253 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sbal223_0067  CDS  NC_011663  78918  81314  2397  outer membrane insertion C-terminal signal  YP_002356034  decreased coverage  0.00013463  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0241  CDS  NC_011663  281253  281765  513  hypothetical protein  YP_002356201  normal  decreased coverage  1.09722e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0251  CDS  NC_011663  287802  288305  504  hypothetical protein  YP_002356211  normal  decreased coverage  1.41062e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0252  CDS  NC_011663  288473  289993  1521  Aldehyde Dehydrogenase  YP_002356212  normal  decreased coverage  5.71584e-06  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0253  CDS  NC_011663  290375  292333  1959  GAF modulated sigma54 specific transcriptional regulator, Fis family  YP_002356213  normal  decreased coverage  2.33378e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0254  CDS  NC_011663  292684  293664  981  quinone oxidoreductase, YhdH/YhfP family  YP_002356214  normal  decreased coverage  1.17637e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0255  CDS  NC_011663  293761  295137  1377  histidine kinase  YP_002356215  normal  0.126812  decreased coverage  1.37847e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0256  CDS  NC_011663  295125  295811  687  two component transcriptional regulator, winged helix family  YP_002356216  decreased coverage  2.72342e-07  decreased coverage  1.06333e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0257  CDS  NC_011663  296192  296716  525  protein of unknown function Spy-related  YP_002356217  decreased coverage  6.63543e-06  decreased coverage  1.15808e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0258  CDS  NC_011663  296768  297658  891  cation diffusion facilitator family transporter  YP_002356218  normal  0.0238617  decreased coverage  1.37847e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0304  CDS  NC_011663  346460  346711  252  hypothetical protein  YP_002356263  decreased coverage  0.000261079  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0356  CDS  NC_011663  397433  398512  1080  histidine kinase  YP_002356314  normal  0.143013  decreased coverage  1.13905e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0357  CDS  NC_011663  398645  399349  705  TPR domain-containing protein  YP_002356315  hitchhiker  0.000167049  decreased coverage  9.09482e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0358  CDS  NC_011663  399564  400508  945  Na+/Ca+ antiporter, CaCA family  YP_002356316  decreased coverage  5.61801e-08  decreased coverage  7.52949e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0359  CDS  NC_011663  400688  402352  1665  AMP-dependent synthetase and ligase  YP_002356317  hitchhiker  0.00409412  decreased coverage  1.00216e-10  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0360  CDS  NC_011663  402580  402963  384  endoribonuclease L-PSP  YP_002356318  normal  decreased coverage  6.17851e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0361  CDS  NC_011663  402989  405094  2106  bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase  YP_002356319  normal  decreased coverage  1.9359e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0362  CDS  NC_011663  405140  405418  279  DNA-directed RNA polymerase subunit omega  YP_002356320  normal  decreased coverage  5.90702e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0372  CDS  NC_011663  419079  419759  681  nucleotidase  YP_002356330  decreased coverage  0.000751956  hitchhiker  2.83623e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0402  CDS  NC_011663  448520  449197  678  DNA repair protein RadC  YP_002356359  decreased coverage  1.30829e-07  hitchhiker  1.66485e-10  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0490  CDS  NC_011663  559691  559903  213  hypothetical protein  YP_002356447  decreased coverage  9.00641e-06  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0491  CDS  NC_011663  560317  561075  759  uridine phosphorylase  YP_002356448  decreased coverage  9.89651e-05  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0492  CDS  NC_011663  561178  561930  753  nucleoside-specific channel-forming protein Tsx  YP_002356449  decreased coverage  0.000160917  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0493  CDS  NC_011663  562405  562875  471  protein of unknown function DUF107  YP_002356450  decreased coverage  3.58021e-07  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0514  CDS  NC_011663  586082  586699  618  MSHA pilin protein MshB  YP_002356471  decreased coverage  0.00061527  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0515  CDS  NC_011663  586753  587259  507  methylation site containing protein  YP_002356472  decreased coverage  0.000372661  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0522  CDS  NC_011663  595299  596348  1050  rod shape-determining protein MreB  YP_002356479  decreased coverage  8.45532e-07  normal  0.369074  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0586  CDS  NC_011663  674069  675436  1368  major facilitator superfamily MFS_1  YP_002356543  decreased coverage  3.0167e-06  normal  0.83373  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0736  CDS  NC_011663  873692  875890  2199  Dipeptidyl-peptidase 7. Serine peptidase. MEROPS family S46  YP_002356678  decreased coverage  0.00943685  hitchhiker  3.53181e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0738  CDS  NC_011663  877526  878602  1077  alanine racemase  YP_002356680  normal  0.0231981  decreased coverage  8.14721e-11  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0760  CDS  NC_011663  891454  891807  354  hypothetical protein  YP_002356702  decreased coverage  2.16456e-07  normal  0.0644633  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0814  CDS  NC_011663  940722  941786  1065  porin Gram-negative type  YP_002356755  decreased coverage  4.9607e-08  unclonable  3.54557e-12  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0834  CDS  NC_011663  966222  966953  732  16S ribosomal RNA methyltransferase RsmE  YP_002356775  decreased coverage  3.60607e-06  hitchhiker  2.21121e-06  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_0871  CDS  NC_011663  1023169  1024083  915  Glutamate--tRNA ligase  YP_002356812  decreased coverage  3.93825e-08  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1042  CDS  NC_011663  1226456  1228375  1920  molecular chaperone DnaK  YP_002356980  decreased coverage  7.11231e-06  decreased coverage  9.16606e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1043  CDS  NC_011663  1228486  1229619  1134  chaperone protein DnaJ  YP_002356981  hitchhiker  0.0054277  decreased coverage  5.10426e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1044  CDS  NC_011663  1230386  1231150  765  hypothetical protein  YP_002356982  hitchhiker  0.00657389  decreased coverage  3.4868e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1045  CDS  NC_011663  1231542  1231820  279  hypothetical protein  YP_002356983  normal  0.0110902  decreased coverage  2.98076e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1046  CDS  NC_011663  1232424  1233755  1332  DEAD/DEAH box helicase domain protein  YP_002356984  normal  0.0103787  decreased coverage  6.02754e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1089  CDS  NC_011663  1283685  1284518  834  rare lipoprotein A  YP_002357027  decreased coverage  4.93551e-07  hitchhiker  7.47193e-06  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1124  CDS  NC_011663  1322008  1322790  783  triosephosphate isomerase  YP_002357062  decreased coverage  1.21721e-05  unclonable  5.28037e-12  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1201  CDS  NC_011663  1417223  1418332  1110  efflux transporter, RND family, MFP subunit  YP_002357137  decreased coverage  1.18856e-07  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1215  CDS  NC_011663  1432596  1433000  405  transcription antitermination protein NusB  YP_002357151  decreased coverage  4.78736e-09  normal  0.242008  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1251  CDS  NC_011663  1479002  1480258  1257  aspartate kinase  YP_002357184  decreased coverage  2.31974e-05  hitchhiker  1.12827e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1258  CDS  NC_011663  1487944  1489056  1113  permease YjgP/YjgQ family protein  YP_002357191  decreased coverage  1.6572e-06  hitchhiker  0.000115983  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1322  CDS  NC_011663  1556172  1556723  552  cytochrome B561  YP_002357253  decreased coverage  0.00114864  normal  0.0249294  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1324  CDS  NC_011663  1557392  1557670  279  hypothetical protein  YP_002357255  decreased coverage  0.000513126  normal  0.0116062  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1325  CDS  NC_011663  1557673  1558764  1092  A/G-specific adenine glycosylase  YP_002357256  decreased coverage  0.00655288  hitchhiker  0.00812067  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1331  CDS  NC_011663  1564042  1565892  1851  protein of unknown function DUF885  YP_002357262  decreased coverage  4.81618e-06  hitchhiker  0.000370472  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1332  CDS  NC_011663  1566045  1567211  1167  oxygen-independent coproporphyrinogen III oxidase  YP_002357263  decreased coverage  5.75717e-05  hitchhiker  9.04617e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1445  CDS  NC_011663  1688635  1689015  381  flagellar motor switch protein  YP_002357375  decreased coverage  0.0098879  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1446  CDS  NC_011663  1689045  1689473  429  flagellar biosynthesis protein FliO  YP_002357376  decreased coverage  0.00843701  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1485  CDS  NC_011663  1732411  1732959  549  sugar transferase  YP_002357415  decreased coverage  0.00302801  normal  0.381864  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1498  CDS  NC_011663  1747102  1747809  708  lipoprotein, putative  YP_002357426  decreased coverage  1.76994e-07  normal  0.35232  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1499  CDS  NC_011663  1747941  1748231  291  hypothetical protein  YP_002357427  decreased coverage  2.30686e-08  normal  0.622983  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1510  CDS  NC_011663  1760302  1760694  393  histone family protein nucleoid-structuring protein H-NS  YP_002357438  decreased coverage  0.000161891  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1571  CDS  NC_011663  1837988  1838320  333  preprotein translocase subunit YajC  YP_002357499  decreased coverage  2.98712e-08  hitchhiker  6.23922e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1587  CDS  NC_011663  1854837  1856153  1317  aromatic hydrocarbon degradation membrane protein  YP_002357515  decreased coverage  3.18349e-07  unclonable  4.30527e-12  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1599  CDS  NC_011663  1870922  1871122  201  hypothetical protein  YP_002357527  decreased coverage  0.00429236  hitchhiker  0.000564563  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1612  CDS  NC_011663  1886679  1888805  2127  tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC  YP_002357540  decreased coverage  8.12918e-06  normal  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1649  CDS  NC_011663  1927872  1928684  813  exonuclease III  YP_002357577  decreased coverage  2.02985e-08  hitchhiker  6.56111e-11  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1702  CDS  NC_011663  1994518  1995297  780  putative sulfate transport protein CysZ  YP_002357630  decreased coverage  0.000296404  hitchhiker  5.28176e-07  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1704  CDS  NC_011663  1998959  2000065  1107  cell division protein ZipA  YP_002357632  unclonable  8.75421e-09  decreased coverage  1.08391e-10  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1705  CDS  NC_011663  2000169  2002226  2058  DNA ligase, NAD-dependent  YP_002357633  hitchhiker  0.000114947  decreased coverage  2.04337e-10  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1717  CDS  NC_011663  2014670  2015218  549  D,D-heptose 1,7-bisphosphate phosphatase  YP_002357645  decreased coverage  9.57588e-09  hitchhiker  3.35941e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1786  CDS  NC_011663  2104574  2105287  714  peptidase E  YP_002357714  decreased coverage  1.61108e-08  hitchhiker  7.38049e-11  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1788  CDS  NC_011663  2106667  2107602  936  chromosome replication initiation inhibitor protein  YP_002357716  decreased coverage  4.05332e-08  unclonable  3.92786e-12  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1792  CDS  NC_011663  2109786  2110670  885  dihydrodipicolinate synthase  YP_002357720  decreased coverage  3.68333e-08  hitchhiker  1.44356e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1803  CDS  NC_011663  2124894  2125724  831  NAD synthetase  YP_002357731  decreased coverage  0.00266158  hitchhiker  3.11933e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1815  CDS  NC_011663  2140468  2142255  1788  sulfatase  YP_002357743  decreased coverage  0.000588334  normal  0.040327  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1831  CDS  NC_011663  2161654  2162940  1287  type II citrate synthase  YP_002357759  decreased coverage  1.79965e-06  normal  0.249033  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1842  CDS  NC_011663  2174508  2174939  432  ferric uptake regulator  YP_002357770  decreased coverage  2.55764e-09  normal  0.0169118  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1855  CDS  NC_011663  2189095  2191737  2643  DNA topoisomerase I  YP_002357783  normal  decreased coverage  4.97797e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1856  CDS  NC_011663  2191964  2192743  780  hypothetical protein  YP_002357784  normal  0.0849639  decreased coverage  1.66193e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1857  CDS  NC_011663  2192972  2193955  984  transcriptional regulator CysB  YP_002357785  hitchhiker  0.00369362  decreased coverage  2.17707e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1858  CDS  NC_011663  2194194  2194856  663  two component transcriptional regulator, LuxR family  YP_002357786  decreased coverage  0.00870294  decreased coverage  1.66193e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1859  CDS  NC_011663  2195076  2195540  465  thioesterase superfamily protein  YP_002357787  normal  0.0277741  decreased coverage  1.32431e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1872  CDS  NC_011663  2213599  2214216  618  hypothetical protein  YP_002357800  decreased coverage  3.37406e-05  hitchhiker  9.47972e-06  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1873  CDS  NC_011663  2214220  2215338  1119  tRNA-specific 2-thiouridylase MnmA  YP_002357801  decreased coverage  0.000192838  hitchhiker  1.14036e-05  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1887  CDS  NC_011663  2229725  2230840  1116  Mrp protein  YP_002357815  decreased coverage  1.79965e-06  normal  0.0176835  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1888  CDS  NC_011663  2230852  2231490  639  uridine kinase  YP_002357816  decreased coverage  1.27737e-06  normal  0.0259304  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1900  CDS  NC_011663  2243462  2244094  633  Paraquat-inducible protein A  YP_002357828  decreased coverage  0.00104452  normal  0.195982  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1908  CDS  NC_011663  2253351  2254715  1365  protein of unknown function DUF1329  YP_002357836  decreased coverage  3.28398e-05  normal  0.130945  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1925  CDS  NC_011663  2275427  2276614  1188  aromatic amino acid transporter  YP_002357853  decreased coverage  0.00166231  normal  0.036415  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1935  CDS  NC_011663  2288339  2290327  1989  TonB-dependent receptor  YP_002357863  decreased coverage  0.00717608  normal  0.914131  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1941  CDS  NC_011663  2296342  2297184  843  S-formylglutathione hydrolase  YP_002357869  decreased coverage  0.00373445  normal  0.789535  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1951  CDS  NC_011663  2308993  2309994  1002  hypothetical protein  YP_002357878  decreased coverage  7.71271e-08  normal  0.269497  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1952  CDS  NC_011663  2309994  2313482  3489  transcription-repair coupling factor  YP_002357879  decreased coverage  0.00516748  normal  0.328047  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1954  CDS  NC_011663  2314334  2315566  1233  lipoprotein releasing system, transmembrane protein, LolC/E family  YP_002357881  decreased coverage  0.00124198  normal  0.0910172  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1959  CDS  NC_011663  2319738  2320559  822  serine O-acetyltransferase  YP_002357886  decreased coverage  1.37808e-05  hitchhiker  0.00459897  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1981  CDS  NC_011663  2341823  2342827  1005  hypothetical protein  YP_002357908  decreased coverage  8.99017e-08  hitchhiker  9.57074e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1982  CDS  NC_011663  2343164  2343631  468  hypothetical protein  YP_002357909  decreased coverage  6.14508e-09  hitchhiker  1.01296e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1987  CDS  NC_011663  2347403  2348020  618  Carbonate dehydratase  YP_002357914  decreased coverage  1.42238e-08  hitchhiker  1.00823e-09  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_1988  CDS  NC_011663  2348319  2348756  438  hypothetical protein  YP_002357915  decreased coverage  8.1199e-09  hitchhiker  7.73885e-10  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2010  CDS  NC_011663  2371771  2374347  2577  Glucan 1,4-alpha-glucosidase  YP_002357937  decreased coverage  0.00769756  hitchhiker  0.000340276  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2011  CDS  NC_011663  2374606  2376261  1656  major facilitator superfamily MFS_1  YP_002357938  decreased coverage  0.000990966  hitchhiker  0.000202625  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2018  CDS  NC_011663  2383816  2384631  816  hypothetical protein  YP_002357945  decreased coverage  0.00140757  hitchhiker  0.00602396  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2043  CDS  NC_011663  2415491  2416108  618  Holliday junction DNA helicase RuvA  YP_002357970  decreased coverage  2.36908e-05  hitchhiker  6.23922e-08  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2051  CDS  NC_011663  2425043  2426890  1848  signal peptide peptidase SppA, 67K type  YP_002357978  decreased coverage  0.00884416  hitchhiker  8.73335e-11  Shewanella baltica OS223  Bacteria 
 
 
-
 
Sbal223_2058  CDS  NC_011663  2435633  2438383  2751  DNA gyrase, A subunit  YP_002357985  decreased coverage  0.000369381  unclonable  6.93229e-12  Shewanella baltica OS223  Bacteria 
 
 
-
 
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