78 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Adeg_0015  CDS  NC_013385  16221  16880  660  hypothetical protein  YP_003238042  decreased coverage  1.17096e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0045  CDS  NC_013385  39324  40436  1113  outer membrane efflux protein  YP_003238071  decreased coverage  0.00077566  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0046  CDS  NC_013385  40558  41961  1404  protein of unknown function UPF0236  YP_003238072  decreased coverage  0.00191865  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0112  CDS  NC_013385  101816  103039  1224  sodium:dicarboxylate symporter  YP_003238137  decreased coverage  2.89227e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0178  CDS  NC_013385  175080  175601  522  methylated-DNA/protein-cysteine methyltransferase  YP_003238200  decreased coverage  1.05952e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0190  CDS  NC_013385  185773  186345  573  nicotinate (nicotinamide) nucleotide adenylyltransferase  YP_003238212  decreased coverage  1.36715e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0191  CDS  NC_013385  186406  186669  264  RNP-1 like RNA-binding protein  YP_003238213  decreased coverage  7.94742e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0192  CDS  NC_013385  186787  187143  357  iojap-like protein  YP_003238214  decreased coverage  1.39024e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0211  CDS  NC_013385  210021  210449  429  50S ribosomal protein L13  YP_003238232  decreased coverage  1.31451e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0220    NC_013385  216767  217892  1126      decreased coverage  1.83549e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0235    NC_013385  234164  235568  1405      decreased coverage  3.39849e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0236  CDS  NC_013385  235683  236270  588  Resolvase domain protein  YP_003238255  decreased coverage  2.23632e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0273  CDS  NC_013385  269079  269249  171  hypothetical protein  YP_003238290  decreased coverage  9.98469e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0327  CDS  NC_013385  323206  324798  1593  transposase, IS605 OrfB family  YP_003238340  decreased coverage  0.00373732  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0368    NC_013385  371998  372813  816      decreased coverage  9.14909e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0392  CDS  NC_013385  401187  402149  963  protein of unknown function DUF81  YP_003238395  decreased coverage  2.6561e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0400  CDS  NC_013385  409962  411071  1110  PilT protein domain protein  YP_003238403  decreased coverage  2.34721e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0408  CDS  NC_013385  417177  417497  321  thiamineS protein  YP_003238411  decreased coverage  1.85395e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0428  CDS  NC_013385  437940  438104  165  hypothetical protein  YP_003238431  decreased coverage  6.8891e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0429  CDS  NC_013385  438133  439719  1587  hypothetical protein  YP_003238432  decreased coverage  8.32319e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0435  CDS  NC_013385  447295  447537  243  transcription attenuation protein MtrB  YP_003238438  decreased coverage  0.000796315  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0519    NC_013385  537634  537736  103      decreased coverage  0.000855576  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0520  CDS  NC_013385  537770  539365  1596  transposase, IS605 OrfB family  YP_003238519  decreased coverage  0.000180512  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0533  CDS  NC_013385  553119  553574  456  UspA domain protein  YP_003238532  decreased coverage  7.25599e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0548  CDS  NC_013385  568519  569625  1107  SufBD protein  YP_003238546  decreased coverage  3.12333e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0574  CDS  NC_013385  598874  599788  915  integrase family protein  YP_003238572  decreased coverage  6.63621e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0635  CDS  NC_013385  654696  656726  2031  ferrous iron transport protein B  YP_003238633  decreased coverage  3.06814e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0723  CDS  NC_013385  737679  737996  318  hypothetical protein  YP_003238720  decreased coverage  2.62267e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0725  CDS  NC_013385  738178  739773  1596  transposase, IS605 OrfB family  YP_003238721  decreased coverage  0.000155555  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0744  CDS  NC_013385  755108  755797  690  Resolvase domain protein  YP_003238740  decreased coverage  1.24642e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0778  CDS  NC_013385  785620  786264  645  SAF domain protein  YP_003238771  decreased coverage  4.67873e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0824    NC_013385  835839  836498  660      decreased coverage  0.000124895  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0870  CDS  NC_013385  884365  885183  819  hypothetical protein  YP_003238859  decreased coverage  1.35378e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0884  CDS  NC_013385  898291  899517  1227  aspartate kinase  YP_003238872  decreased coverage  3.37521e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0885  CDS  NC_013385  899621  900349  729  hypothetical protein  YP_003238873  decreased coverage  3.8146e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0887  CDS  NC_013385  900906  902438  1533  GMP synthase, large subunit  YP_003238875  decreased coverage  1.75854e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0918  CDS  NC_013385  937333  938508  1176  hypothetical protein  YP_003238904  decreased coverage  0.00435551  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0919  CDS  NC_013385  938637  939845  1209  molybdenum cofactor synthesis domain protein  YP_003238905  decreased coverage  0.00423779  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0950  CDS  NC_013385  963806  964711  906  Hsp33 protein  YP_003238936  decreased coverage  8.11074e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_0951  CDS  NC_013385  964775  965314  540  protein of unknown function DUF177  YP_003238937  decreased coverage  1.2525e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1069  CDS  NC_013385  1078695  1079927  1233  transposase, IS605 OrfB family  YP_003239046  decreased coverage  2.26138e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1070  CDS  NC_013385  1080741  1082081  1341  RNA-directed DNA polymerase (Reverse transcriptase)  YP_003239047  decreased coverage  2.76308e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1163  CDS  NC_013385  1179863  1181266  1404  protein of unknown function UPF0236  YP_003239130  decreased coverage  0.00489953  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1175  CDS  NC_013385  1194233  1195162  930  hypothetical protein  YP_003239139  decreased coverage  0.00374008  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1207  CDS  NC_013385  1223603  1224802  1200  sodium/hydrogen exchanger  YP_003239168  decreased coverage  1.56939e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1237  CDS  NC_013385  1248405  1249049  645  adenylate kinase  YP_003239198  decreased coverage  9.20741e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1282  CDS  NC_013385  1287355  1287756  402  protein of unknown function DUF322  YP_003239242  decreased coverage  6.7785e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1283  CDS  NC_013385  1287830  1289176  1347  acetyl-CoA carboxylase, biotin carboxylase  YP_003239243  decreased coverage  7.30053e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1376  CDS  NC_013385  1379994  1380659  666  hypothetical protein  YP_003239328  decreased coverage  4.21618e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1377  CDS  NC_013385  1380817  1381848  1032  hypothetical protein  YP_003239329  decreased coverage  1.7541e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1440  CDS  NC_013385  1443738  1446362  2625  alanyl-tRNA synthetase  YP_003239390  decreased coverage  0.000329754  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1447  CDS  NC_013385  1452185  1453981  1797  Cl- channel voltage-gated family protein  YP_003239394  decreased coverage  5.4528e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1458  CDS  NC_013385  1464637  1465797  1161  sodium/hydrogen exchanger  YP_003239404  decreased coverage  2.46002e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1530  CDS  NC_013385  1521245  1521496  252  hypothetical protein  YP_003239475  decreased coverage  1.00287e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1531  CDS  NC_013385  1521568  1525092  3525  DNA-directed RNA polymerase, beta' subunit  YP_003239476  decreased coverage  0.00270247  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1541  CDS  NC_013385  1535098  1535796  699  DNA repair protein RadC  YP_003239486  decreased coverage  8.97994e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1643  CDS  NC_013385  1627167  1629458  2292  copper amine oxidase domain protein  YP_003239586  decreased coverage  0.00153148  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1740    NC_013385  1733832  1734903  1072      decreased coverage  1.15615e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1793  CDS  NC_013385  1789638  1790462  825  beta-lactamase domain protein  YP_003239731  decreased coverage  0.000988324  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1824  CDS  NC_013385  1818285  1821122  2838  excinuclease ABC, A subunit  YP_003239760  decreased coverage  0.00152877  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1869  CDS  NC_013385  1868124  1869806  1683  transposase, IS605 OrfB family  YP_003239801  decreased coverage  4.05396e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1870    NC_013385  1869775  1870080  306      decreased coverage  1.25106e-06  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1871  CDS  NC_013385  1870145  1871143  999  biotin/acetyl-CoA-carboxylase ligase  YP_003239802  decreased coverage  3.12804e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1892  CDS  NC_013385  1893951  1895360  1410  Nitrite reductase (cytochrome; ammonia-forming)  YP_003239822  decreased coverage  6.6915e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1906  CDS  NC_013385  1909424  1909837  414  transcriptional regulator, BadM/Rrf2 family  YP_003239836  decreased coverage  4.82606e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1913  CDS  NC_013385  1919555  1919746  192  hypothetical protein  YP_003239843  decreased coverage  9.15773e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1937  CDS  NC_013385  1941820  1942938  1119  arsenical-resistance protein  YP_003239867  decreased coverage  5.66056e-05  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_1993  CDS  NC_013385  1996188  1997591  1404  protein of unknown function UPF0236  YP_003239921  decreased coverage  7.79773e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_2138  CDS  NC_013385  2121101  2121388  288  ribosomal protein S6  YP_003240065  decreased coverage  4.3387e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_2164  CDS  NC_013386  15086  15325  240  hypothetical protein  YP_003240091  decreased coverage  3.54539e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_2177  CDS  NC_013386  24630  25496  867  Domain of unknown function DUF1814  YP_003240103  decreased coverage  2.11086e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0003  tRNA  NC_013385  103260  103334  75  tRNA-Val    decreased coverage  5.79556e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0010  tRNA  NC_013385  417508  417584  77  tRNA-Met    decreased coverage  5.63126e-10  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0022  rRNA  NC_013385  674081  675648  1568  16S ribosomal RNA    decreased coverage  0.000353945  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0028  tRNA  NC_013385  902502  902577  76  tRNA-Thr    decreased coverage  1.54592e-08  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0029  tRNA  NC_013385  1080066  1080139  74  tRNA-Gln    decreased coverage  3.92756e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0030  tRNA  NC_013385  1080145  1080220  76  tRNA-Glu    decreased coverage  3.92756e-09  n/a    Ammonifex degensii KC4  Bacteria 
 
 
-
 
Adeg_R0034  tRNA  NC_013385  1249109  1249186  78  tRNA-Pro    decreased coverage  5.37169e-07  n/a    Ammonifex degensii KC4  Bacteria 
 
 
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