49 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Bcenmc03_0214  CDS  NC_010508  235882  236943  -  1062  RelA/SpoT domain-containing protein  YP_001763516  decreased coverage  0.000343543  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0291  CDS  NC_010508  320041  320874  -  834  OmpW family protein  YP_001763593  decreased coverage  0.00000000251819  unclonable  0.0000000000417391  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0328  CDS  NC_010508  374432  375052  +  621  50S ribosomal protein L4  YP_001763630  decreased coverage  0.0000000930223  normal  0.0206029  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0329  CDS  NC_010508  375049  375363  +  315  50S ribosomal protein L23  YP_001763631  decreased coverage  0.000000104942  normal  0.0187974  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0425  CDS  NC_010508  459267  460361  +  1095  hypothetical protein  YP_001763727  decreased coverage  0.000185465  hitchhiker  0.000000167131  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0427  CDS  NC_010508  460790  461467  +  678  hypothetical protein  YP_001763729  decreased coverage  0.00124672  hitchhiker  0.0000000171383  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0516  CDS  NC_010508  560371  561147  +  777  enoyl-CoA hydratase  YP_001763816  decreased coverage  0.000000000195576  normal  0.432666  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0535  CDS  NC_010508  590067  591263  +  1197  cell division protein FtsZ  YP_001763835  decreased coverage  0.00000000909703  normal  0.779082  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0567  CDS  NC_010508  624355  625002  +  648  hypothetical protein  YP_001763867  normal  0.506659  decreased coverage  0.0000676045  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0568  CDS  NC_010508  625230  625703  -  474  17 kDa surface antigen  YP_001763868  normal  0.533396  decreased coverage  0.000059328  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0569  CDS  NC_010508  625723  626661  -  939  ribokinase-like domain-containing protein  YP_001763869  normal  0.561391  decreased coverage  0.0000690864  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0573  CDS  NC_010508  629656  631023  -  1368  acetyl-CoA carboxylase biotin carboxylase subunit  YP_001763873  normal  1  decreased coverage  0.000078063  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0574  CDS  NC_010508  631111  631584  -  474  acetyl-CoA carboxylase biotin carboxyl carrier protein subunit  YP_001763874  normal  1  decreased coverage  0.0000488035  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0575  CDS  NC_010508  631651  632103  -  453  3-dehydroquinate dehydratase  YP_001763875  normal  1  decreased coverage  0.0000460325  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0576  CDS  NC_010508  632298  632849  -  552  redoxin domain-containing protein  YP_001763876  normal  1  decreased coverage  0.0000460325  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0577  CDS  NC_010508  632857  633501  -  645  hypothetical protein  YP_001763877  normal  1  decreased coverage  0.0000406376  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_0829  CDS  NC_010508  923057  923569  +  513  hypothetical protein  YP_001764129  decreased coverage  0.0000209543  hitchhiker  0.0000111881  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0830  CDS  NC_010508  923961  924254  +  294  co-chaperonin GroES  YP_001764130  decreased coverage  0.0000337917  decreased coverage  0.00000232712  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_0831  CDS  NC_010508  924301  925941  +  1641  chaperonin GroEL  YP_001764131  hitchhiker  0.00374886  decreased coverage  0.00000389435  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1069  CDS  NC_010508  1174245  1177415  -  3171  ribonuclease  YP_001764368  normal  0.17751  decreased coverage  0.00648425  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1125  CDS  NC_010508  1226049  1226855  +  807  methionine aminopeptidase, type I  YP_001764422  decreased coverage  0.000764219  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1179  CDS  NC_010508  1291306  1291947  +  642  NAD-dependent epimerase/dehydratase  YP_001764476  decreased coverage  0.000014764  normal  0.222462  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1259  CDS  NC_010508  1378601  1380178  +  1578  lytic transglycosylase catalytic  YP_001764556  decreased coverage  0.00000000373485  normal  0.0984249  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1449  CDS  NC_010508  1603248  1604144  +  897  alpha/beta hydrolase fold  YP_001764746  decreased coverage  0.00111957  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1450  CDS  NC_010508  1604225  1604578  +  354  endoribonuclease L-PSP  YP_001764747  decreased coverage  0.000258277  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1451  CDS  NC_010508  1604618  1606855  +  2238  (p)ppGpp synthetase I, SpoT/RelA  YP_001764748  decreased coverage  0.00161513  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1493  CDS  NC_010508  1658185  1658355  +  171  Flp/Fap pilin component  YP_001764790  decreased coverage  0.0000000000102149  hitchhiker  0.00000902291  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1501  CDS  NC_010508  1665431  1666429  +  999  type II secretion system protein  YP_001764798  normal  1  decreased coverage  0.0000000870782  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1617  CDS  NC_010508  1801351  1802382  +  1032  hypothetical protein  YP_001764912  normal  1  decreased coverage  0.00170035  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_1618  CDS  NC_010508  1802415  1803791  +  1377  lysine/ornithine N-monooxygenase  YP_001764913  normal  1  decreased coverage  0.00185713  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_1619  CDS  NC_010508  1803814  1806078  +  2265  TonB-dependent siderophore receptor  YP_001764914  normal  1  decreased coverage  0.00285071  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_1956  CDS  NC_010508  2176518  2177807  -  1290  RNA-directed DNA polymerase (Reverse transcriptase)  YP_001765239  decreased coverage  0.00339995  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2114  CDS  NC_010508  2353109  2353711  -  603  hypothetical protein  YP_001765397  normal  0.834632  decreased coverage  0.00137784  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2115  CDS  NC_010508  2353720  2354922  -  1203  tryptophanyl-tRNA synthetase  YP_001765398  normal  1  decreased coverage  0.00181226  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2128  CDS  NC_010508  2366018  2366863  -  846  hypothetical protein  YP_001765411  decreased coverage  0.00833807  normal  0.0334295  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2274  CDS  NC_010508  2545101  2545463  -  363  preprotein translocase subunit SecG  YP_001765557  decreased coverage  0.000000142621  normal  0.0890733  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_2414  CDS  NC_010508  2696447  2697523  +  1077  outer membrane protein (porin)-like protein  YP_001765697  normal  0.200003  decreased coverage  0.00381795  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_2416  CDS  NC_010508  2698122  2699840  -  1719  NAD synthetase  YP_001765699  normal  1  decreased coverage  0.00518413  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2441  CDS  NC_010508  2731177  2731824  +  648  OmpA/MotB domain-containing protein  YP_001765724  decreased coverage  0.0000000422184  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2545  CDS  NC_010508  2839218  2839421  +  204  cold-shock DNA-binding domain-containing protein  YP_001765828  hitchhiker  0.000000242015  decreased coverage  0.000000000715587  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_2546  CDS  NC_010508  2839602  2841209  -  1608  multicopper oxidase type 3  YP_001765829  hitchhiker  0.000092872  decreased coverage  0.00000000165067  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_2746  CDS  NC_010508  3060733  3061932  -  1200  acetyl-CoA acetyltransferase  YP_001766028  decreased coverage  0.0055718  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_3170  CDS  NC_010508  3520209  3521168  -  960  alcohol dehydrogenase  YP_001766449  hitchhiker  0.000626479  decreased coverage  0.000000129498  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_3171  CDS  NC_010508  3521165  3522256  -  1092  AraC family transcriptional regulator  YP_001766450  hitchhiker  0.0000000719173  decreased coverage  0.000000135353  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_3172  CDS  NC_010508  3522687  3523100  +  414  glyoxalase/bleomycin resistance protein/dioxygenase  YP_001766451  hitchhiker  0.00000000657624  decreased coverage  0.000000082582  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
-
 
Bcenmc03_3173  CDS  NC_010508  3523141  3523695  -  555  YaeQ family protein  YP_001766452  hitchhiker  0.0000000565771  decreased coverage  0.0000000870782  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_R0017  rRNA  NC_010508  561723  563248  +  1526  16S ribosomal RNA    decreased coverage  0.00000000507425  normal  0.678442  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_R0024  tRNA  NC_010508  856186  856262  -  77  tRNA-Lys    decreased coverage  0.00534379  normal  1  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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Bcenmc03_R0068  tRNA  NC_010508  2544906  2544990  -  85  tRNA-Leu    decreased coverage  0.0000000478917  normal  0.0818589  Burkholderia cenocepacia MC0-3  Bacteria 
 
 
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