58 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BMA10229_0039  CDS  NC_008835  35793  36056  264  hypothetical protein  YP_001023865  decreased coverage  1.5275e-13  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0071  CDS  NC_008835  59541  60875  1335  hypothetical protein  YP_001023897  decreased coverage  0.0046059  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0224  CDS  NC_008835  209407  210900  1494  putative glycolate oxidase, subunit GlcD  YP_001024049  decreased coverage  0.00834249  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0245  CDS  NC_008835  235138  235872  735  protocatechuate 3,4-dioxygenase, beta subunit  YP_001024070  decreased coverage  0.000128841  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0481  CDS  NC_008835  522971  523810  840  histidine ABC transporter, ATP-binding protein  YP_001024297  decreased coverage  0.00989858  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0598  CDS  NC_008835  637015  638166  1152  putative outer membrane porin  YP_001024414  decreased coverage  0.00212421  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0599  CDS  NC_008835  638211  638336  126  hypothetical protein  YP_001024415  decreased coverage  0.00165139  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_0675  CDS  NC_008835  709695  710069  375  hypothetical protein  YP_001024490  decreased coverage  0.00717845  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_1847  CDS  NC_008835  1893074  1894369  1296  putative EDTA monooxygenase  YP_001025644  decreased coverage  0.00146661  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_1921  CDS  NC_008835  1968998  1971418  2421  lectin repeat-containing protein  YP_001025718  decreased coverage  0.00570044  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_2164  CDS  NC_008835  2224504  2225529  1026  putative syringomycin synthesis regulator SyrP  YP_001025957  decreased coverage  1.19681e-06  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0063  CDS  NC_008836  59259  60599  1341  histidyl-tRNA synthetase  YP_001026072  decreased coverage  0.00160741  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0126  CDS  NC_008836  129357  130070  714  hypothetical protein  YP_001026134  decreased coverage  2.93987e-11  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0169  CDS  NC_008836  178604  179101  498  MarR family transcriptional regulator  YP_001026174  decreased coverage  0.00968003  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0180  CDS  NC_008836  194021  194923  903  LysR family transcriptional regulator  YP_001026185  decreased coverage  9.07778e-05  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0202  CDS  NC_008836  213039  214946  1908  threonyl-tRNA synthetase  YP_001026205  decreased coverage  0.00540019  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0208  CDS  NC_008836  220346  221251  906  LysR family transcriptional regulator  YP_001026210  decreased coverage  0.00341225  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0222  CDS  NC_008836  235754  236290  537  putative histidinol-phosphate aminotransferase  YP_001026224  decreased coverage  9.2452e-08  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0282  CDS  NC_008836  297403  299019  1617  cobyrinic acid a,c-diamide synthase  YP_001026284  decreased coverage  0.000230572  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0290  CDS  NC_008836  321781  322548  768  hypothetical protein  YP_001026292  decreased coverage  0.0025701  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0293  CDS  NC_008836  324820  326940  2121  iron-hydroxamate transporter permease subunit  YP_001026295  decreased coverage  0.00292434  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0317  CDS  NC_008836  348469  349668  1200  periplasmic multidrug efflux lipoprotein precursor  YP_001026319  decreased coverage  0.00333189  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0464  CDS  NC_008836  487613  488473  861  hypothetical protein  YP_001026462  decreased coverage  0.000209316  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0671  CDS  NC_008836  688129  688962  834  IS407A, transposase OrfB  YP_001026666  decreased coverage  0.00222254  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0689  CDS  NC_008836  710451  712163  1713  iron ABC transporter permease  YP_001026684  decreased coverage  0.000577033  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0697  CDS  NC_008836  717352  719313  1962  hypothetical protein  YP_001026692  decreased coverage  0.00183963  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A0707  CDS  NC_008836  728519  729673  1155  zinc carboxypeptidase family protein  YP_001026698  decreased coverage  0.000200577  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1044  CDS  NC_008836  1056887  1058269  1383  exodeoxyribonuclease VII large subunit  YP_001027030  decreased coverage  2.1456e-06  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1502  CDS  NC_008836  1536001  1536957  957  ribose-phosphate pyrophosphokinase  YP_001027485  decreased coverage  0.00100657  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1593  CDS  NC_008836  1633994  1634863  870  F0F1 ATP synthase subunit A  YP_001027573  decreased coverage  0.000136963  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1597  CDS  NC_008836  1637823  1638593  771  sporulation initiation inhibitor protein Soj  YP_001027577  decreased coverage  0.00287402  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1906  CDS  NC_008836  1938680  1939870  1191  elongation factor Tu  YP_001027878  decreased coverage  3.03162e-09  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1908  CDS  NC_008836  1940048  1940428  381  preprotein translocase subunit SecE  YP_001027879  decreased coverage  2.86812e-10  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1909  CDS  NC_008836  1940430  1940987  558  transcription antitermination protein NusG  YP_001027880  decreased coverage  8.47824e-10  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1910  CDS  NC_008836  1941133  1941564  432  50S ribosomal protein L11  YP_001027881  decreased coverage  5.1235e-11  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1911  CDS  NC_008836  1941565  1942263  699  50S ribosomal protein L1  YP_001027882  decreased coverage  2.99291e-09  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1924  CDS  NC_008836  1960931  1961590  660  50S ribosomal protein L3  YP_001027895  decreased coverage  1.32844e-12  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A1925  CDS  NC_008836  1961590  1962210  621  50S ribosomal protein L4  YP_001027896  decreased coverage  9.66469e-09  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2473  CDS  NC_008836  2513028  2513912  885  LysR family transcriptional regulator  YP_001028431  decreased coverage  0.00812964  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2493  CDS  NC_008836  2535121  2536341  1221  cyclopropane fatty acid synthase family protein  YP_001028451  decreased coverage  2.80606e-05  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2565  CDS  NC_008836  2610647  2611954  1308  putative amino acid ABC transporter, periplasmic amino acid-binding protein  YP_001028523  decreased coverage  0.000125255  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2651  tRNA  NC_008836  2687775  2687851  77  tRNA-Arg    decreased coverage  0.00638973  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2758  CDS  NC_008836  2788113  2789510  1398  polysaccharide ABC transporter, ATP-binding protein  YP_001028710  decreased coverage  0.00103163  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2759  CDS  NC_008836  2789507  2790745  1239  putative O-antigen acetylase  YP_001028711  decreased coverage  0.00608495  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2791  CDS  NC_008836  2818938  2822201  3264  ribonuclease E  YP_001028741  decreased coverage  0.000882056  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2952  CDS  NC_008836  2973497  2975170  1674  dihydroxy-acid dehydratase  YP_001028896  decreased coverage  0.0058068  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2975  CDS  NC_008836  2995507  2996346  840  pantoate--beta-alanine ligase  YP_001028919  decreased coverage  0.00455305  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A2984  CDS  NC_008836  3009400  3010047  648  ompA family protein  YP_001028928  decreased coverage  0.00790258  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3014  CDS  NC_008836  3045794  3046882  1089  putative outer membrane porin  YP_001028958  decreased coverage  1.44829e-05  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3062  CDS  NC_008836  3088982  3089974  993  hypothetical protein  YP_001029004  decreased coverage  0.0002291  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3091  CDS  NC_008836  3126207  3127796  1590  dihydrolipoamide acetyltransferase  YP_001029032  decreased coverage  0.000396529  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3098  CDS  NC_008836  3136769  3137491  723  hypothetical protein  YP_001029039  decreased coverage  0.00812964  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3205  CDS  NC_008836  3253247  3254287  1041  ABC transporter, permease protein  YP_001029145  decreased coverage  0.000674085  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3272  CDS  NC_008836  3325060  3325875  816  hypothetical protein  YP_001029208  decreased coverage  3.89309e-12  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3287  CDS  NC_008836  3340294  3341754  1461  inosine 5'-monophosphate dehydrogenase  YP_001029223  decreased coverage  0.00821787  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3310  CDS  NC_008836  3361949  3362380  432  large-conductance mechanosensitive channel  YP_001029246  decreased coverage  0.00104042  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3324  CDS  NC_008836  3379188  3380525  1338  sensor histidine kinase RisS  YP_001029260  decreased coverage  7.98172e-07  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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BMA10229_A3349  CDS  NC_008836  3400747  3402018  1272  ATP-dependent protease ATP-binding subunit ClpX  YP_001029283  decreased coverage  0.00739015  n/a    Burkholderia mallei NCTC 10229  Bacteria 
 
 
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