128 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Amir_0320  CDS  NC_013093  349936  351012  1077  NADH dehydrogenase (quinone)  YP_003098135  decreased coverage  0.00131388  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0335  CDS  NC_013093  364370  366928  2559  ATPase AAA-2 domain protein  YP_003098150  decreased coverage  0.00535143  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0415  CDS  NC_013093  453216  453383  168  hypothetical protein  YP_003098228  decreased coverage  0.00689765  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0416  CDS  NC_013093  453387  453620  234  hypothetical protein  YP_003098229  decreased coverage  0.00717555  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0417  CDS  NC_013093  453617  453964  348  hypothetical protein  YP_003098230  decreased coverage  0.0094002  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0418  CDS  NC_013093  453918  454655  738  short-chain dehydrogenase/reductase SDR  YP_003098231  decreased coverage  0.00843006  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0419  CDS  NC_013093  454677  455330  654  transcriptional regulator, TetR family  YP_003098232  decreased coverage  0.00785696  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0420  CDS  NC_013093  455336  456040  705  putative hydrolase protein  YP_003098233  decreased coverage  0.00809324  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0517  CDS  NC_013093  556763  557443  681  hypothetical protein  YP_003098330  decreased coverage  3.35621e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0537  CDS  NC_013093  578435  580219  1785  hypothetical protein  YP_003098350  decreased coverage  1.79948e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0538  CDS  NC_013093  580973  582172  1200  N-isopropylammelide isopropylaminohydrolase  YP_003098351  decreased coverage  2.64228e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0759  CDS  NC_013093  837810  839711  1902  GTP-binding protein TypA  YP_003098567  decreased coverage  0.00250463  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0820  CDS  NC_013093  898676  899533  858  PHP domain protein  YP_003098627  decreased coverage  4.00643e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0821  CDS  NC_013093  899938  900777  840  hypothetical protein  YP_003098628  decreased coverage  6.66708e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_0859  CDS  NC_013093  946230  947879  1650  hypothetical protein  YP_003098666  decreased coverage  0.00278552  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1047  CDS  NC_013093  1162498  1165584  3087  Non-specific serine/threonine protein kinase  YP_003098849  decreased coverage  0.00746664  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1070  CDS  NC_013093  1187090  1188232  1143  hypothetical protein  YP_003098872  decreased coverage  0.000415583  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1178  CDS  NC_013093  1316811  1320125  3315  transcriptional regulator, LuxR family  YP_003098978  decreased coverage  0.00127631  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1179    NC_013093  1320198  1320562  365      decreased coverage  6.35075e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1306  CDS  NC_013093  1441947  1444025  2079  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_003099104  decreased coverage  0.00348549  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1330  CDS  NC_013093  1471751  1472449  699  nicotinamide mononucleotide transporter PnuC  YP_003099128  decreased coverage  3.81613e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1433  CDS  NC_013093  1584009  1584506  498  Peptidoglycan-binding LysM  YP_003099230  decreased coverage  0.00640605  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1606  CDS  NC_013093  1768937  1769398  462  MaoC domain protein dehydratase  YP_003099401  decreased coverage  0.00168031  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1750  CDS  NC_013093  1919236  1920591  1356  40-residue YVTN family beta-propeller repeat protein  YP_003099544  decreased coverage  0.000566962  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1751  CDS  NC_013093  1921062  1922324  1263  major facilitator superfamily MFS_1  YP_003099545  decreased coverage  0.00152949  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1795  CDS  NC_013093  1976134  1977273  1140  xylose isomerase  YP_003099589  decreased coverage  0.000406384  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1889  CDS  NC_013093  2093898  2097158  3261  WGR domain-containing protein  YP_003099683  decreased coverage  0.00599399  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1930  CDS  NC_013093  2143103  2144605  1503  Alpha-N-arabinofuranosidase  YP_003099724  decreased coverage  0.00284341  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1969  CDS  NC_013093  2178843  2179700  858  Triacylglycerol lipase  YP_003099763  decreased coverage  1.0339e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1970  CDS  NC_013093  2180087  2182594  2508  transcriptional regulator, LuxR family  YP_003099764  decreased coverage  1.57383e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1998  CDS  NC_013093  2213059  2213967  909  dTDP-4-dehydrorhamnose reductase  YP_003099792  decreased coverage  8.98814e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_1999  CDS  NC_013093  2214258  2215532  1275  major facilitator superfamily MFS_1  YP_003099793  decreased coverage  1.99597e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2096  CDS  NC_013093  2318395  2318772  378  protein of unknown function DUF1696  YP_003099887  decreased coverage  0.00367109  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2097  CDS  NC_013093  2318920  2319465  546  hypothetical protein  YP_003099888  decreased coverage  0.00590505  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2107  CDS  NC_013093  2330391  2332616  2226  elongation factor G  YP_003099898  decreased coverage  0.000230841  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2141  CDS  NC_013093  2366708  2367310  603  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_003099932  decreased coverage  5.50599e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2142  CDS  NC_013093  2367373  2367750  378  putative transmembrane transport protein  YP_003099933  decreased coverage  2.76265e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2152  CDS  NC_013093  2376701  2377435  735  ANTAR domain protein with unknown sensor  YP_003099943  decreased coverage  5.02711e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2257  CDS  NC_013093  2500259  2501308  1050  5'-3' exonuclease  YP_003100043  decreased coverage  9.70599e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2363  CDS  NC_013093  2619568  2619948  381  response regulator receiver protein  YP_003100149  decreased coverage  3.90057e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2375  CDS  NC_013093  2636829  2637188  360  hypothetical protein  YP_003100161  decreased coverage  5.5116e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2376  CDS  NC_013093  2637274  2637786  513  transcriptional regulator, MarR family  YP_003100162  decreased coverage  6.79791e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2377  CDS  NC_013093  2637971  2638822  852  transcriptional regulator, XRE family  YP_003100163  decreased coverage  2.01287e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2378  CDS  NC_013093  2638942  2639841  900  short-chain dehydrogenase/reductase SDR  YP_003100164  decreased coverage  2.41123e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2379  CDS  NC_013093  2639910  2640227  318  hypothetical protein  YP_003100165  decreased coverage  3.48743e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2434  CDS  NC_013093  2701231  2702121  891  TM1410 hypothetical-related protein  YP_003100220  decreased coverage  0.00342831  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2435  CDS  NC_013093  2702403  2703164  762  transcriptional regulator, DeoR family  YP_003100221  decreased coverage  0.0079946  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2444  CDS  NC_013093  2714725  2715663  939  Alcohol dehydrogenase GroES domain protein  YP_003100230  decreased coverage  0.00100917  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2479  CDS  NC_013093  2751287  2751550  264  hypothetical protein  YP_003100265  decreased coverage  3.19988e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2480  CDS  NC_013093  2751597  2752313  717  putative integral membrane protein  YP_003100266  decreased coverage  1.14797e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2483  CDS  NC_013093  2766687  2768600  1914  hypothetical protein  YP_003100269  decreased coverage  8.55708e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2487  CDS  NC_013093  2772405  2773538  1134  serine/threonine protein kinase  YP_003100273  decreased coverage  3.5224e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2561  CDS  NC_013093  2891609  2894212  2604  hypothetical protein  YP_003100344  decreased coverage  0.00089878  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2562  CDS  NC_013093  2894209  2895429  1221  hypothetical protein  YP_003100345  decreased coverage  0.00055451  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2674  CDS  NC_013093  3012438  3013211  774  hypothetical protein  YP_003100455  decreased coverage  4.23316e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2700  CDS  NC_013093  3097790  3099079  1290  histidine kinase  YP_003100481  decreased coverage  3.94923e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2715  CDS  NC_013093  3113968  3114873  906  Luciferase-like monooxygenase  YP_003100496  decreased coverage  1.36256e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2716  CDS  NC_013093  3114940  3117765  2826  transcriptional regulator, LuxR family  YP_003100497  decreased coverage  4.19619e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2760  CDS  NC_013093  3179625  3182093  2469  protein of unknown function DUF214  YP_003100539  decreased coverage  0.000148915  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2790  CDS  NC_013093  3215811  3218000  2190  hypothetical protein  YP_003100568  decreased coverage  0.00546434  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2954  CDS  NC_013093  3409582  3413022  3441  transcriptional regulator, putative ATPase, winged helix family  YP_003100721  decreased coverage  0.00262132  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_2967  CDS  NC_013093  3431766  3432920  1155  aminotransferase class I and II  YP_003100733  decreased coverage  0.0077692  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3044  CDS  NC_013093  3519594  3520670  1077  rhamnose ABC transporter, periplasmic rhamnose- binding protein  YP_003100809  decreased coverage  0.00338498  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3178  CDS  NC_013093  3668122  3671346  3225  transcriptional regulator, LuxR family  YP_003100935  decreased coverage  0.00421599  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3244  CDS  NC_013093  3779653  3780615  963  glycoside hydrolase family 25  YP_003100997  decreased coverage  0.0027526  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3307  CDS  NC_013093  3881859  3882383  525  isochorismatase hydrolase  YP_003101059  decreased coverage  3.23098e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3308  CDS  NC_013093  3882421  3885438  3018  transcriptional regulator, winged helix family  YP_003101060  decreased coverage  7.6041e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3358  CDS  NC_013093  3932954  3934537  1584  hypothetical protein  YP_003101106  decreased coverage  0.00327264  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3397  CDS  NC_013093  3970759  3972315  1557  Amidohydrolase 3  YP_003101141  decreased coverage  0.00503125  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3441  CDS  NC_013093  4005370  4006656  1287  monooxygenase FAD-binding  YP_003101184  decreased coverage  6.58933e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3442  CDS  NC_013093  4006769  4007518  750  transcriptional regulator, DeoR family  YP_003101185  decreased coverage  1.77835e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3454  CDS  NC_013093  4018707  4019609  903  peptidase U61 LD-carboxypeptidase A  YP_003101197  decreased coverage  1.29902e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3455  CDS  NC_013093  4019625  4019768  144  hypothetical protein  YP_003101198  decreased coverage  1.27896e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3456  CDS  NC_013093  4019738  4020271  534  hypothetical protein  YP_003101199  decreased coverage  4.30117e-08  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3551  CDS  NC_013093  4124841  4126031  1191  peptidase S8/S53 subtilisin kexin sedolisin  YP_003101288  decreased coverage  0.00861424  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3567  CDS  NC_013093  4142749  4143657  909  Alpha/beta hydrolase fold-3 domain protein  YP_003101303  decreased coverage  0.000877582  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3569  CDS  NC_013093  4145071  4146525  1455  glycoside hydrolase family 43  YP_003101305  decreased coverage  0.0058203  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3751  CDS  NC_013093  4409326  4411908  2583  hypothetical protein  YP_003101480  decreased coverage  0.00297726  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3770  CDS  NC_013093  4434884  4436146  1263  major facilitator superfamily MFS_1  YP_003101498  decreased coverage  0.00377745  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3771  CDS  NC_013093  4436143  4437537  1395  Pyridoxal-dependent decarboxylase  YP_003101499  decreased coverage  0.0013231  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3772  CDS  NC_013093  4437608  4438915  1308  hypothetical protein  YP_003101500  decreased coverage  0.00313382  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3783  CDS  NC_013093  4445068  4445277  210  hypothetical protein  YP_003101510  decreased coverage  0.00138484  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3788  CDS  NC_013093  4447658  4447924  267  hypothetical protein  YP_003101514  decreased coverage  0.000908085  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3842  CDS  NC_013093  4506593  4507129  537  putative signal transduction protein with EFhand domain  YP_003101567  decreased coverage  0.00258503  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3911  CDS  NC_013093  4590595  4591464  870  transport system permease protein  YP_003101628  decreased coverage  1.92945e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3912  CDS  NC_013093  4591490  4592509  1020  periplasmic binding protein  YP_003101629  decreased coverage  2.29928e-07  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_3950  CDS  NC_013093  4631056  4631766  711  hypothetical protein  YP_003101663  decreased coverage  0.00763175  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4022  CDS  NC_013093  4722188  4724440  2253  hypothetical protein  YP_003101731  decreased coverage  0.000110855  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4051  CDS  NC_013093  4763398  4764075  678  two component transcriptional regulator, LuxR family  YP_003101758  decreased coverage  0.00308286  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4072  CDS  NC_013093  4782775  4784049  1275  protein of unknown function DUF214  YP_003101774  decreased coverage  3.14908e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4252  CDS  NC_013093  5011299  5011709  411  hypothetical protein  YP_003101953  decreased coverage  0.00339299  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4253  CDS  NC_013093  5011825  5012421  597  Galactoside O-acetyltransferase  YP_003101954  decreased coverage  0.00506408  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4267  CDS  NC_013093  5030801  5031103  303  hypothetical protein  YP_003101968  decreased coverage  0.00850389  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4360  CDS  NC_013093  5152509  5153840  1332  glycosyl transferase family 28  YP_003102057  decreased coverage  4.48703e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4411    NC_013093  5208585  5209697  1113      decreased coverage  0.000691245  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4519  CDS  NC_013093  5360186  5361508  1323  hypothetical protein  YP_003102209  decreased coverage  0.00148768  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4520  CDS  NC_013093  5361505  5362284  780  hypothetical protein  YP_003102210  decreased coverage  0.00166177  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4542  CDS  NC_013093  5383248  5383601  354  hypothetical protein  YP_003102230  decreased coverage  0.00934764  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4738  CDS  NC_013093  5649849  5651000  1152  hypothetical protein  YP_003102413  decreased coverage  3.91664e-05  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
Amir_4821  CDS  NC_013093  5740013  5741146  1134  glycerate kinase  YP_003102494  decreased coverage  3.02317e-06  n/a    Actinosynnema mirum DSM 43827  Bacteria 
 
 
-
 
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