22 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Pcal_0093  CDS  NC_009073  93630  94565  936  hypothetical protein  YP_001054998  n/a    decreased coverage  4.28603e-07  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_0094  CDS  NC_009073  94691  95044  354  hypothetical protein  YP_001054999  n/a    decreased coverage  2.87436e-07  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_0095  CDS  NC_009073  95095  95622  528  hypothetical protein  YP_001055000  n/a    decreased coverage  3.6184e-07  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1033  CDS  NC_009073  969421  969891  471  50S ribosomal protein L15P  YP_001055924  n/a    decreased coverage  2.37076e-06  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1034  CDS  NC_009073  969891  971258  1368  preprotein translocase subunit SecY  YP_001055925  n/a    decreased coverage  3.91627e-06  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1036  CDS  NC_009073  971426  972247  822  hypothetical protein  YP_001055927  n/a    decreased coverage  2.6876e-06  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1286  CDS  NC_009073  1199326  1200375  1050  CRISPR-associated RAMP Cmr1 family protein  YP_001056176  n/a    decreased coverage  0.00110852  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1287  CDS  NC_009073  1200366  1201070  705  CRISPR-associated RAMP Cmr6 family protein  YP_001056177  n/a    decreased coverage  0.00222199  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1418  CDS  NC_009073  1327885  1329744  1860  hypothetical protein  YP_001056304  n/a    decreased coverage  0.00970079  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1671  CDS  NC_009073  1558899  1560044  1146  major facilitator transporter  YP_001056554  n/a    decreased coverage  9.14056e-05  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1672  CDS  NC_009073  1560041  1560796  756  hypothetical protein  YP_001056555  n/a    decreased coverage  7.20356e-05  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1673  CDS  NC_009073  1560826  1562469  1644  AMP-dependent synthetase and ligase  YP_001056556  n/a    decreased coverage  0.000119129  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1775  CDS  NC_009073  1645915  1647216  1302  extracellular ligand-binding receptor  YP_001056658  n/a    decreased coverage  6.02209e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1776  CDS  NC_009073  1647705  1648160  456  aspartate carbamoyltransferase regulatory subunit  YP_001056659  n/a    decreased coverage  3.34817e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1777  CDS  NC_009073  1648157  1648735  579  orotate phosphoribosyltransferase  YP_001056660  n/a    decreased coverage  3.86496e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1778  CDS  NC_009073  1648723  1649607  885  dihydroorotate dehydrogenase  YP_001056661  n/a    decreased coverage  5.36627e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1779  CDS  NC_009073  1649585  1650073  489  hypothetical protein  YP_001056662  n/a    decreased coverage  3.47212e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1780  CDS  NC_009073  1650067  1651917  1851  hypothetical protein  YP_001056663  n/a    decreased coverage  8.13258e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_1781  CDS  NC_009073  1651934  1652761  828  endonuclease IV  YP_001056664  n/a    decreased coverage  3.69589e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_2030  CDS  NC_009073  1884015  1884731  717  nuclease  YP_001056911  n/a    decreased coverage  3.91548e-10  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_R0019  tRNA  NC_009073  1647368  1647452  85  tRNA-Leu    n/a    decreased coverage  2.6789e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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Pcal_R0020  tRNA  NC_009073  1647546  1647639  94  tRNA-Gly    n/a    decreased coverage  2.77692e-08  Pyrobaculum calidifontis JCM 11548  Archaea 
 
 
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