33 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
MmarC7_0004  CDS  NC_009637  5395  7932  2538  hypothetical protein  YP_001329228  decreased coverage  0.00169415  unclonable  3.10884e-08  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0015  CDS  NC_009637  22468  22908  441  hypothetical protein  YP_001329238  decreased coverage  0.00905926  hitchhiker  0.000816539  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0041  CDS  NC_009637  46537  47091  555  resolvase domain-containing protein  YP_001329263  normal  decreased coverage  5.73211e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0042  CDS  NC_009637  47255  48205  951  hypothetical protein  YP_001329264  normal  decreased coverage  6.6001e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0082  CDS  NC_009637  102506  103111  606  ribonuclease H  YP_001329303  hitchhiker  0.000796029  decreased coverage  6.38977e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0083  CDS  NC_009637  103463  104131  669  hypothetical protein  YP_001329304  decreased coverage  0.000843512  decreased coverage  7.53316e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0085  CDS  NC_009637  104681  105268  588  TetR family transcriptional regulator  YP_001329306  hitchhiker  0.0016021  decreased coverage  7.22764e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0092  CDS  NC_009637  109402  109875  474  peptide methionine sulfoxide reductase  YP_001329313  normal  0.570537  decreased coverage  6.98173e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0093  CDS  NC_009637  110123  110746  624  lysine exporter protein LysE/YggA  YP_001329314  normal  0.60262  decreased coverage  7.34751e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0174  CDS  NC_009637  185211  187970  2760  CheA signal transduction histidine kinase  YP_001329395  decreased coverage  0.00798527  normal  0.714787  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0277  CDS  NC_009637  293719  294120  402  hypothetical protein  YP_001329498  normal  0.022466  decreased coverage  1.80367e-06  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0333  CDS  NC_009637  347058  347891  834  glycosyl transferase family protein  YP_001329554  normal  0.0642645  decreased coverage  5.84386e-06  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0334  CDS  NC_009637  347878  348675  798  hypothetical protein  YP_001329555  normal  0.0356311  decreased coverage  8.99719e-07  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0341  CDS  NC_009637  354262  355764  1503  polysaccharide biosynthesis protein  YP_001329561  normal  0.467363  decreased coverage  1.00108e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0636  CDS  NC_009637  638204  639250  1047  aspartate-semialdehyde dehydrogenase  YP_001329854  decreased coverage  0.0076377  normal  0.238607  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0650  CDS  NC_009637  653503  653718  216  50S ribosomal protein L29P  YP_001329868  hitchhiker  3.28049e-08  decreased coverage  6.08142e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0651  CDS  NC_009637  653802  654110  309  translation initiation factor Sui1  YP_001329869  decreased coverage  4.33453e-10  decreased coverage  6.13351e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0652  CDS  NC_009637  654178  654474  297  ribonuclease P protein component 1  YP_001329870  hitchhiker  2.74368e-07  decreased coverage  5.93448e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0653  CDS  NC_009637  654639  654968  330  30S ribosomal protein S17P  YP_001329871  hitchhiker  8.21144e-06  decreased coverage  5.78449e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0654  CDS  NC_009637  654989  655387  399  50S ribosomal protein L14P  YP_001329872  hitchhiker  1.02668e-05  decreased coverage  5.88406e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0655  CDS  NC_009637  655407  655766  360  50S ribosomal protein L24P  YP_001329873  hitchhiker  0.000112654  decreased coverage  6.23548e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0656  CDS  NC_009637  655778  656512  735  30S ribosomal protein S4e  YP_001329874  hitchhiker  0.0055669  decreased coverage  7.46935e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0657  CDS  NC_009637  656541  657086  546  50S ribosomal protein L5P  YP_001329875  normal  0.15981  decreased coverage  7.04942e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0658  CDS  NC_009637  657096  657257  162  30S ribosomal protein S14P  YP_001329876  normal  0.133045  decreased coverage  5.78449e-05  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0754  CDS  NC_009637  736135  736893  759  extracellular solute-binding protein  YP_001329972  decreased coverage  0.00633321  normal  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_0882  CDS  NC_009637  849035  849430  396  hypothetical protein  YP_001330100  normal  0.416854  decreased coverage  0.000222809  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1029  CDS  NC_009637  1005172  1005690  519  transcription regulator ArsR  YP_001330247  normal  0.140635  decreased coverage  0.00225669  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1468    NC_009637  1429683  1429979  297      decreased coverage  5.89837e-10  normal  0.0538497  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1514  CDS  NC_009637  1468686  1469096  411  hypothetical protein  YP_001330724  normal  0.303873  decreased coverage  1.4256e-06  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1515  CDS  NC_009637  1469454  1471100  1647  hypothetical protein  YP_001330725  normal  decreased coverage  3.86957e-06  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1663  CDS  NC_009637  1611067  1611255  189  50S ribosomal protein L24e  YP_001330872  decreased coverage  0.0076779  normal  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_1793  CDS  NC_009637  1756224  1757060  837  hypothetical protein  YP_001330998  decreased coverage  0.00382966  unclonable  7.01935e-09  Methanococcus maripaludis C7  Archaea 
 
 
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MmarC7_R0046  tRNA  NC_009637  1469295  1469379  85  tRNA-Ser    normal  0.481236  decreased coverage  1.43927e-06  Methanococcus maripaludis C7  Archaea 
 
 
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