205 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BCG9842_0036  CDS  NC_011775  62387  62770  384  hypothetical protein  YP_002454702  decreased coverage  0.000129054  n/a    Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_0037  CDS  NC_011775  62803  63057  255  recombination protein RecR, putative  YP_002454703  decreased coverage  7.64983e-05  n/a    Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_0040  CDS  NC_011775  64003  64275  273  hypothetical protein  YP_002454706  decreased coverage  6.66277e-05  n/a    Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_0041  CDS  NC_011775  64390  65331  942  hypothetical protein  YP_002454707  decreased coverage  0.000634621  n/a    Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_0100  CDS  NC_011775  106733  108490  1758  hypothetical protein  YP_002454766  decreased coverage  9.07087e-05  n/a    Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_A0019  CDS  NC_011774  77088  84266  7179  PA14 domain protein  YP_002454581  normal  decreased coverage  0.000236303  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_A0028  CDS  NC_011774  103743  104336  594  hypothetical protein  YP_002454590  decreased coverage  0.00152061  normal  0.0102126  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0063  CDS  NC_011772  4935013  4936704  1692  methyl-accepting chemotaxis protein  YP_002448600  decreased coverage  4.82836e-07  normal  0.0217071  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0064  CDS  NC_011772  4934842  4935012  171  hypothetical protein  YP_002448599  decreased coverage  6.39391e-06  normal  0.044272  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0103  CDS  NC_011772  4896207  4896734  528  putative lipoprotein  YP_002448560  decreased coverage  7.46942e-06  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0104  CDS  NC_011772  4895430  4895795  366  hypothetical protein  YP_002448559  decreased coverage  7.25895e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0105  CDS  NC_011772  4895005  4895388  384  glycine cleavage system protein H  YP_002448558  decreased coverage  8.35004e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0124  CDS  NC_011772  4878286  4879182  897  lipoyl synthase  YP_002448540  decreased coverage  0.00208739  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0250  CDS  NC_011772  4783995  4784948  954  1,4-dihydroxy-2-naphthoate octaprenyltransferase  YP_002448440  decreased coverage  2.88761e-06  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0251  CDS  NC_011772  4782406  4783800  1395  menaquinone-specific isochorismate synthase  YP_002448439  decreased coverage  1.39379e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0252  CDS  NC_011772  4780655  4782409  1755  2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase  YP_002448438  decreased coverage  3.22344e-05  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0363  CDS  NC_011772  4681440  4682639  1200  S-adenosylmethionine synthetase  YP_002448329  decreased coverage  5.2915e-06  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0470  CDS  NC_011772  4584212  4585897  1686  putative cytoplasmic protein  YP_002448222  unclonable  2.18322e-08  decreased coverage  4.82818e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0574  CDS  NC_011772  4487378  4487917  540  cvpA family protein  YP_002448119  decreased coverage  4.61155e-06  normal  0.549376  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0670  CDS  NC_011772  4390258  4391646  1389  ribonuclease, Rne/Rng family  YP_002448025  decreased coverage  2.74995e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0672  CDS  NC_011772  4389780  4390088  309  50S ribosomal protein L21  YP_002448024  decreased coverage  5.8928e-09  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0698  CDS  NC_011772  4364253  4365305  1053  S-adenosylmethionine:tRNA ribosyltransferase-isomerase  YP_002447998  decreased coverage  2.53408e-06  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0699  CDS  NC_011772  4363101  4364240  1140  queuine tRNA-ribosyltransferase  YP_002447997  decreased coverage  2.27158e-05  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0730  CDS  NC_011772  4329876  4330289  414  Holliday junction resolvase-like protein  YP_002447966  decreased coverage  5.42239e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0731  CDS  NC_011772  4329585  4329863  279  hypothetical protein  YP_002447965  decreased coverage  3.61513e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0768  CDS  NC_011772  4296324  4296824  501  hypothetical protein  YP_002447928  decreased coverage  1.23691e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0769  CDS  NC_011772  4295398  4296282  885  hydrolase, alpha/beta fold family  YP_002447927  decreased coverage  4.79635e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0785  CDS  NC_011772  4281814  4282383  570  nicotinic acid mononucleotide adenylyltransferase  YP_002447911  decreased coverage  1.27945e-07  hitchhiker  3.88147e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0786  CDS  NC_011772  4281255  4281824  570  hypothetical protein TIGR00488  YP_002447910  decreased coverage  1.08111e-08  hitchhiker  1.58399e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0787  CDS  NC_011772  4280902  4281258  357  iojap-related protein  YP_002447909  decreased coverage  7.1595e-08  hitchhiker  1.38621e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0804  CDS  NC_011772  4263120  4264235  1116  chaperone protein DnaJ  YP_002447892  unclonable  4.35348e-09  decreased coverage  1.53546e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0805  CDS  NC_011772  4262153  4263091  939  ribosomal protein L11 methyltransferase  YP_002447891  hitchhiker  4.61178e-07  decreased coverage  1.14716e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0806  CDS  NC_011772  4261259  4262008  750  16S ribosomal RNA methyltransferase RsmE  YP_002447890  hitchhiker  4.83246e-05  decreased coverage  9.34554e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0807  CDS  NC_011772  4259900  4261252  1353  RNA modification enzyme, MiaB family  YP_002447889  normal  0.0137858  decreased coverage  2.64257e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0808  CDS  NC_011772  4259405  4259578  174  30S ribosomal protein S21  YP_002447888  normal  0.010584  decreased coverage  5.01668e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0809  CDS  NC_011772  4258946  4259389  444  gatB/Yqey domain protein  YP_002447887  normal  0.0147844  decreased coverage  6.39338e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0810  CDS  NC_011772  4258685  4258810  126  putative cytoplasmic protein  YP_002447886  normal  0.0316479  decreased coverage  4.17209e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0811  CDS  NC_011772  4258180  4258320  141  putative cytoplasmic protein  YP_002447885  normal  0.0189317  decreased coverage  4.13124e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0812  CDS  NC_011772  4257471  4257764  294  sporulation protein YqfC  YP_002447884  normal  0.0459506  decreased coverage  3.89709e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0813  CDS  NC_011772  4256124  4257323  1200  sporulation protein  YP_002447883  normal  0.359866  decreased coverage  1.75901e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0814  CDS  NC_011772  4255161  4256120  960  PhoH family protein  YP_002447882  normal  0.429473  decreased coverage  1.44799e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0815  CDS  NC_011772  4252822  4254966  2145  metal-dependent phosphohydrolase  YP_002447881  normal  0.0549314  decreased coverage  1.01368e-21  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0816  CDS  NC_011772  4252355  4252825  471  putative metalloprotease  YP_002447880  hitchhiker  0.000207338  decreased coverage  7.68731e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0817  CDS  NC_011772  4252005  4252358  354  diacylglycerol kinase  YP_002447879  hitchhiker  0.00045614  decreased coverage  5.63656e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0818  CDS  NC_011772  4251507  4251905  399  cytidine deaminase  YP_002447878  hitchhiker  0.000529216  decreased coverage  5.58138e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0819  CDS  NC_011772  4250609  4251514  906  GTP-binding protein Era  YP_002447877  hitchhiker  0.000201776  decreased coverage  1.20434e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0820  CDS  NC_011772  4250289  4250432  144  hypothetical protein  YP_002447876  hitchhiker  9.30502e-05  decreased coverage  4.01246e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0821  CDS  NC_011772  4249509  4250255  747  DNA repair protein RecO  YP_002447875  hitchhiker  0.000159175  decreased coverage  1.09268e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0822  CDS  NC_011772  4248769  4249401  633  CBS domain protein  YP_002447874  hitchhiker  0.000129244  decreased coverage  1.04097e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0824  CDS  NC_011772  4247428  4247559  132  hypothetical protein  YP_002447872  hitchhiker  3.51308e-05  decreased coverage  7.76329e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0825  CDS  NC_011772  4247148  4247291  144  hypothetical protein  YP_002447871  hitchhiker  3.91166e-05  decreased coverage  8.15181e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0826  CDS  NC_011772  4245270  4247066  1797  DNA primase  YP_002447870  hitchhiker  1.25124e-06  decreased coverage  1.52163e-21  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0827  CDS  NC_011772  4244083  4245210  1128  RNA polymerase sigma factor RpoD  YP_002447869  unclonable  8.04536e-09  decreased coverage  6.75333e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0876  CDS  NC_011772  4199217  4200611  1395  sodium:dicarboxylate symporter family protein  YP_002447823  decreased coverage  2.42898e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0947  CDS  NC_011772  4148786  4150678  1893  1-deoxy-D-xylulose-5-phosphate synthase  YP_002447752  decreased coverage  5.9556e-06  decreased coverage  8.5811e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0948  CDS  NC_011772  4147943  4148782  840  hemolysin A  YP_002447751  unclonable  8.7786e-10  decreased coverage  1.3909e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0949  CDS  NC_011772  4147351  4147800  450  arginine repressor  YP_002447750  hitchhiker  2.74725e-06  decreased coverage  1.85245e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B0970  CDS  NC_011772  4125996  4126148  153  hypothetical protein  YP_002447729  decreased coverage  1.12042e-05  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1040  CDS  NC_011772  4066017  4067201  1185  phosphopentomutase  YP_002447661  decreased coverage  0.000119876  hitchhiker  0.000224801  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1042  CDS  NC_011772  4063871  4065175  1305  pyrimidine-nucleoside phosphorylase  YP_002447659  hitchhiker  0.00204257  decreased coverage  1.53983e-05  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1043  CDS  NC_011772  4062847  4063797  951  magnesium and cobalt transport protein CorA  YP_002447658  decreased coverage  7.24407e-05  decreased coverage  5.04287e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1044  CDS  NC_011772  4061526  4062815  1290  xanthine/uracil permease family protein  YP_002447657  hitchhiker  0.00361289  decreased coverage  3.48992e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1078  CDS  NC_011772  4033789  4034637  849  transcription antiterminator GlcT  YP_002447623  decreased coverage  0.000114495  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1079  CDS  NC_011772  4031386  4033449  2064  PTS system, glucose-specific IIABC component  YP_002447622  decreased coverage  4.15149e-06  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1115  CDS  NC_011772  4004755  4004895  141  hypothetical protein  YP_002447588  decreased coverage  6.17263e-08  normal  0.0997623  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1116  CDS  NC_011772  4004181  4004690  510  hypothetical protein  YP_002447587  decreased coverage  2.28176e-07  normal  0.206428  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1134  CDS  NC_011772  3984039  3985580  1542  drug resistance transporter, EmrB/QacA family  YP_002447570  decreased coverage  2.14385e-07  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1135  CDS  NC_011772  3983135  3983635  501  hypothetical protein  YP_002447569  decreased coverage  0.000285581  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1235  CDS  NC_011772  3892556  3893473  918  sporulation sigma-E factor processing peptidase  YP_002447470  decreased coverage  5.03197e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1236  CDS  NC_011772  3891817  3892536  720  sporulation sigma factor SigE  YP_002447469  decreased coverage  2.4975e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1248  CDS  NC_011772  3881593  3882501  909  ribosomal large subunit pseudouridine synthase, RluA family  YP_002447457  decreased coverage  0.000362529  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1250  CDS  NC_011772  3880846  3881388  543  bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase  YP_002447456  decreased coverage  0.00115114  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1271  CDS  NC_011772  3859362  3860237  876  hypothetical protein  YP_002447437  decreased coverage  0.00975001  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1329  CDS  NC_011772  3799022  3799492  471  hypothetical protein  YP_002447380  decreased coverage  3.01231e-06  hitchhiker  9.03983e-05  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1408  CDS  NC_011772  3732707  3733432  726  transcriptional regulator, GntR family  YP_002447303  decreased coverage  1.66649e-08  hitchhiker  0.000517226  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1437  CDS  NC_011772  3693117  3694958  1842  serine protease, subtilase family  YP_002447274  decreased coverage  6.06827e-07  hitchhiker  0.00102573  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1449  CDS  NC_011772  3681910  3682230  321  hypothetical protein  YP_002447262  normal  decreased coverage  1.54464e-08  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1451  CDS  NC_011772  3677977  3680721  2745  sensory box/ggdef family  YP_002447260  normal  decreased coverage  2.57716e-07  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1489  CDS  NC_011772  3644166  3645119  954  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_002447222  decreased coverage  2.44988e-08  normal  0.0137119  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1490  CDS  NC_011772  3643920  3644144  225  RNA-binding protein Hfq  YP_002447221  decreased coverage  1.77401e-08  normal  0.0133073  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1545  CDS  NC_011772  3596469  3597383  915  transporter, Drug/Metabolite Exporter family  YP_002447166  normal  0.0256706  decreased coverage  0.0067742  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1546  CDS  NC_011772  3596354  3596470  117  hypothetical protein  YP_002447165  hitchhiker  0.00895235  decreased coverage  0.00414171  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1602  CDS  NC_011772  3548391  3548681  291  hypothetical protein  YP_002447109  decreased coverage  2.88617e-09  hitchhiker  1.75165e-05  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1603  CDS  NC_011772  3547686  3548282  597  putative glycerol-3-phosphate acyltransferase PlsY  YP_002447108  decreased coverage  7.49627e-09  hitchhiker  1.95206e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1609  CDS  NC_011772  3540181  3542145  1965  DNA topoisomerase IV subunit B  YP_002447102  decreased coverage  9.67673e-06  decreased coverage  6.94445e-13  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1617  CDS  NC_011772  3531519  3532052  534  RNA polymerase sigma-70 factor, ECF subfamily  YP_002447094  decreased coverage  1.4953e-07  hitchhiker  1.7176e-06  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1669  CDS  NC_011772  3472462  3473361  900  BNR repeat domain protein  YP_002447042  unclonable  1.54024e-09  decreased coverage  9.07697e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1670  CDS  NC_011772  3472046  3472246  201  cold shock protein CspB  YP_002447041  unclonable  1.43673e-10  decreased coverage  2.448e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1671  CDS  NC_011772  3471013  3471858  846  exonuclease  YP_002447040  unclonable  1.09537e-09  decreased coverage  8.31519e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1672  CDS  NC_011772  3470280  3470627  348  hypothetical protein  YP_002447039  hitchhiker  7.29534e-08  decreased coverage  3.46903e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1673  CDS  NC_011772  3468935  3470026  1092  hypothetical protein  YP_002447038  hitchhiker  0.000140976  decreased coverage  1.14716e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1674  CDS  NC_011772  3468774  3468890  117  hypothetical protein  YP_002447037  normal  0.0117763  decreased coverage  2.88587e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1675  CDS  NC_011772  3468410  3468748  339  hypothetical protein  YP_002447036  normal  0.0172832  decreased coverage  3.60642e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1676  CDS  NC_011772  3467118  3468029  912  putative lipoprotein  YP_002447035  normal  0.0114871  decreased coverage  9.71885e-23  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1677  CDS  NC_011772  3466034  3466942  909  glyoxalase family protein  YP_002447034  normal  0.0116177  decreased coverage  1.0306e-22  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1774  CDS  NC_011772  3350355  3351389  1035  iron compound ABC transporter, permease protein  YP_002446938  decreased coverage  6.71836e-08  normal  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1830  CDS  NC_011772  3299026  3300402  1377  microbial collagenase  YP_002446882  decreased coverage  1.67843e-06  normal  0.0782319  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1831  CDS  NC_011772  3298449  3298865  417  XoxI  YP_002446881  decreased coverage  3.6824e-06  normal  0.167338  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1938  CDS  NC_011772  3205891  3206217  327  hypothetical protein  YP_002446777  decreased coverage  0.00901142  normal  0.0308524  Bacillus cereus G9842  Bacteria 
 
 
-
 
BCG9842_B1939  CDS  NC_011772  3204157  3205857  1701  hypothetical protein  YP_002446776  normal  0.0604558  decreased coverage  0.0034768  Bacillus cereus G9842  Bacteria 
 
 
-
 
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