63 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Mlab_0065  CDS  NC_008942  64657  66921  2265  hypothetical protein  YP_001029510  unclonable  2.75591e-09  decreased coverage  2.2772e-06  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0149  CDS  NC_008942  135850  136077  228  hypothetical protein  YP_001029593  decreased coverage  0.00289239  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0195  CDS  NC_008942  182859  184034  1176  hypothetical protein  YP_001029638  decreased coverage  1.46938e-07  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0346  CDS  NC_008942  327087  327947  861  hypothetical protein  YP_001029789  decreased coverage  7.81127e-06  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0392  CDS  NC_008942  369818  370747  930  hypothetical protein  YP_001029835  decreased coverage  9.41975e-05  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0411  CDS  NC_008942  388534  389142  609  imidazole glycerol phosphate synthase subunit HisH  YP_001029854  decreased coverage  0.000837063  decreased coverage  0.000107081  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0412  CDS  NC_008942  389402  391357  1956  DNA gyrase subunit B  YP_001029855  decreased coverage  0.000264952  decreased coverage  0.0001901  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0413  CDS  NC_008942  391347  393821  2475  DNA gyrase subunit A  YP_001029856  normal  0.0903108  decreased coverage  0.000217687  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0571  CDS  NC_008942  540213  540692  480  hypothetical protein  YP_001030012  normal  0.111186  decreased coverage  0.000343935  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0572  CDS  NC_008942  540689  541774  1086  ribosomal-protein-alanine acetyltransferase  YP_001030013  normal  0.591606  decreased coverage  0.000177209  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0573  CDS  NC_008942  541776  542372  597  hypothetical protein  YP_001030014  normal  0.575358  decreased coverage  0.000394368  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0574  CDS  NC_008942  542373  544073  1701  formylmethanofuran dehydrogenase, subunit A  YP_001030015  normal  0.509676  decreased coverage  0.000667669  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0575  CDS  NC_008942  544070  544840  771  formylmethanofuran dehydrogenase, subunit C  YP_001030016  hitchhiker  0.00575915  decreased coverage  0.000443842  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0576  CDS  NC_008942  544965  546443  1479  argininosuccinate lyase  YP_001030017  decreased coverage  5.12851e-08  decreased coverage  0.000219195  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0577  CDS  NC_008942  546440  547675  1236  glutamyl-tRNA(Gln) amidotransferase subunit D  YP_001030018  hitchhiker  1.0795e-06  decreased coverage  0.000463482  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0578  CDS  NC_008942  547675  549504  1830  glutamyl-tRNA(Gln) amidotransferase subunit E  YP_001030019  hitchhiker  0.00145771  decreased coverage  0.000600934  Methanocorpusculum labreanum Z  Archaea 
 
 
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Mlab_0583  CDS  NC_008942  555538  556107  570  hypothetical protein  YP_001030024  normal  0.113671  decreased coverage  0.000275721  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0584  CDS  NC_008942  556202  557365  1164  hypothetical protein  YP_001030025  normal  0.183239  decreased coverage  0.000387048  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0585  CDS  NC_008942  557499  557996  498  hypothetical protein  YP_001030026  normal  0.0400292  decreased coverage  0.000284445  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0586  CDS  NC_008942  558273  558650  378  hypothetical protein  YP_001030027  normal  0.101078  decreased coverage  0.000251226  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0694  CDS  NC_008942  668494  668748  255  hypothetical protein  YP_001030133  decreased coverage  1.81968e-05  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0695  CDS  NC_008942  668745  669272  528  hypothetical protein  YP_001030134  decreased coverage  4.12678e-05  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0775  CDS  NC_008942  756359  757204  846  hypothetical protein  YP_001030213  decreased coverage  1.10897e-09  hitchhiker  4.84536e-12  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0785  CDS  NC_008942  767272  768648  1377  alpha-phosphoglucomutase / phosphomannomutase  YP_001030223  decreased coverage  0.00879985  unclonable  2.13638e-13  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0786  CDS  NC_008942  768722  769327  606  hypothetical protein  YP_001030224  decreased coverage  0.00417642  unclonable  8.81752e-14  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0787  CDS  NC_008942  769505  770467  963  formylmethanofuran dehydrogenase subunit E-like protein  YP_001030225  decreased coverage  0.00453269  unclonable  1.00471e-13  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0841  CDS  NC_008942  819744  821570  1827  hypothetical protein  YP_001030279  decreased coverage  0.0027333  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0876  CDS  NC_008942  865214  865648  435  hypothetical protein  YP_001030314  decreased coverage  1.00827e-10  hitchhiker  3.42006e-05  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0892  CDS  NC_008942  880589  880873  285  hypothetical protein  YP_001030330  hitchhiker  1.1736e-08  decreased coverage  5.1377e-12  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_0957  CDS  NC_008942  950765  951196  432  membrane bound hydrogenase subunit mbhJ  YP_001030394  decreased coverage  0.0013552  normal  0.515096  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1026  CDS  NC_008942  1035466  1036014  549  hypothetical protein  YP_001030462  decreased coverage  0.00950399  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1218  CDS  NC_008942  1249183  1249434  252  hypothetical protein  YP_001030654  decreased coverage  4.45422e-10  normal  0.214233  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1246  CDS  NC_008942  1272736  1273281  546  30S ribosomal protein S4P  YP_001030682  decreased coverage  7.03727e-05  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1247  CDS  NC_008942  1273296  1273748  453  30S ribosomal protein S13P  YP_001030683  decreased coverage  0.000201962  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1330  CDS  NC_008942  1359556  1359894  339  hypothetical protein  YP_001030764  decreased coverage  0.00131523  normal  0.412786  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1355  CDS  NC_008942  1376213  1377490  1278  dihydrolipoamide dehydrogenase  YP_001030789  normal  0.297533  decreased coverage  6.05303e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1359  CDS  NC_008942  1380258  1381094  837  hypothetical protein  YP_001030793  hitchhiker  2.16686e-06  decreased coverage  4.15932e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1360  CDS  NC_008942  1382229  1382477  249  hypothetical protein  YP_001030794  hitchhiker  4.12068e-09  decreased coverage  3.06061e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1361  CDS  NC_008942  1382474  1382785  312  hypothetical protein  YP_001030795  hitchhiker  3.31592e-11  decreased coverage  3.14529e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1362  CDS  NC_008942  1382883  1383233  351  hypothetical protein  YP_001030796  unclonable  1.43479e-12  decreased coverage  3.11622e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1375  CDS  NC_008942  1397022  1400738  3717  MoxR-like ATPases-like  YP_001030808  decreased coverage  0.00027114  hitchhiker  0.0024969  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1376  CDS  NC_008942  1400741  1401391  651  hypothetical protein  YP_001030809  decreased coverage  2.17169e-08  hitchhiker  0.00563986  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1395  CDS  NC_008942  1424960  1425538  579  PfkB  YP_001030828  decreased coverage  2.5436e-10  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1474  CDS  NC_008942  1512129  1513469  1341  signal recognition particle protein Srp54  YP_001030906  normal  0.570422  decreased coverage  0.000118802  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1475  CDS  NC_008942  1513471  1514484  1014  signal recognition particle-docking protein FtsY  YP_001030907  normal  0.487639  decreased coverage  3.61421e-05  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1476  CDS  NC_008942  1514574  1516613  2040  hypothetical protein  YP_001030908  hitchhiker  0.00481872  decreased coverage  0.000172669  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1529  CDS  NC_008942  1561599  1562327  729  hypothetical protein  YP_001030960  decreased coverage  1.08709e-09  normal  0.0452757  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1531  CDS  NC_008942  1563044  1563697  654  hypothetical protein  YP_001030962  decreased coverage  2.00843e-09  normal  0.0294417  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1539  CDS  NC_008942  1573746  1574171  426  hypothetical protein  YP_001030970  decreased coverage  2.00843e-09  hitchhiker  0.000167078  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1540  CDS  NC_008942  1574168  1574971  804  hypothetical protein  YP_001030971  decreased coverage  5.78843e-07  hitchhiker  2.2178e-05  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1548  CDS  NC_008942  1583219  1584079  861  hypothetical protein  YP_001030979  normal  0.626494  decreased coverage  7.86067e-06  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1549  CDS  NC_008942  1584082  1584456  375  GntR family transcriptional regulator  YP_001030980  normal  0.478849  decreased coverage  5.8181e-06  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1550  CDS  NC_008942  1584853  1585170  318  translation initiation factor IF-1A  YP_001030981  normal  0.812328  decreased coverage  4.82872e-06  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1551  CDS  NC_008942  1585184  1585645  462  phage integrase family protein  YP_001030982  normal  0.567371  decreased coverage  5.68825e-06  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1552  CDS  NC_008942  1585642  1587792  2151  hypothetical protein  YP_001030983  normal  0.937373  decreased coverage  1.46209e-05  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1585    NC_008942  1615717  1616748  1032      decreased coverage  1.45158e-09  hitchhiker  0.00670634  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1586  CDS  NC_008942  1617030  1618361  1332  hypothetical protein  YP_001031016  decreased coverage  5.07896e-08  hitchhiker  0.00416523  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1660  CDS  NC_008942  1694222  1694827  606  hypothetical protein  YP_001031088  decreased coverage  0.000145701  hitchhiker  5.65897e-11  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1714  CDS  NC_008942  1751238  1751921  684  ATPase  YP_001031142  decreased coverage  0.000845008  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_1730  CDS  NC_008942  1776739  1777170  432  hypothetical protein  YP_001031158  decreased coverage  3.42727e-05  normal  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_R0049  tRNA  NC_008942  1381777  1381849  73  tRNA-Asp    hitchhiker  2.27273e-08  decreased coverage  2.61131e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_R0050  tRNA  NC_008942  1381895  1381967  73  tRNA-Asp    hitchhiker  2.10067e-08  decreased coverage  2.56467e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
-
 
Mlab_R0051  tRNA  NC_008942  1381987  1382097  111  tRNA-OTHER    hitchhiker  2.31354e-08  decreased coverage  2.61131e-09  Methanocorpusculum labreanum Z  Archaea 
 
 
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