39 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Emin_0119  CDS  NC_010644  126074  126679  606  TetR family transcriptional regulator  YP_001875022  decreased coverage  5.66826e-09  decreased coverage  2.41144e-12  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0170  CDS  NC_010644  184806  185243  438  RDD domain-containing protein  YP_001875071  decreased coverage  5.34855e-09  decreased coverage  0.00967799  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0171  CDS  NC_010644  185266  185688  423  RDD domain-containing protein  YP_001875072  decreased coverage  6.52856e-08  decreased coverage  0.0096302  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0172  CDS  NC_010644  185768  186811  1044  hypothetical protein  YP_001875073  decreased coverage  2.63309e-06  normal  0.0370984  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0224  CDS  NC_010644  239287  241257  1971  DNA methylase N-4/N-6 domain-containing protein  YP_001875123  normal  decreased coverage  1.13178e-05  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0237  CDS  NC_010644  255971  256804  834  hypothetical protein  YP_001875136  decreased coverage  6.48685e-06  normal  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0307  CDS  NC_010644  329133  329813  681  methyltransferase  YP_001875204  decreased coverage  4.99795e-08  hitchhiker  4.53618e-06  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0311  CDS  NC_010644  332146  332628  483  hypothetical protein  YP_001875208  normal  0.0535887  decreased coverage  6.45484e-07  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0378  CDS  NC_010644  403637  404194  558  LemA family protein  YP_001875272  unclonable  4.07408e-10  decreased coverage  1.42653e-16  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0450  CDS  NC_010644  483570  484046  477  hypothetical protein  YP_001875344  decreased coverage  7.42352e-09  hitchhiker  4.66691e-09  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0451  CDS  NC_010644  484220  485131  912  hypothetical protein  YP_001875345  hitchhiker  2.21433e-07  decreased coverage  3.70346e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0452  CDS  NC_010644  485128  485934  807  hypothetical protein  YP_001875346  hitchhiker  3.10711e-05  decreased coverage  1.90232e-09  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0483  CDS  NC_010644  514984  516753  1770  hypothetical protein  YP_001875376  decreased coverage  1.47239e-07  normal  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0527  CDS  NC_010644  576255  577607  1353  glutamate dehydrogenase  YP_001875419  decreased coverage  2.75062e-06  normal  0.153307  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0536  CDS  NC_010644  588143  589744  1602  hypothetical protein  YP_001875428  decreased coverage  0.000617435  normal  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0606  CDS  NC_010644  662074  662544  471  Tfp pilus assembly protein PilE-like protein  YP_001875498  decreased coverage  1.01189e-05  hitchhiker  7.68083e-07  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0723  CDS  NC_010644  799795  800481  687  hypothetical protein  YP_001875615  decreased coverage  1.54861e-08  hitchhiker  2.32887e-07  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0812  CDS  NC_010644  889695  894326  4632  putative PAS/PAC sensor protein  YP_001875704  normal  decreased coverage  1.29345e-14  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0813  CDS  NC_010644  894555  894713  159  hypothetical protein  YP_001875705  normal  0.069074  decreased coverage  6.33816e-16  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0872  CDS  NC_010644  961114  961872  759  SseB family protein  YP_001875764  normal  0.179589  decreased coverage  2.16003e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0876  CDS  NC_010644  964062  965105  1044  dienelactone hydrolase  YP_001875768  hitchhiker  5.09815e-05  decreased coverage  2.73866e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0877  CDS  NC_010644  965255  966151  897  AraC family transcriptional regulator  YP_001875769  hitchhiker  1.57744e-07  decreased coverage  1.98967e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0879  CDS  NC_010644  967212  968990  1779  ABC transporter related  YP_001875771  unclonable  7.88557e-09  decreased coverage  3.12557e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0880  CDS  NC_010644  968987  970726  1740  ABC transporter related  YP_001875772  unclonable  1.05658e-08  decreased coverage  3.23108e-10  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0981  CDS  NC_010644  1070898  1072157  1260  hypothetical protein  YP_001875871  hitchhiker  4.23266e-06  decreased coverage  3.25567e-17  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0982  CDS  NC_010644  1072154  1072339  186  hypothetical protein  YP_001875872  hitchhiker  2.66163e-07  decreased coverage  6.55366e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0987  CDS  NC_010644  1073649  1074434  786  XRE family transcriptional regulator  YP_001875877  decreased coverage  1.24238e-07  decreased coverage  8.98334e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_0988  CDS  NC_010644  1074615  1075481  867  hypothetical protein  YP_001875878  hitchhiker  2.24979e-05  decreased coverage  1.1597e-17  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1208  CDS  NC_010644  1305593  1306354  762  Flp pilus assembly protein CpaB-like protein  YP_001876095  hitchhiker  2.07923e-05  decreased coverage  8.37848e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1209  CDS  NC_010644  1306407  1306832  426  hypothetical protein  YP_001876096  hitchhiker  1.80938e-06  decreased coverage  4.97477e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1210  CDS  NC_010644  1306886  1307083  198  hypothetical protein  YP_001876097  hitchhiker  1.29075e-06  decreased coverage  4.16934e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1211  CDS  NC_010644  1307125  1307304  180  hypothetical protein  YP_001876098  hitchhiker  2.13259e-07  decreased coverage  5.33399e-18  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1212  CDS  NC_010644  1307336  1308310  975  hypothetical protein  YP_001876099  unclonable  9.0453e-10  decreased coverage  1.89634e-17  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1213  CDS  NC_010644  1308324  1312517  4194  hypothetical protein  YP_001876100  normal  0.0125972  decreased coverage  1.40245e-15  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1267  CDS  NC_010644  1367360  1368136  777  TraR/DksA family transcriptional regulator  YP_001876154  decreased coverage  1.20418e-08  normal  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1427  CDS  NC_010644  1515950  1520107  4158  DNA-directed RNA polymerase, beta' subunit  YP_001876313  decreased coverage  0.000823034  normal  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1524  CDS  NC_010644  1615615  1616094  480  Tfp pilus assembly protein PilE-like protein  YP_001876408  decreased coverage  5.84644e-08  unclonable  2.69753e-19  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1525  CDS  NC_010644  1616181  1617242  1062  recA protein  YP_001876409  decreased coverage  2.45316e-08  unclonable  4.38442e-19  Elusimicrobium minutum Pei191  Bacteria 
 
 
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Emin_1542  CDS  NC_010644  1636266  1637150  885  parB-like partition protein  YP_001876426  decreased coverage  1.60995e-08  unclonable  1.80022e-19  Elusimicrobium minutum Pei191  Bacteria 
 
 
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