57 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
SYO3AOP1_0082  CDS  NC_010730  91727  92743  1017  hypothetical protein  YP_001930284  decreased coverage  1.03691e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0083  CDS  NC_010730  92760  93038  279  cytochrome c oxidoreductase subunit B  YP_001930285  decreased coverage  2.80154e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0114  CDS  NC_010730  127602  128234  633  Phosphoglycerate mutase  YP_001930314  decreased coverage  1.10333e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0132  CDS  NC_010730  145187  146425  1239  transposase mutator type  YP_001930332  decreased coverage  0.000168301  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0144    NC_010730  158786  159772  987      decreased coverage  2.3312e-05  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0161  CDS  NC_010730  177848  178612  765  cytochrome c class I  YP_001930360  decreased coverage  2.07523e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0280  CDS  NC_010730  290086  290445  360  50S ribosomal protein L24  YP_001930479  decreased coverage  4.92144e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0281  CDS  NC_010730  290448  290816  369  50S ribosomal protein L14  YP_001930480  decreased coverage  5.23315e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0306  CDS  NC_010730  313497  314687  1191  elongation factor Tu  YP_001930505  decreased coverage  2.39655e-11  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0467  CDS  NC_010730  481057  482289  1233  hypothetical protein  YP_001930662  decreased coverage  6.68675e-11  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0471  CDS  NC_010730  483446  483817  372  hypothetical protein  YP_001930666  decreased coverage  6.40254e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0531  CDS  NC_010730  542343  543623  1281  hypothetical protein  YP_001930725  decreased coverage  0.00100701  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0540  CDS  NC_010730  557230  558144  915  ornithine carbamoyltransferase  YP_001930734  decreased coverage  6.71603e-07  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0637  CDS  NC_010730  656812  657156  345  hypothetical protein  YP_001930827  decreased coverage  2.66043e-14  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0675  CDS  NC_010730  694585  695877  1293  MiaB-like tRNA modifying enzyme YliG  YP_001930865  decreased coverage  0.00122823  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0694  CDS  NC_010730  712505  714745  2241  isocitrate dehydrogenase, NADP-dependent  YP_001930884  decreased coverage  0.00369778  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0717  CDS  NC_010730  740457  741824  1368  conserved hypothetical protein, putative cytochrome  YP_001930907  decreased coverage  1.11138e-11  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0727    NC_010730  754864  755578  715      decreased coverage  0.000611807  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0746  CDS  NC_010730  775279  776292  1014  histidine kinase  YP_001930933  decreased coverage  7.36417e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0789  CDS  NC_010730  827214  828122  909  transposase IS4 family protein  YP_001930976  decreased coverage  1.7402e-07  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0827  CDS  NC_010730  866345  866887  543  deoxycytidine triphosphate deaminase  YP_001931014  decreased coverage  1.19841e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0844  CDS  NC_010730  881965  882390  426  S-adenosylmethionine decarboxylase proenzyme  YP_001931031  decreased coverage  4.6314e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0914  CDS  NC_010730  950106  950909  804  fructose-bisphosphate aldolase  YP_001931095  decreased coverage  2.66803e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0957  CDS  NC_010730  990506  990991  486  TPR repeat-containing protein  YP_001931134  decreased coverage  8.43973e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0958  CDS  NC_010730  990946  991440  495  peptidase C39 bacteriocin processing  YP_001931135  decreased coverage  8.35793e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_0977  CDS  NC_010730  1009611  1010954  1344  tRNA modification GTPase TrmE  YP_001931152  decreased coverage  2.39803e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1056  CDS  NC_010730  1097720  1099027  1308  ATP citrate synthase, subunit 1  YP_001931229  decreased coverage  0.00742266  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1136  CDS  NC_010730  1186196  1186906  711  protein of unknown function DUF164  YP_001931304  decreased coverage  3.46068e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1160  CDS  NC_010730  1207285  1208781  1497  protease Do  YP_001931326  decreased coverage  3.36016e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1204  CDS  NC_010730  1254462  1255040  579  hypothetical protein  YP_001931369  decreased coverage  5.81481e-14  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1223  CDS  NC_010730  1273607  1274470  864  NAD-dependent epimerase/dehydratase  YP_001931388  decreased coverage  1.6396e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1283  CDS  NC_010730  1326067  1327122  1056  Glutamine--scyllo-inositol transaminase  YP_001931448  decreased coverage  8.37015e-08  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1284  CDS  NC_010730  1327125  1327511  387  hypothetical protein  YP_001931449  decreased coverage  1.90603e-08  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1353  CDS  NC_010730  1388731  1389465  735  protein of unknown function DUF399  YP_001931515  decreased coverage  2.00413e-11  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1372  CDS  NC_010730  1407646  1409751  2106  TonB-dependent receptor plug  YP_001931533  decreased coverage  6.23394e-06  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1395  CDS  NC_010730  1436996  1438408  1413  exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase  YP_001931556  decreased coverage  2.75666e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1396  CDS  NC_010730  1438426  1439646  1221  glycosyl transferase group 1  YP_001931557  decreased coverage  3.8163e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1397  CDS  NC_010730  1439656  1440762  1107  glycosyl transferase group 1  YP_001931558  decreased coverage  1.95676e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1398  CDS  NC_010730  1440904  1441884  981  protein containing nucleotide-diphospho-sugar transferase domain  YP_001931559  decreased coverage  7.35856e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1405  CDS  NC_010730  1446340  1447596  1257  polysaccharide biosynthesis protein  YP_001931564  decreased coverage  2.83826e-08  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1442  CDS  NC_010730  1486223  1487329  1107  oxygen-independent coproporphyrinogen III oxidase  YP_001931598  decreased coverage  6.16139e-08  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1462  CDS  NC_010730  1506169  1509990  3822  hypothetical protein  YP_001931618  decreased coverage  1.97368e-05  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1473  CDS  NC_010730  1519458  1522028  2571  surface antigen (D15)  YP_001931629  decreased coverage  1.79625e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1477  CDS  NC_010730  1524413  1525648  1236  diguanylate cyclase  YP_001931633  decreased coverage  1.24607e-10  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1478  CDS  NC_010730  1525913  1526725  813  histidine kinase  YP_001931634  decreased coverage  1.06668e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1535  CDS  NC_010730  1576227  1577036  810  thioredoxin  YP_001931690  decreased coverage  1.41662e-06  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1564  CDS  NC_010730  1613168  1614397  1230  hypothetical protein  YP_001931716  decreased coverage  3.46035e-07  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1591  CDS  NC_010730  1645406  1646101  696  DNA modification methylase  YP_001931743  decreased coverage  5.11148e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1592  CDS  NC_010730  1646126  1646266  141  hypothetical protein  YP_001931744  decreased coverage  2.62138e-13  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1593  CDS  NC_010730  1646259  1647041  783  hypothetical protein  YP_001931745  decreased coverage  7.91677e-12  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1646  CDS  NC_010730  1701546  1703483  1938  Tetratricopeptide domain protein  YP_001931798  decreased coverage  8.98881e-09  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1647  CDS  NC_010730  1703480  1704865  1386  hypothetical protein  YP_001931799  decreased coverage  1.85141e-07  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_1648  CDS  NC_010730  1704869  1705510  642  RNA polymerase, sigma 28 subunit, FliA/WhiG family  YP_001931800  decreased coverage  3.34042e-08  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0010  tRNA  NC_010730  314963  315045  83  tRNA-Tyr    decreased coverage  6.53583e-14  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0011  tRNA  NC_010730  315069  315141  73  tRNA-Thr    decreased coverage  6.46692e-14  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0018  tRNA  NC_010730  400572  400655  84  tRNA-Leu    decreased coverage  4.85581e-14  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
SYO3AOP1_R0041  tRNA  NC_010730  1186934  1187007  74  tRNA-Met    decreased coverage  1.54494e-11  n/a    Sulfurihydrogenibium sp. YO3AOP1  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>