32 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bfae_00580  CDS  NC_013172  58922  59893  972  3-hydroxyacyl-CoA dehydrogenase  YP_003153532  decreased coverage  0.000379628  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_09940    NC_013172  1120734  1122378  1645      decreased coverage  0.00315505  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_10450  CDS  NC_013172  1172443  1175259  2817  asparagine synthase, glutamine-hydrolyzing  YP_003154483  decreased coverage  0.00957139  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_10700  CDS  NC_013172  1201860  1203128  1269  DNA repair nucleotidyltransferase/DNA polymerase  YP_003154508  decreased coverage  0.00310871  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_10850  CDS  NC_013172  1220770  1221504  735  conserved hypothetical protein TIGR00726  YP_003154523  decreased coverage  0.00949972  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_10940  CDS  NC_013172  1227631  1230729  3099  alpha-mannosidase  YP_003154532  decreased coverage  0.00976973  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_11600  CDS  NC_013172  1312563  1313240  678  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  YP_003154596  decreased coverage  0.00120804  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_11610  CDS  NC_013172  1313276  1314565  1290  protein kinase family protein  YP_003154597  decreased coverage  0.00060077  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_12870  CDS  NC_013172  1449127  1450032  906  hypothetical protein  YP_003154720  decreased coverage  0.0057272  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_12880  CDS  NC_013172  1450029  1450904  876  pantothenate synthetase  YP_003154721  decreased coverage  0.00593935  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_13490  CDS  NC_013172  1515229  1516602  1374  NADH dehydrogenase, FAD-containing subunit  YP_003154779  decreased coverage  0.000897572  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_14840  CDS  NC_013172  1672883  1673281  399  phosphoribosyl-AMP cyclohydrolase  YP_003154905  decreased coverage  2.56661e-06  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_15030  CDS  NC_013172  1692877  1693959  1083  3-dehydroquinate synthase  YP_003154923  decreased coverage  0.0034705  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_15210  CDS  NC_013172  1714010  1715212  1203  phosphoglycerate kinase  YP_003154940  decreased coverage  0.00329101  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_16760  CDS  NC_013172  1882617  1882865  249  acyl carrier protein  YP_003155090  decreased coverage  0.00765703  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_17020  CDS  NC_013172  1904133  1905428  1296  ABC-type sugar transport system, periplasmic component  YP_003155113  decreased coverage  0.00301962  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_17190  CDS  NC_013172  1922242  1923168  927  transcriptional regulator  YP_003155130  decreased coverage  0.00132066  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_17740  CDS  NC_013172  1989087  1990082  996  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  YP_003155184  decreased coverage  0.00436739  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_18840  CDS  NC_013172  2110147  2111694  1548  uroporphyrin-III C-methyltransferase  YP_003155290  decreased coverage  0.00867929  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_18900  CDS  NC_013172  2119238  2120062  825  acetyltransferase  YP_003155296  decreased coverage  0.00834372  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_19040  CDS  NC_013172  2137104  2139131  2028  glycosidase  YP_003155310  decreased coverage  0.000683856  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_19570  CDS  NC_013172  2199202  2199831  630  superoxide dismutase  YP_003155361  decreased coverage  0.00440124  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_20440  CDS  NC_013172  2286214  2286960  747  hypothetical protein  YP_003155441  decreased coverage  0.00702652  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_21400  CDS  NC_013172  2399433  2399882  450  acyl dehydratase  YP_003155537  decreased coverage  1.86279e-05  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_21410  CDS  NC_013172  2400060  2400230  171  LSU ribosomal protein L33P  YP_003155538  decreased coverage  9.44878e-06  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_22070  CDS  NC_013172  2481156  2481965  810  predicted permease  YP_003155598  decreased coverage  0.00137949  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_22520  CDS  NC_013172  2529895  2532141  2247  choline/carnitine/betaine transport  YP_003155641  decreased coverage  0.00223968  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_25160  CDS  NC_013172  2806496  2807131  636  multisubunit Na+/H+ antiporter, MnhF subunit  YP_003155888  decreased coverage  0.0093627  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_25300  CDS  NC_013172  2823764  2825053  1290  O-acetylhomoserine sulfhydrolase  YP_003155901  decreased coverage  0.000552662  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_25310  CDS  NC_013172  2825185  2826942  1758  ATPase component of ABC transporters with duplicated ATPase domain  YP_003155902  decreased coverage  0.00340355  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_25620  CDS  NC_013172  2861433  2862572  1140  phosphate-binding protein  YP_003155933  decreased coverage  0.00516886  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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Bfae_26090  CDS  NC_013172  2901164  2903665  2502  helicase family protein with metal-binding cysteine cluster  YP_003155974  decreased coverage  0.00586248  n/a    Brachybacterium faecium DSM 4810  Bacteria 
 
 
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