  YP_002486696  n/a    decreased coverage  0.00032953  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0768  CDS  NC_011886  819906  821630  1725  major facilitator superfamily MFS_1  YP_002486852  n/a    decreased coverage  1.06012e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0987  CDS  NC_011886  1083095  1084006  912  hypothetical protein  YP_002487071  n/a    decreased coverage  0.000176553  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_0988  CDS  NC_011886  1084149  1085228  1080  NADH:flavin oxidoreductase/NADH oxidase  YP_002487072  n/a    decreased coverage  0.000470926  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1164  CDS  NC_011886  1279142  1279708  567  phosphoribosylglycinamide formyltransferase  YP_002487244  n/a    decreased coverage  4.85336e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1165  CDS  NC_011886  1279938  1280846  909  hypothetical protein  YP_002487245  n/a    decreased coverage  6.6316e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1278  CDS  NC_011886  1406387  1408927  2541  transglutaminase domain protein  YP_002487358  n/a    decreased coverage  2.35429e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1279  CDS  NC_011886  1408924  1410399  1476  protein of unknown function DUF58  YP_002487359  n/a    decreased coverage  7.79401e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1280  CDS  NC_011886  1410410  1411561  1152  ATPase associated with various cellular activities AAA_3  YP_002487360  n/a    decreased coverage  5.92788e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1281  CDS  NC_011886  1411724  1412629  906  hydrolase, TatD family  YP_002487361  n/a    decreased coverage  5.34361e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1282  CDS  NC_011886  1412886  1414079  1194  Transglycosylase domain protein  YP_002487362  n/a    decreased coverage  6.73899e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1283  CDS  NC_011886  1414213  1415085  873  dimethyladenosine transferase  YP_002487363  n/a    decreased coverage  5.58155e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1354  CDS  NC_011886  1518734  1519930  1197  2-amino-3-ketobutyrate coenzyme A ligase  YP_002487433  n/a    decreased coverage  1.20772e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1355  CDS  NC_011886  1519985  1521094  1110  FAD dependent oxidoreductase  YP_002487434  n/a    decreased coverage  1.18707e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1356  CDS  NC_011886  1521106  1522317  1212  imidazolonepropionase  YP_002487435  n/a    decreased coverage  1.32796e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1365  CDS  NC_011886  1530376  1530609  234  RNA-binding S4 domain protein  YP_002487444  n/a    decreased coverage  5.48467e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1366  CDS  NC_011886  1530642  1531643  1002  protein of unknown function DUF606  YP_002487445  n/a    decreased coverage  1.30527e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1367  CDS  NC_011886  1531774  1533159  1386  glycyl-tRNA synthetase  YP_002487446  n/a    decreased coverage  2.3951e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1368  CDS  NC_011886  1533162  1534214  1053  hypothetical protein  YP_002487447  n/a    decreased coverage  1.83641e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1369  CDS  NC_011886  1534334  1535158  825  phospholipid/glycerol acyltransferase  YP_002487448  n/a    decreased coverage  1.64398e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1370  CDS  NC_011886  1535234  1535992  759  hypothetical protein  YP_002487449  n/a    decreased coverage  1.45886e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1371  CDS  NC_011886  1536076  1537530  1455  YibE/F family protein  YP_002487450  n/a    decreased coverage  2.98866e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1372  CDS  NC_011886  1537674  1538852  1179  TIM-barrel protein, nifR3 family  YP_002487451  n/a    decreased coverage  1.90113e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1412  CDS  NC_011886  1579492  1580823  1332  peptidase M50  YP_002487491  n/a    decreased coverage  1.53747e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1452  CDS  NC_011886  1621203  1622438  1236  protein of unknown function DUF1624  YP_002487530  n/a    decreased coverage  7.79401e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1453  CDS  NC_011886  1622552  1622938  387  hypothetical protein  YP_002487531  n/a    decreased coverage  3.08089e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1454  CDS  NC_011886  1623018  1623926  909  dihydrodipicolinate synthase  YP_002487532  n/a    decreased coverage  5.82626e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1455  CDS  NC_011886  1623968  1625659  1692  beta-lactamase domain protein  YP_002487533  n/a    decreased coverage  1.3396e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1598  CDS  NC_011886  1788847  1789866  1020  lipoyl synthase  YP_002487675  n/a    decreased coverage  2.95116e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1624  CDS  NC_011886  1827093  1828343  1251  type I phosphodiesterase/nucleotide pyrophosphatase  YP_002487701  n/a    decreased coverage  1.05277e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1674  CDS  NC_011886  1881883  1882146  264  phosphoribosyl-ATP pyrophosphatase  YP_002487750  n/a    decreased coverage  2.6206e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1675  CDS  NC_011886  1882235  1883089  855  ATP phosphoribosyltransferase  YP_002487751  n/a    decreased coverage  5.40351e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1676  CDS  NC_011886  1883135  1883911  777  imidazole glycerol phosphate synthase subunit HisF  YP_002487752  n/a    decreased coverage  4.19355e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1677  CDS  NC_011886  1883984  1884646  663  hypothetical protein  YP_002487753  n/a    decreased coverage  3.47521e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1678  CDS  NC_011886  1884740  1885270  531  Phosphoribosyl-AMP cyclohydrolase  YP_002487754  n/a    decreased coverage  3.34646e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1784  CDS  NC_011886  2016888  2019503  2616  ATP-dependent helicase HrpB  YP_002487852  n/a    decreased coverage  6.13438e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1785    NC_011886  2019677  2019778  102      n/a    decreased coverage  3.57019e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1786  CDS  NC_011886  2019822  2020508  687  dienelactone hydrolase  YP_002487853  n/a    decreased coverage  5.70181e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1802  CDS  NC_011886  2035095  2037779  2685  DNA polymerase I  YP_002487867  n/a    decreased coverage  8.38871e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1803  CDS  NC_011886  2037840  2039156  1317  hypothetical protein  YP_002487868  n/a    decreased coverage  1.41215e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1804  CDS  NC_011886  2039444  2040919  1476  30S ribosomal protein S1  YP_002487869  n/a    decreased coverage  1.61597e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1805  CDS  NC_011886  2041110  2041640  531  GCN5-related N-acetyltransferase  YP_002487870  n/a    decreased coverage  5.02354e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1806  CDS  NC_011886  2041624  2042325  702  protein of unknown function UPF0029  YP_002487871  n/a    decreased coverage  6.29698e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1807  CDS  NC_011886  2042369  2043667  1299  ATP-dependent Na+ efflux pump  YP_002487872  n/a    decreased coverage  1.0693e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1808  CDS  NC_011886  2043664  2044548  885  ABC transporter related  YP_002487873  n/a    decreased coverage  5.39962e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1809  CDS  NC_011886  2044697  2045911  1215  dephospho-CoA kinase/protein folding accessory domain-containing protein  YP_002487874  n/a    decreased coverage  8.46791e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1810  CDS  NC_011886  2045992  2048106  2115  excinuclease ABC subunit B  YP_002487875  n/a    decreased coverage  2.39572e-14  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1811  CDS  NC_011886  2048312  2049340  1029  Integral membrane protein TerC  YP_002487876  n/a    decreased coverage  4.88909e-15  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1904  CDS  NC_011886  2152237  2154768  2532  excinuclease ABC, A subunit  YP_002487968  n/a    decreased coverage  1.10525e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1977  CDS  NC_011886  2227721  2229577  1857  GTP-binding protein LepA  YP_002488040  n/a    decreased coverage  9.36428e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_1978  CDS  NC_011886  2229748  2230311  564  hypothetical protein  YP_002488041  n/a    decreased coverage  3.03901e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2038  CDS  NC_011886  2298162  2299424  1263  hypothetical protein  YP_002488101  n/a    decreased coverage  7.00253e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2039  CDS  NC_011886  2299572  2301584  2013  Peptidyl-dipeptidase Dcp  YP_002488102  n/a    decreased coverage  1.53602e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2041  CDS  NC_011886  2302998  2303627  630  CDP-alcohol phosphatidyltransferase  YP_002488104  n/a    decreased coverage  2.24281e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2042  CDS  NC_011886  2303617  2304204  588  histidine triad (HIT) protein  YP_002488105  n/a    decreased coverage  1.92809e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2043  CDS  NC_011886  2304221  2306230  2010  threonyl-tRNA synthetase  YP_002488106  n/a    decreased coverage  8.6336e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2143  CDS  NC_011886  2406846  2408435  1590  GTPase ObgE  YP_002488200  n/a    decreased coverage  1.37985e-16  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2144  CDS  NC_011886  2408549  2408812  264  50S ribosomal protein L27  YP_002488201  n/a    decreased coverage  2.67084e-17  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2145  CDS  NC_011886  2408873  2409181  309  50S ribosomal protein L21  YP_002488202  n/a    decreased coverage  1.69528e-18  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2235  CDS  NC_011886  2506789  2510376  3588  chromosome segregation protein SMC  YP_002488289  n/a    decreased coverage  9.34649e-12  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2236  CDS  NC_011886  2510519  2511634  1116  hypothetical protein  YP_002488290  n/a    decreased coverage  4.12542e-13  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2310  CDS  NC_011886  2598952  2599962  1011  Exonuclease RNase T and DNA polymerase III  YP_002488364  n/a    decreased coverage  1.67854e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2311  CDS  NC_011886  2600071  2600850  780  SNARE associated Golgi protein  YP_002488365  n/a    decreased coverage  1.16146e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2313  CDS  NC_011886  2601602  2602360  759  ribonuclease PH  YP_002488367  n/a    decreased coverage  9.80644e-10  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2314  CDS  NC_011886  2602427  2603224  798  hypothetical protein  YP_002488368  n/a    decreased coverage  9.80644e-10  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2315  CDS  NC_011886  2603221  2604303  1083  glutamate racemase  YP_002488369  n/a    decreased coverage  1.33426e-09  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2316  CDS  NC_011886  2604370  2604936  567  hypothetical protein  YP_002488370  n/a    decreased coverage  7.5431e-10  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2360  CDS  NC_011886  2649374  2650246  873  ApbE family lipoprotein  YP_002488414  n/a    decreased coverage  7.06086e-08  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2361  CDS  NC_011886  2650243  2651787  1545  oxidoreductase FAD/NAD(P)-binding domain protein  YP_002488415  n/a    decreased coverage  1.08659e-07  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2362  CDS  NC_011886  2652195  2653247  1053  peptidase M4 thermolysin  YP_002488416  n/a    decreased coverage  7.36237e-08  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2366  CDS  NC_011886  2654929  2658939  4011  ATP-dependent helicase HrpA  YP_002488420  n/a    decreased coverage  1.12008e-06  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2367  CDS  NC_011886  2658970  2659953  984  3-oxoacyl-(acyl-carrier-protein) synthase III  YP_002488421  n/a    decreased coverage  8.11483e-08  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2372  CDS  NC_011886  2663748  2664404  657  hypothetical protein  YP_002488426  n/a    decreased coverage  5.18182e-08  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2373  CDS  NC_011886  2664500  2664964  465  ferric uptake regulator, Fur family  YP_002488427  n/a    decreased coverage  4.16204e-08  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2483  CDS  NC_011886  2800508  2801272  765  polar amino acid ABC transporter, inner membrane subunit  YP_002488537  n/a    decreased coverage  2.49408e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2484  CDS  NC_011886  2801269  2802006  738  ABC transporter related  YP_002488538  n/a    decreased coverage  2.66476e-11  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2575  CDS  NC_011886  2893158  2897360  4203  hypothetical protein  YP_002488629  n/a    decreased coverage  1.81544e-07  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2715  CDS  NC_011886  3040587  3041612  1026  6-phosphofructokinase  YP_002488769  n/a    decreased coverage  0.000377285  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2764  CDS  NC_011886  3088849  3089226  378  hypothetical protein  YP_002488818  n/a    decreased coverage  9.86388e-05  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2816  CDS  NC_011886  3143485  3144642  1158  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein  YP_002488870  n/a    decreased coverage  8.63815e-05  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2817  CDS  NC_011886  3144904  3146343  1440  sulfate adenylyltransferase, large subunit  YP_002488871  n/a    decreased coverage  0.000103117  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2818  CDS  NC_011886  3146343  3147311  969  sulfate adenylyltransferase subunit 2  YP_002488872  n/a    decreased coverage  6.64267e-05  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_2999  CDS  NC_011886  3344495  3344977  483  FlgN family protein  YP_002489049  n/a    decreased coverage  0.000203065  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3000  CDS  NC_011886  3345008  3346426  1419  flagellar hook-associated protein FlgK  YP_002489050  n/a    decreased coverage  0.000379276  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3001  CDS  NC_011886  3346430  3347314  885  flagellar hook-associated protein 3  YP_002489051  n/a    decreased coverage  0.00024747  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3008  CDS  NC_011886  3352815  3353726  912  helix-turn-helix domain protein  YP_002489058  n/a    decreased coverage  0.000207491  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3010  CDS  NC_011886  3354750  3355580  831  short-chain dehydrogenase/reductase SDR  YP_002489060  n/a    decreased coverage  0.000215509  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3130  CDS  NC_011886  3478968  3479912  945  binding-protein-dependent transport systems inner membrane component  YP_002489180  n/a    decreased coverage  0.00699527  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3131  CDS  NC_011886  3480280  3481548  1269  extracellular solute-binding protein family 1  YP_002489181  n/a    decreased coverage  0.00803878  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3504  CDS  NC_011886  3880498  3881451  954  tRNA (guanine-N(7)-)-methyltransferase  YP_002489549  n/a    decreased coverage  0.000485637  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3505  CDS  NC_011886  3881486  3881932  447  hypothetical protein  YP_002489550  n/a    decreased coverage  0.000669281  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Achl_3506  CDS  NC_011886  3881937  3883517  1581  hypothetical protein  YP_002489551  n/a    decreased coverage  0.00143651  Arthrobacter chlorophenolicus A6  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>