35 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Aboo_0089  CDS  NC_013926  86701  88137  1437  FAD-dependent pyridine nucleotide-disulfide oxidoreductase  YP_003482463  decreased coverage  0.000828017  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0132  CDS  NC_013926  127831  130323  2493  hypothetical protein  YP_003482506  decreased coverage  0.00263601  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0173  CDS  NC_013926  185166  185879  714  ABC-2 type transporter  YP_003482547  decreased coverage  0.00869778  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0182  CDS  NC_013926  190038  190775  738  exosome complex exonuclease 1  YP_003482556  decreased coverage  2.82409e-05  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0183  CDS  NC_013926  190759  191451  693  K-like, type 1, subgroup  YP_003482557  decreased coverage  9.22938e-06  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0250  CDS  NC_013926  255320  256354  1035  glycosyl transferase family 2  YP_003482624  decreased coverage  4.44925e-08  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0253  CDS  NC_013926  259054  260361  1308  polysaccharide biosynthesis protein  YP_003482627  decreased coverage  1.23579e-06  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0340  CDS  NC_013926  344536  344940  405  protein of unknown function DUF35  YP_003482713  decreased coverage  2.62786e-05  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0407  CDS  NC_013926  406123  407709  1587  extracellular solute-binding protein family 5  YP_003482780  decreased coverage  0.00229954  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0464  CDS  NC_013926  452466  453785  1320  L-lysine 6-transaminase  YP_003482837  decreased coverage  0.00767316  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0536  CDS  NC_013926  520956  522011  1056  3-dehydroquinate synthase  YP_003482909  decreased coverage  6.95262e-09  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0571  CDS  NC_013926  550593  551066  474  small GTP-binding protein  YP_003482944  decreased coverage  6.8839e-09  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0572  CDS  NC_013926  551063  551932  870  tRNA intron endonuclease  YP_003482945  decreased coverage  7.53451e-13  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0617  CDS  NC_013926  592041  592892  852  peptidase S15  YP_003482990  decreased coverage  1.6795e-05  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0618  CDS  NC_013926  592886  593485  600  hypothetical protein  YP_003482991  decreased coverage  1.13896e-06  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0711  CDS  NC_013926  675286  676233  948  Transketolase central region  YP_003483084  decreased coverage  2.02012e-06  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0731  CDS  NC_013926  693596  694786  1191  Glycine C-acetyltransferase  YP_003483104  decreased coverage  0.000138233  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0749  CDS  NC_013926  710802  712019  1218  ammonium transporter  YP_003483120  decreased coverage  2.61873e-05  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_0773  CDS  NC_013926  731845  733632  1788  NADH/Ubiquinone/plastoquinone (complex I)  YP_003483144  decreased coverage  0.00397311  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1004  CDS  NC_013926  965698  965997  300  hypothetical protein  YP_003483375  decreased coverage  1.87126e-15  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1005  CDS  NC_013926  966012  966212  201  hypothetical protein  YP_003483376  decreased coverage  1.13566e-15  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1006  CDS  NC_013926  966209  966406  198  hypothetical protein  YP_003483377  decreased coverage  1.28984e-15  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1007  CDS  NC_013926  966403  966594  192  hypothetical protein  YP_003483378  decreased coverage  1.30329e-15  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1008  CDS  NC_013926  966591  966782  192  K08849 mixed lineage kinase domain-like protein  YP_003483379  decreased coverage  1.09155e-15  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1009  CDS  NC_013926  966779  968089  1311  hypothetical protein  YP_003483380  decreased coverage  3.66199e-12  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1013  CDS  NC_013926  972531  973193  663  hypothetical protein  YP_003483384  decreased coverage  8.58271e-11  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1024  CDS  NC_013926  984518  985660  1143  CRISPR-associated RAMP protein, Csm5 family  YP_003483395  decreased coverage  3.4991e-07  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1090  CDS  NC_013926  1045102  1047789  2688  DNA-directed RNA polymerase subunit A'  YP_003483461  decreased coverage  4.57669e-05  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1094  CDS  NC_013926  1052546  1052908  363  diacylglycerol kinase  YP_003483465  decreased coverage  0.000224255  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1115  CDS  NC_013926  1068811  1070496  1686  Aldehyde ferredoxin oxidoreductase  YP_003483486  decreased coverage  0.000328009  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1135  CDS  NC_013926  1088237  1089904  1668  glutamate formiminotransferase  YP_003483506  decreased coverage  2.59237e-07  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1295  CDS  NC_013926  1241609  1242268  660  putative cytoplasmic protein  YP_003483665  decreased coverage  0.00243456  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1296  CDS  NC_013926  1242290  1243573  1284  proteinase inhibitor I4 serpin  YP_003483666  decreased coverage  0.00386806  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_1468  CDS  NC_013926  1407419  1408636  1218  guanine deaminase  YP_003483836  decreased coverage  0.00567224  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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Aboo_R0035  tRNA  NC_013926  1408663  1408734  72  tRNA-Cys    decreased coverage  0.00020868  n/a    Aciduliprofundum boonei T469  Archaea 
 
 
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