111 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mpe_A0033  CDS  NC_008825  34230  34457  228  hypothetical protein  YP_001019230  decreased coverage  0.00113494  normal  0.0729977  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0034  CDS  NC_008825  34465  35067  603  hypothetical protein  YP_001019231  decreased coverage  0.00139041  normal  0.0848547  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0040  CDS  NC_008825  38997  40706  1710  paraquat-inducible protein  YP_001019237  decreased coverage  0.00684202  normal  0.214843  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0046  CDS  NC_008825  43653  44651  999  hypothetical protein  YP_001019243  decreased coverage  0.000145841  normal  0.271041  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0122  CDS  NC_008825  124475  125488  1014  thiosulfate binding protein  YP_001019319  normal  0.964738  decreased coverage  7.12106e-06  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0123  CDS  NC_008825  125660  126673  1014  thiosulfate binding protein  YP_001019320  normal  decreased coverage  4.42607e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0124  CDS  NC_008825  126710  127546  837  ABC type transporter  YP_001019321  normal  decreased coverage  3.83735e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0125  CDS  NC_008825  127548  128462  915  ABC type transporter  YP_001019322  normal  decreased coverage  3.64812e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0141  CDS  NC_008825  147877  148731  855  hypothetical protein  YP_001019338  decreased coverage  0.00104175  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0142  CDS  NC_008825  148715  149323  609  hypothetical protein  YP_001019339  decreased coverage  0.00249827  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0143  CDS  NC_008825  149320  150654  1335  membrane carboxypeptidase-like protein  YP_001019340  decreased coverage  0.00763873  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0272  CDS  NC_008825  294607  295956  1350  Sun protein  YP_001019469  normal  0.432064  decreased coverage  0.0030391  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0273  CDS  NC_008825  296000  296608  609  hypothetical protein  YP_001019470  normal  0.440817  decreased coverage  0.00233416  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0274  CDS  NC_008825  296634  298979  2346  multi-sensor signal transduction histidine kinase  YP_001019471  normal  0.276593  decreased coverage  0.00464659  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0308  CDS  NC_008825  334230  335336  1107  hypothetical protein  YP_001019505  normal  decreased coverage  0.00122162  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0309  CDS  NC_008825  335358  335681  324  putative ferredoxin  YP_001019506  normal  decreased coverage  0.000885612  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0310  CDS  NC_008825  335715  336341  627  hypothetical protein  YP_001019507  normal  0.910539  decreased coverage  0.00111956  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0311  CDS  NC_008825  336384  337538  1155  Serine-type D-Ala-D-Ala carboxypeptidase  YP_001019508  normal  0.692445  decreased coverage  0.00122162  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0597  CDS  NC_008825  627910  628698  789  short chain enoyl-CoA hydratase  YP_001019794  decreased coverage  0.00392493  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0774  CDS  NC_008825  808625  809125  501  hypothetical protein  YP_001019971  decreased coverage  0.00906515  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0787  CDS  NC_008825  822477  823292  816  hypothetical protein  YP_001019984  decreased coverage  3.99793e-05  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0788  CDS  NC_008825  823261  824361  1101  acyl-carrier-protein S-malonyltransferase-like protein  YP_001019985  decreased coverage  0.000126518  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0871  CDS  NC_008825  909995  910936  942  LysR family transcriptional regulator  YP_001020068  decreased coverage  0.00440392  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A0964  CDS  NC_008825  1023918  1025627  1710  hypothetical protein  YP_001020161  decreased coverage  0.00077396  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1088  CDS  NC_008825  1162893  1163657  765  hypothetical protein  YP_001020284  decreased coverage  0.00463321  normal  0.684623  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1134  CDS  NC_008825  1210678  1210905  228  hypothetical protein  YP_001020330  normal  decreased coverage  0.00450728  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1135  CDS  NC_008825  1210974  1211840  867  UDP-glucose pyrophosphorylase  YP_001020331  normal  decreased coverage  0.00581514  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1183  CDS  NC_008825  1269556  1271895  2340  hypothetical protein  YP_001020379  decreased coverage  0.00761899  normal  0.154404  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1242  CDS  NC_008825  1336974  1338074  1101  putative membrane-bound lytic murein transglycosylase B protein  YP_001020439  decreased coverage  0.00209703  normal  0.108974  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1261  CDS  NC_008825  1357698  1358849  1152  carbamoyl-phosphate synthase small subunit  YP_001020458  normal  decreased coverage  0.00672288  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1420  CDS  NC_008825  1529125  1530531  1407  putative oxidoreductase protein  YP_001020617  normal  decreased coverage  0.00835956  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1421  CDS  NC_008825  1530528  1530917  390  putative transmembrane protein  YP_001020618  normal  decreased coverage  0.00663896  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1422  CDS  NC_008825  1530895  1532145  1251  putative ribonuclease BN transmembrane protein  YP_001020619  normal  decreased coverage  0.00924301  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1441  CDS  NC_008825  1556033  1557220  1188  putative 1,4-butanediol diacrylate esterase  YP_001020638  decreased coverage  0.00263583  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1506  CDS  NC_008825  1621996  1622541  546  hypothetical protein  YP_001020703  decreased coverage  3.13141e-08  normal  0.357247  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1670  CDS  NC_008825  1793829  1794572  744  hypothetical protein  YP_001020867  decreased coverage  0.00378302  normal  0.544316  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1736  CDS  NC_008825  1861149  1863362  2214  TonB-dependent receptor protein  YP_001020931  decreased coverage  0.00567556  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1747  CDS  NC_008825  1873947  1874195  249  hypothetical protein  YP_001020941  decreased coverage  0.00455383  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1748  CDS  NC_008825  1874206  1874823  618  tRNA-adenosine deaminase  YP_001020942  decreased coverage  0.00208224  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1769  CDS  NC_008825  1901596  1903272  1677  long-chain-fatty-acid--CoA ligase  YP_001020963  normal  decreased coverage  0.00212051  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1770  CDS  NC_008825  1903299  1904546  1248  putative leu/Ile/val-binding precursor signal peptide protein  YP_001020964  normal  decreased coverage  0.00200774  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1805  CDS  NC_008825  1943048  1944226  1179  hypothetical protein  YP_001020999  decreased coverage  0.00695665  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1931  CDS  NC_008825  2069980  2070210  231  hypothetical protein  YP_001021124  normal  decreased coverage  0.00336306  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1932  CDS  NC_008825  2070404  2071279  876  NADPH:quinone reductase-related Zn-dependent oxidoreductase  YP_001021125  normal  decreased coverage  0.00401032  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1933  CDS  NC_008825  2071705  2071902  198  hypothetical protein  YP_001021126  normal  decreased coverage  0.00360026  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1934  CDS  NC_008825  2071926  2072846  921  hypothetical protein  YP_001021127  normal  decreased coverage  0.00452472  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1935  CDS  NC_008825  2072944  2073123  180  hypothetical protein  YP_001021128  normal  decreased coverage  0.00338616  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1936  CDS  NC_008825  2073125  2073451  327  hypothetical protein  YP_001021129  normal  decreased coverage  0.0034564  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1937  CDS  NC_008825  2073672  2074343  672  hypothetical protein  YP_001021130  normal  0.0915795  decreased coverage  0.0039045  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1938  CDS  NC_008825  2074345  2075424  1080  hypothetical protein  YP_001021131  decreased coverage  0.000532019  decreased coverage  0.00164201  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A1939  CDS  NC_008825  2075421  2075906  486  hypothetical protein  YP_001021132  decreased coverage  0.00420129  hitchhiker  0.00989938  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2319  CDS  NC_008825  2486606  2489395  2790  assimilatory nitrate reductase (NADH) alpha subunit apoprotein  YP_001021510  decreased coverage  0.00502256  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2381  CDS  NC_008825  2547058  2547807  750  hypothetical protein  YP_001021571  decreased coverage  0.00881734  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2544    NC_008825  2710403  2711446  1044      decreased coverage  0.00700416  normal  0.641899  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2546  CDS  NC_008825  2711495  2713528  2034  putative cox2 cytochrome oxidase subunit 2  YP_001021734  decreased coverage  0.00554628  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2548  CDS  NC_008825  2715294  2716871  1578  methyl-accepting chemotaxis protein  YP_001021736  decreased coverage  0.00975221  normal  0.500866  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2667  CDS  NC_008825  2841629  2842324  696  heme oxygenase family protein  YP_001021856  decreased coverage  0.00170539  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A2899  CDS  NC_008825  3085408  3086088  681  GntR family transcriptional regulator  YP_001022087  decreased coverage  4.58154e-05  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3001  CDS  NC_008825  3190949  3191776  828  uroporphyrinogen-III synthase  YP_001022189  decreased coverage  0.00619435  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3140  CDS  NC_008825  3340601  3341611  1011  putative ATPase  YP_001022328  normal  decreased coverage  0.000223512  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3141  CDS  NC_008825  3341664  3342560  897  5-nucleotidase, putative  YP_001022329  normal  decreased coverage  0.000206267  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3177  CDS  NC_008825  3377849  3378730  882  putative cytochrome C oxidase subunit III transmembrane protein  YP_001022365  decreased coverage  0.00203621  normal  0.584186  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3207  CDS  NC_008825  3409191  3410540  1350  putative biotin carboxylase protein  YP_001022395  normal  0.301064  decreased coverage  0.00428909  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3208  CDS  NC_008825  3410557  3411459  903  ribosomal protein L11 methyltransferase  YP_001022396  normal  0.0770215  decreased coverage  0.00369905  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3210  CDS  NC_008825  3412676  3413581  906  putative sugar kinase transferase protein  YP_001022398  normal  0.258809  decreased coverage  0.003878  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3211  CDS  NC_008825  3413652  3414089  438  hypothetical protein  YP_001022399  normal  0.0320954  decreased coverage  0.00338616  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3212  CDS  NC_008825  3414171  3414608  438  histone H1-like protein  YP_001022400  normal  0.0577747  decreased coverage  0.00325205  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3394  CDS  NC_008825  3609731  3610204  474  hypothetical protein  YP_001022582  normal  0.928771  decreased coverage  0.00867638  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3395  CDS  NC_008825  3610201  3611076  876  MxaJ protein  YP_001022583  normal  decreased coverage  0.00965407  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3403  CDS  NC_008825  3619592  3620041  450  fimbrial biogenesis protein  YP_001022591  normal  decreased coverage  0.00878868  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3431  CDS  NC_008825  3641990  3642544  555  50S ribosomal protein L5  YP_001022619  decreased coverage  0.00979614  normal  0.204364  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3443  CDS  NC_008825  3648372  3649115  744  50S ribosomal protein L3  YP_001022631  decreased coverage  0.000129848  normal  0.388921  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3444  CDS  NC_008825  3649239  3649550  312  30S ribosomal protein S10  YP_001022632  decreased coverage  1.8475e-05  normal  0.343621  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3615  CDS  NC_008825  3823853  3824695  843  nitric-oxide reductase NorQ protein  YP_001022803  decreased coverage  0.0071998  normal  0.061838  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3634  CDS  NC_008825  3843806  3844288  483  hypothetical protein  YP_001022822  decreased coverage  0.00176543  normal  0.24016  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3780  CDS  NC_008825  4000479  4001390  912  chromosome segregation DNA-binding protein  YP_001022968  normal  decreased coverage  0.000296744  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3781  CDS  NC_008825  4001446  4001991  546  hypothetical protein  YP_001022969  normal  decreased coverage  0.000225308  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3782  CDS  NC_008825  4002001  4002774  774  chromosome segregation ATPase  YP_001022970  normal  decreased coverage  0.000230675  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3783  CDS  NC_008825  4002778  4003197  420  hypothetical protein  YP_001022971  normal  0.873007  decreased coverage  0.000213032  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3784  CDS  NC_008825  4003197  4003436  240  hypothetical protein  YP_001022972  normal  0.640007  decreased coverage  0.000191951  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3785  CDS  NC_008825  4003530  4004165  636  lipocalin-like protein  YP_001022973  normal  0.317591  decreased coverage  0.000240027  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3786  CDS  NC_008825  4004125  4004790  666  16S rRNA methyltransferase GidB  YP_001022974  normal  0.393771  decreased coverage  0.000261644  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3787  CDS  NC_008825  4004787  4006790  2004  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA  YP_001022975  normal  decreased coverage  0.000431076  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3788  CDS  NC_008825  4006902  4007162  261  hypothetical protein  YP_001022976  normal  decreased coverage  0.000190416  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3789  CDS  NC_008825  4007176  4007400  225  hypothetical protein  YP_001022977  normal  decreased coverage  0.000180132  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3790  CDS  NC_008825  4007497  4008888  1392  Alpha,alpha-trehalose-phosphate synthase (UDP-forming)  YP_001022978  normal  decreased coverage  0.000285165  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_A3791  CDS  NC_008825  4008908  4010704  1797  hypothetical protein  YP_001022979  normal  decreased coverage  0.000380463  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0040  CDS  NC_008826  33459  33947  489  hypothetical protein  YP_001023056  normal  decreased coverage  1.58895e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0041    NC_008826  34012  34458  447      normal  decreased coverage  1.54317e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0118  CDS  NC_008826  106140  106712  573  hypothetical protein  YP_001023132  normal  decreased coverage  2.09966e-07  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0129  CDS  NC_008826  115472  116044  573  hypothetical protein  YP_001023143  decreased coverage  0.0017929  hitchhiker  4.35271e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0142  CDS  NC_008826  123526  124041  516  hypothetical protein  YP_001023155  decreased coverage  9.18158e-07  hitchhiker  0.00103611  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0174  CDS  NC_008826  150723  153062  2340  hypothetical protein  YP_001023187  decreased coverage  0.00791399  hitchhiker  0.00018824  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0261  CDS  NC_008826  217241  217747  507  hypothetical protein  YP_001023271  normal  decreased coverage  7.77005e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0353  CDS  NC_008826  304366  304725  360  hypothetical protein  YP_001023363  decreased coverage  0.00695064  normal  0.533653  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0383  CDS  NC_008826  337099  337509  411  hypothetical protein  YP_001023393  decreased coverage  0.007698  normal  0.968839  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0401  CDS  NC_008826  353956  356511  2556  DNA topoisomerase  YP_001023411  normal  0.0152197  decreased coverage  5.78583e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0406  CDS  NC_008826  361252  361716  465  hypothetical protein  YP_001023416  decreased coverage  7.53165e-08  hitchhiker  4.86569e-05  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0486  CDS  NC_008826  432667  433014  348  hypothetical protein  YP_001023493  decreased coverage  0.00104952  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
Mpe_B0490  CDS  NC_008826  438691  438963  273  hypothetical protein  YP_001023497  decreased coverage  0.000852193  normal  Methylibium petroleiphilum PM1  Bacteria 
 
 
-
 
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