116 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BCAH187_A0001  CDS  NC_011658  409  1749  1341  chromosomal replication initiation protein  YP_002336124  decreased coverage  1.84902e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0002  CDS  NC_011658  1928  3067  1140  DNA polymerase III subunit beta  YP_002336125  decreased coverage  8.20509e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0108  CDS  NC_011658  93175  93636  462  transcriptional regulator CtsR  YP_002336197  decreased coverage  1.74069e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0187  rRNA  NC_011658  155961  156076  116  5S ribosomal RNA    decreased coverage  5.35422e-09  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0189  tRNA  NC_011658  156165  156240  76  tRNA-Thr    decreased coverage  5.79129e-09  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0355  CDS  NC_011658  312140  312931  792  hypothetical protein  YP_002336390  decreased coverage  0.00206633  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0401  CDS  NC_011658  359884  361335  1452  succinate-semialdehyde dehydrogenase (NADP+)  YP_002336430  decreased coverage  0.00719001  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0412  CDS  NC_011658  374468  374986  519  hypothetical protein  YP_002336440  decreased coverage  3.41313e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0515  CDS  NC_011658  487280  487858  579  tellurium resistance protein  YP_002336540  decreased coverage  2.04863e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0516  CDS  NC_011658  487931  488722  792  putative tellurium resistance protein  YP_002336541  decreased coverage  3.2211e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0542  CDS  NC_011658  514458  515837  1380  23S rRNA (uracil-5-)-methyltransferase RumA  YP_002336567  decreased coverage  3.51254e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0547  CDS  NC_011658  518991  520412  1422  amino acid permease family protein  YP_002336572  decreased coverage  1.41455e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0550  CDS  NC_011658  522665  523276  612  hypothetical protein  YP_002336575  decreased coverage  7.29048e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0551  CDS  NC_011658  523391  523549  159  hypothetical protein  YP_002336576  decreased coverage  2.90483e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0552  CDS  NC_011658  523643  523948  306  transposase  YP_002336577  decreased coverage  4.66288e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0553  CDS  NC_011658  523915  524799  885  transposase  YP_002336578  decreased coverage  1.71843e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0554  CDS  NC_011658  524858  525199  342  hypothetical protein  YP_002336579  decreased coverage  6.87358e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0555  CDS  NC_011658  525376  526305  930  glutaminase  YP_002336580  decreased coverage  6.37393e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0556  CDS  NC_011658  526375  526488  114  hypothetical protein  YP_002336581  decreased coverage  6.48028e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0557  CDS  NC_011658  526631  528133  1503  pts system, N-acetylglucosamine-specific iibc component  YP_002336582  decreased coverage  4.33182e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0774  CDS  NC_011658  728613  729047  435  HIT family protein  YP_002336777  decreased coverage  3.67298e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0800  CDS  NC_011658  755410  757809  2400  immune inhibitor A metalloprotease  YP_002336803  decreased coverage  4.00442e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0818  CDS  NC_011658  775230  776531  1302  branched-chain amino acid transport system II carrier protein  YP_002336821  decreased coverage  1.57021e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0891  CDS  NC_011658  829623  829853  231  hypothetical protein  YP_002336867  decreased coverage  2.17688e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A0892  CDS  NC_011658  829895  830014  120  hypothetical protein  YP_002336868  decreased coverage  1.75758e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1015  CDS  NC_011658  942347  942997  651  caax amino protease family protein  YP_002336988  decreased coverage  6.09221e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1034  CDS  NC_011658  961660  963660  2001  ABC transporter, permease/ATP-binding protein  YP_002337005  decreased coverage  0.000960134  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1036  CDS  NC_011658  964785  965414  630  amino acid ABC transporter, permease protein  YP_002337007  decreased coverage  6.92373e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1041  CDS  NC_011658  968532  969584  1053  hypothetical protein  YP_002337012  decreased coverage  0.000256007  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1340  CDS  NC_011658  1259528  1260544  1017  oligopeptide ABC transporter, permease protein  YP_002337310  decreased coverage  8.03209e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1343  CDS  NC_011658  1262679  1264073  1395  MATE efflux family protein  YP_002337313  decreased coverage  3.17655e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1391  CDS  NC_011658  1303910  1305388  1479  sodium/proline symporter family protein  YP_002337361  decreased coverage  2.88563e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1546  CDS  NC_011658  1437635  1437790  156  hypothetical protein  YP_002337512  decreased coverage  0.00216199  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1709  CDS  NC_011658  1579318  1582122  2805  bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon  YP_002337671  decreased coverage  6.49538e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1731  CDS  NC_011658  1596482  1598419  1938  hypothetical protein  YP_002337692  decreased coverage  0.000833443  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1732  CDS  NC_011658  1598521  1600038  1518  thermostable carboxypeptidase 1  YP_002337693  decreased coverage  0.00039237  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1746  ncRNA  NC_011658  1611120  1611302  183  6S / SsrS RNA    decreased coverage  9.79511e-09  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1747  ncRNA  NC_011658  1611324  1611507  184  6S / SsrS RNA    decreased coverage  1.09175e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1780  CDS  NC_011658  1648547  1649710  1164  germination protein gerN  YP_002337736  decreased coverage  0.00295662  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1835  CDS  NC_011658  1696312  1697433  1122  flagellin  YP_002337791  decreased coverage  1.80129e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1836  CDS  NC_011658  1697691  1698470  780  transglycosylase, SLT family  YP_002337792  decreased coverage  5.72163e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1837  CDS  NC_011658  1698534  1698758  225  flagellar motor switch protein  YP_002337793  decreased coverage  1.87624e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1901  CDS  NC_011658  1757490  1757888  399  hypothetical protein  YP_002337856  decreased coverage  4.46823e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1902  CDS  NC_011658  1757991  1758404  414  hypothetical protein  YP_002337857  decreased coverage  4.62364e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A1937  CDS  NC_011658  1793662  1794147  486  mutT/nudix family protein  YP_002337891  decreased coverage  2.34527e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2158  CDS  NC_011658  2021690  2022310  621  putative oxidoreductase  YP_002338111  decreased coverage  0.00024659  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2159  CDS  NC_011658  2022335  2022817  483  hypothetical protein  YP_002338112  decreased coverage  0.00020937  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2202  CDS  NC_011658  2058330  2058857  528  group-specific protein  YP_002338155  decreased coverage  4.70019e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2244  CDS  NC_011658  2082894  2083253  360  hypothetical protein  YP_002338197  decreased coverage  0.000172344  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2245  CDS  NC_011658  2083267  2083851  585  putative prophage LambdaBa02, major tail protein  YP_002338198  decreased coverage  0.000292163  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2246  CDS  NC_011658  2083911  2084306  396  hypothetical protein  YP_002338199  decreased coverage  0.000177554  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2247  CDS  NC_011658  2084324  2084464  141  hypothetical protein  YP_002338200  decreased coverage  0.000123737  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2326  CDS  NC_011658  2168095  2169477  1383  UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase  YP_002338279  decreased coverage  3.26996e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2327  CDS  NC_011658  2169861  2171159  1299  aspartyl-tRNA synthetase  YP_002338280  decreased coverage  3.3023e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2463  CDS  NC_011658  2297618  2297917  300  transcriptional regulator, ArsR family  YP_002338416  decreased coverage  2.34537e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2465  CDS  NC_011658  2298858  2299175  318  hypothetical protein  YP_002338418  decreased coverage  2.23912e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2466  CDS  NC_011658  2299374  2299526  153  hypothetical protein  YP_002338419  decreased coverage  1.3952e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2467  CDS  NC_011658  2299523  2300599  1077  putative oxalate:formate antiporter  YP_002338420  decreased coverage  1.34244e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2520  CDS  NC_011658  2355514  2355699  186  hypothetical protein  YP_002338472  decreased coverage  1.40578e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2640  CDS  NC_011658  2463903  2465273  1371  hypothetical protein  YP_002338592  decreased coverage  2.23055e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2657  CDS  NC_011658  2478479  2479105  627  hypothetical protein  YP_002338609  decreased coverage  8.88872e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2746  CDS  NC_011658  2554858  2556066  1209  putative oxalate:formate antiporter  YP_002338696  decreased coverage  3.11684e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2788  CDS  NC_011658  2590942  2591442  501  hypothetical protein  YP_002338738  decreased coverage  1.78794e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2929  CDS  NC_011658  2709924  2710631  708  hypothetical protein  YP_002338879  decreased coverage  3.80267e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2930  CDS  NC_011658  2710650  2711360  711  hypothetical protein  YP_002338880  decreased coverage  3.39143e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2931  CDS  NC_011658  2711374  2711997  624  hypothetical protein  YP_002338881  decreased coverage  2.9751e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2932  CDS  NC_011658  2712156  2713892  1737  extracellular solute-binding protein  YP_002338882  decreased coverage  4.17004e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2933  CDS  NC_011658  2713994  2715232  1239  major facilitator family transporter  YP_002338883  decreased coverage  1.68922e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2934  CDS  NC_011658  2715314  2715982  669  putative lipoprotein  YP_002338884  decreased coverage  2.56201e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2935  CDS  NC_011658  2716011  2716856  846  hypothetical protein  YP_002338885  decreased coverage  4.0418e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A2936  CDS  NC_011658  2716964  2717461  498  hypothetical protein  YP_002338886  decreased coverage  1.69481e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3096  CDS  NC_011658  2863923  2864666  744  phosphatase family protein  YP_002339046  decreased coverage  0.0003834  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3235  CDS  NC_011658  3009681  3011537  1857  mxaA domain protein  YP_002339184  decreased coverage  0.00294865  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3343  CDS  NC_011658  3114147  3114605  459  group-specific protein  YP_002339290  decreased coverage  0.000184371  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3376  CDS  NC_011658  3140820  3141848  1029  ROK family protein  YP_002339322  decreased coverage  0.00191545  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3468  CDS  NC_011658  3225615  3226376  762  ABC transporter, ATP-binding protein  YP_002339412  decreased coverage  9.10882e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3483  CDS  NC_011658  3236724  3237188  465  hypothetical protein  YP_002339427  decreased coverage  0.001415  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3484  CDS  NC_011658  3237293  3237772  480  hypothetical protein  YP_002339428  decreased coverage  0.00169397  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3485  CDS  NC_011658  3237813  3238097  285  AHL-lactonase  YP_002339429  decreased coverage  0.00119776  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3659  CDS  NC_011658  3409454  3410029  576  bioY family protein  YP_002339602  decreased coverage  0.00282906  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3660  CDS  NC_011658  3410153  3411766  1614  medium-chain-fatty-acid--CoA ligase  YP_002339603  decreased coverage  0.00222723  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3763  CDS  NC_011658  3510313  3510537  225  RNA-binding protein Hfq  YP_002339705  decreased coverage  6.32531e-09  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3801  CDS  NC_011658  3546870  3547859  990  phosphatidylinositol diacylglycerol-lyase  YP_002339743  decreased coverage  1.71037e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3976  CDS  NC_011658  3733107  3733280  174  50S ribosomal protein L32  YP_002339913  decreased coverage  1.35237e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A3977  CDS  NC_011658  3733342  3733842  501  hypothetical protein  YP_002339914  decreased coverage  3.34808e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4035  CDS  NC_011658  3772902  3773741  840  hypothetical protein  YP_002339972  decreased coverage  7.3087e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4036  CDS  NC_011658  3774024  3775154  1131  prophage LambdaBa02, site-specific recombinase, phage integrase family  YP_002339973  decreased coverage  1.92232e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4141  CDS  NC_011658  3866175  3867275  1101  sugar ABC transporter, ATP-binding protein  YP_002340075  decreased coverage  7.4393e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4142  CDS  NC_011658  3867331  3867840  510  hypothetical protein  YP_002340076  decreased coverage  1.89852e-05  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4170  CDS  NC_011658  3888210  3888722  513  putative 5-methylthio-3-oxo-1-penten-1,2-diol dioxygenase  YP_002340101  decreased coverage  1.7557e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4171  CDS  NC_011658  3889026  3889301  276  hypothetical protein  YP_002340102  decreased coverage  1.07079e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4173  CDS  NC_011658  3889678  3890556  879  2-hydroxy-3-oxopropionate reductase  YP_002340104  decreased coverage  5.25805e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4182  CDS  NC_011658  3899719  3900567  849  transcription antiterminator GlcT  YP_002340113  decreased coverage  1.03829e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4183  CDS  NC_011658  3900733  3901539  807  hydrolase, haloacid dehalogenase-like family  YP_002340114  decreased coverage  6.31727e-06  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4513  CDS  NC_011658  4177348  4177986  639  uridine kinase  YP_002340440  decreased coverage  2.95414e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4552  CDS  NC_011658  4217926  4218978  1053  S-adenosylmethionine:tRNA ribosyltransferase-isomerase  YP_002340479  decreased coverage  1.0765e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4577  CDS  NC_011658  4241627  4241935  309  50S ribosomal protein L21  YP_002340504  decreased coverage  2.6821e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4746  CDS  NC_011658  4402565  4403578  1014  hypothetical protein  YP_002340669  decreased coverage  8.33207e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4764  CDS  NC_011658  4418401  4419606  1206  argininosuccinate synthase  YP_002340687  decreased coverage  2.72257e-07  n/a    Bacillus cereus AH187  Bacteria 
 
 
-
 
BCAH187_A4790  CDS  NC_011658  4443281  4443883  603  30S ribosomal protein S4  YP_002340713  decreased coverage  7.81758e-08  n/a    Bacillus cereus AH187  Bacteria 
 
 
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