22 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pnec_0016  CDS  NC_010531  16688  17563  876  F0F1 ATP synthase subunit A  YP_001796960  decreased coverage  2.60212e-11  hitchhiker  0.000221362  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0047  CDS  NC_010531  54074  56176  2103  elongation factor G  YP_001796989  hitchhiker  2.9839e-09  decreased coverage  6.96868e-24  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0048  CDS  NC_010531  56222  57412  1191  elongation factor Tu  YP_001796990  unclonable  2.6192e-12  decreased coverage  9.37064e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0049  CDS  NC_010531  57529  57840  312  30S ribosomal protein S10  YP_001796991  unclonable  2.91739e-14  decreased coverage  2.20907e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0050  CDS  NC_010531  58039  58695  657  50S ribosomal protein L3  YP_001796992  unclonable  1.05165e-13  decreased coverage  1.58179e-26  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0096  CDS  NC_010531  91412  92200  789  protein of unknown function DUF140  YP_001797032  decreased coverage  1.50492e-05  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0097  CDS  NC_010531  92222  92704  483  Mammalian cell entry related domain protein  YP_001797033  decreased coverage  1.48019e-05  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0186  CDS  NC_010531  167672  169012  1341  cell division protein FtsZ  YP_001797105  decreased coverage  1.03682e-10  normal  0.437906  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0223  CDS  NC_010531  204624  205808  1185  ribonucleotide-diphosphate reductase subunit beta  YP_001797134  decreased coverage  2.60212e-11  normal  0.80957  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0224  CDS  NC_010531  206141  206371  231  hypothetical protein  YP_001797135  decreased coverage  5.58305e-13  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0330  CDS  NC_010531  292044  293519  1476  mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase  YP_001797236  decreased coverage  0.00801876  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0467  CDS  NC_010531  415171  417327  2157  excinuclease ABC subunit B  YP_001797348  decreased coverage  0.00244529  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0509  CDS  NC_010531  460022  460732  711  uridylate kinase  YP_001797386  decreased coverage  0.00424433  normal  0.390175  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0549  CDS  NC_010531  488837  489880  1044  hypothetical protein  YP_001797423  decreased coverage  0.00564002  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0661  CDS  NC_010531  573363  574064  702  protein of unknown function UPF0005  YP_001797512  decreased coverage  0.00649456  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0994  CDS  NC_010531  863250  864101  852  PHP domain protein  YP_001797791  decreased coverage  1.6176e-11  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_0995  CDS  NC_010531  864111  865214  1104  AFG1-family ATPase  YP_001797792  decreased coverage  4.10235e-11  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1088  CDS  NC_010531  944921  947617  2697  pyruvate dehydrogenase subunit E1  YP_001797876  decreased coverage  8.43212e-06  normal  0.805293  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1315  CDS  NC_010531  1138272  1140980  2709  DNA gyrase subunit A  YP_001798049  decreased coverage  8.57491e-07  decreased coverage  3.46296e-25  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1465  CDS  NC_010531  1267116  1267319  204  cold-shock DNA-binding domain protein  YP_001798173  decreased coverage  0.000499386  normal  0.887495  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1550  CDS  NC_010531  1350149  1350298  150  hypothetical protein  YP_001798246  decreased coverage  2.14674e-11  normal  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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Pnec_1786  CDS  NC_010531  1559901  1560167  267  ribonuclease P protein component  YP_001798452  decreased coverage  0.00873634  normal  0.269428  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria 
 
 
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