163 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Shew185_0021  CDS  NC_009665  27429  27737  309  regulatory protein ArsR  YP_001364257  decreased coverage  0.00282375  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0230  CDS  NC_009665  264291  265544  1254  tetratricopeptide domain-containing protein  YP_001364464  decreased coverage  7.73017e-07  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0254  CDS  NC_009665  293625  294311  687  two component transcriptional regulator  YP_001364488  decreased coverage  3.26652e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0255  CDS  NC_009665  294692  295216  525  protein of unknown function Spy-related  YP_001364489  decreased coverage  4.30973e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0375  CDS  NC_009665  419390  420613  1224  phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase  YP_001364607  decreased coverage  9.3219e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0376  CDS  NC_009665  420736  421413  678  DNA repair protein RadC  YP_001364608  decreased coverage  0.000147811  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0405  CDS  NC_009665  454474  455661  1188  cell division protein FtsZ  YP_001364637  decreased coverage  1.19039e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0430  CDS  NC_009665  485574  487967  2394  TonB-dependent receptor  YP_001364661  decreased coverage  2.61093e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0555  CDS  NC_009665  639914  641281  1368  major facilitator transporter  YP_001364786  decreased coverage  6.5492e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0568  CDS  NC_009665  658564  659733  1170  UDP-glucose/GDP-mannose dehydrogenase  YP_001364796  decreased coverage  0.00339328  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0604  CDS  NC_009665  722296  722979  684  two component transcriptional regulator  YP_001364828  decreased coverage  0.00704602  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0687  CDS  NC_009665  831307  832038  732  ABC transporter related  YP_001364907  decreased coverage  0.000839172  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0688  CDS  NC_009665  832035  832589  555  cell envelope biogenesis YhbN  YP_001364908  decreased coverage  0.00274419  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0701  CDS  NC_009665  843022  844134  1113  AFG1 family ATPase  YP_001364921  decreased coverage  1.96074e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0719  CDS  NC_009665  861501  861965  465  putative chemotaxis protein CheX  YP_001364939  decreased coverage  1.37536e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0729  CDS  NC_009665  870914  871522  609  hypothetical protein  YP_001364949  decreased coverage  0.000945881  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0730  CDS  NC_009665  871519  871749  231  hypothetical protein  YP_001364950  decreased coverage  0.00157281  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0789  CDS  NC_009665  923040  924080  1041  porin  YP_001365009  decreased coverage  1.29455e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0800  CDS  NC_009665  935835  937085  1251  RND family efflux transporter MFP subunit  YP_001365020  decreased coverage  6.42362e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0848  CDS  NC_009665  1006250  1007164  915  glutamate--tRNA ligase  YP_001365065  decreased coverage  1.66391e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0849  CDS  NC_009665  1007328  1007771  444  TraR/DksA family transcriptional regulator  YP_001365066  decreased coverage  1.07681e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0892  CDS  NC_009665  1055062  1056036  975  hypothetical protein  YP_001365109  decreased coverage  2.94447e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0893  CDS  NC_009665  1056275  1059130  2856  bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase  YP_001365110  decreased coverage  0.00037517  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0909  CDS  NC_009665  1078841  1079755  915  ErfK/YbiS/YcfS/YnhG family protein  YP_001365126  decreased coverage  0.00324267  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0936  CDS  NC_009665  1116245  1117651  1407  hypothetical protein  YP_001365153  decreased coverage  1.04038e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_0971  CDS  NC_009665  1158731  1159246  516  hypothetical protein  YP_001365187  decreased coverage  0.00218395  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1035  CDS  NC_009665  1231926  1232921  996  polyprenyl synthetase  YP_001365250  decreased coverage  5.87704e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1048  CDS  NC_009665  1243057  1244361  1305  SurA domain-containing protein  YP_001365263  decreased coverage  0.000188646  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1069  CDS  NC_009665  1268476  1268781  306  hypothetical protein  YP_001365284  decreased coverage  2.77131e-11  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1085  CDS  NC_009665  1283224  1283985  762  putative lipoprotein  YP_001365300  decreased coverage  4.46586e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1089  CDS  NC_009665  1288861  1289328  468  hypothetical protein  YP_001365304  decreased coverage  3.60525e-07  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1111  CDS  NC_009665  1320923  1321879  957  transaldolase B  YP_001365326  decreased coverage  2.40039e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1112  CDS  NC_009665  1322130  1323239  1110  OmpA/MotB domain-containing protein  YP_001365327  decreased coverage  0.00190106  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1118  CDS  NC_009665  1330607  1330873  267  30S ribosomal protein S20  YP_001365333  decreased coverage  4.08096e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1144  CDS  NC_009665  1363308  1364243  936  ATPase BadF/BadG/BcrA/BcrD type  YP_001365359  decreased coverage  8.62311e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1153  CDS  NC_009665  1374155  1375651  1497  aldehyde dehydrogenase  YP_001365368  decreased coverage  0.00734271  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1166  CDS  NC_009665  1391453  1392553  1101  extracellular solute-binding protein  YP_001365381  decreased coverage  2.90123e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1170  CDS  NC_009665  1395846  1397132  1287  FAD dependent oxidoreductase  YP_001365385  decreased coverage  0.000237219  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1183  CDS  NC_009665  1415528  1416883  1356  Beta-glucosidase  YP_001365398  decreased coverage  0.0012185  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1184    NC_009665  1417151  1418446  1296      decreased coverage  7.35175e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1190  CDS  NC_009665  1428993  1429436  444  GatB/Yqey domain-containing protein  YP_001365404  decreased coverage  3.73209e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1191  CDS  NC_009665  1429443  1429658  216  30S ribosomal protein S21  YP_001365405  decreased coverage  1.1604e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1192  CDS  NC_009665  1429874  1430890  1017  putative DNA-binding/iron metalloprotein/AP endonuclease  YP_001365406  decreased coverage  5.9982e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1244  CDS  NC_009665  1485237  1486154  918  signal peptidase I  YP_001365458  decreased coverage  3.21734e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1285  CDS  NC_009665  1529566  1530216  651  two component LuxR family transcriptional regulator  YP_001365498  decreased coverage  0.000337392  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1286  CDS  NC_009665  1530245  1531423  1179  integral membrane sensor signal transduction histidine kinase  YP_001365499  decreased coverage  2.49738e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1306  CDS  NC_009665  1555553  1558015  2463  TonB-dependent receptor plug  YP_001365519  decreased coverage  1.96501e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1445  CDS  NC_009665  1745241  1745969  729  30S ribosomal protein S2  YP_001365658  decreased coverage  5.63194e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1481  CDS  NC_009665  1789678  1791216  1539  transcriptional regulator, TyrR  YP_001365694  decreased coverage  0.000204273  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1529  CDS  NC_009665  1849168  1849989  822  hypothetical protein  YP_001365740  decreased coverage  1.87706e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1578  CDS  NC_009665  1907448  1909400  1953  decaheme cytochrome c  YP_001365788  decreased coverage  2.05402e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1584  CDS  NC_009665  1917935  1920229  2295  ferrous iron transport protein B  YP_001365794  decreased coverage  1.29381e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1641  CDS  NC_009665  1988593  1989894  1302  peptidase M23B  YP_001365849  decreased coverage  4.35092e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1659  CDS  NC_009665  2006283  2007980  1698  signal transduction histidine kinase, LytS  YP_001365867  decreased coverage  2.13246e-07  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1676  CDS  NC_009665  2025052  2025792  741  hypothetical protein  YP_001365884  decreased coverage  0.0089383  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1706  CDS  NC_009665  2051231  2052790  1560  sulphate transporter  YP_001365912  decreased coverage  2.6912e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1728  CDS  NC_009665  2079833  2080579  747  UMP phosphatase  YP_001365934  decreased coverage  3.38596e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1763  CDS  NC_009665  2123078  2123716  639  pyridoxamine 5'-phosphate oxidase  YP_001365969  decreased coverage  0.0024682  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1794  CDS  NC_009665  2155719  2157953  2235  TonB-dependent receptor  YP_001366000  decreased coverage  5.83553e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1824  CDS  NC_009665  2187704  2188192  489  CreA family protein  YP_001366030  decreased coverage  0.00367873  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1834  CDS  NC_009665  2201489  2202475  987  alpha-L-glutamate ligase  YP_001366040  decreased coverage  2.58771e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1835  CDS  NC_009665  2202496  2202945  450  hypothetical protein  YP_001366041  decreased coverage  1.03495e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1852  CDS  NC_009665  2214109  2214471  363  hypothetical protein  YP_001366058  decreased coverage  0.000559481  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1861  CDS  NC_009665  2219983  2221251  1269  phage integrase family protein  YP_001366067  decreased coverage  0.00488759  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1881  CDS  NC_009665  2246629  2247072  444  protein tyrosine phosphatase  YP_001366087  decreased coverage  0.00734553  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1922  CDS  NC_009665  2290020  2291648  1629  glucan biosynthesis protein G  YP_001366128  decreased coverage  2.09795e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1940  CDS  NC_009665  2316575  2317975  1401  asparaginyl-tRNA synthetase  YP_001366146  decreased coverage  1.74697e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1941  CDS  NC_009665  2318126  2318461  336  hypothetical protein  YP_001366147  decreased coverage  7.0025e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1942  CDS  NC_009665  2318526  2319113  588  NUDIX hydrolase  YP_001366148  decreased coverage  1.58411e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1943  CDS  NC_009665  2319145  2320557  1413  para-aminobenzoate synthase, subunit I  YP_001366149  decreased coverage  1.10873e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1944  CDS  NC_009665  2320677  2322221  1545  tartrate/fumarate subfamily Fe-S type hydro-lyase alpha subunit  YP_001366150  decreased coverage  1.79497e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1951  CDS  NC_009665  2332795  2334087  1293  phage integrase family protein  YP_001366157  decreased coverage  6.46207e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1992  CDS  NC_009665  2372369  2372779  411  hypothetical protein  YP_001366198  decreased coverage  0.00734553  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_1993  CDS  NC_009665  2372816  2373073  258  hypothetical protein  YP_001366199  decreased coverage  0.00815859  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2001  CDS  NC_009665  2383486  2386089  2604  TonB-dependent receptor  YP_001366207  decreased coverage  0.00988263  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2011  CDS  NC_009665  2398699  2399490  792  hydroxyacylglutathione hydrolase  YP_001366217  decreased coverage  1.46784e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2012  CDS  NC_009665  2399645  2400382  738  methyltransferase type 11  YP_001366218  decreased coverage  9.22882e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2013  CDS  NC_009665  2400416  2401354  939  LysR family transcriptional regulator  YP_001366219  decreased coverage  2.07825e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2017  CDS  NC_009665  2404833  2406815  1983  sodium/hydrogen exchanger  YP_001366223  decreased coverage  1.55921e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2056  CDS  NC_009665  2468063  2468731  669  putative sulfite oxidase subunit YedZ  YP_001366261  decreased coverage  3.05808e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2057  CDS  NC_009665  2468890  2469300  411  lactoylglutathione lyase  YP_001366262  decreased coverage  8.66783e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2059  CDS  NC_009665  2470032  2470673  642  endonuclease III  YP_001366264  decreased coverage  4.03968e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2060  CDS  NC_009665  2470911  2471609  699  electron transport complex RsxE subunit  YP_001366265  decreased coverage  2.14893e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2089  CDS  NC_009665  2495782  2497368  1587  hypothetical protein  YP_001366294  decreased coverage  0.00551419  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2112  CDS  NC_009665  2520063  2520824  762  DNA adenine methylase  YP_001366317  decreased coverage  2.92224e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2127  CDS  NC_009665  2536562  2538841  2280  acyl-CoA dehydrogenase  YP_001366332  decreased coverage  0.00720758  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2130  CDS  NC_009665  2541904  2543376  1473  glucose-6-phosphate 1-dehydrogenase  YP_001366335  decreased coverage  0.00145031  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2154  CDS  NC_009665  2569077  2569976  900  hypothetical protein  YP_001366359  decreased coverage  9.26677e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2166  CDS  NC_009665  2583594  2584073  480  hypothetical protein  YP_001366371  decreased coverage  0.000514786  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2181  CDS  NC_009665  2600990  2601946  957  hypothetical protein  YP_001366386  decreased coverage  2.2889e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2205  CDS  NC_009665  2632393  2633052  660  hypothetical protein  YP_001366407  decreased coverage  3.21186e-09  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2255  CDS  NC_009665  2686764  2688857  2094  prolyl oligopeptidase  YP_001366456  decreased coverage  2.70623e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2256  CDS  NC_009665  2689069  2689548  480  MarR family transcriptional regulator  YP_001366457  decreased coverage  2.54584e-07  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2263  CDS  NC_009665  2696364  2697479  1116  phage integrase family protein  YP_001366464  decreased coverage  0.00650578  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2272  CDS  NC_009665  2708298  2710055  1758  acyl-CoA dehydrogenase domain-containing protein  YP_001366473  decreased coverage  1.31801e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2287  CDS  NC_009665  2725465  2728215  2751  DNA gyrase, A subunit  YP_001366488  decreased coverage  9.28458e-06  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2361  CDS  NC_009665  2817451  2818641  1191  glutamine--scyllo-inositol transaminase  YP_001366562  decreased coverage  2.03792e-05  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2381  CDS  NC_009665  2838375  2838713  339  ferredoxin, 2Fe-2S type, ISC system  YP_001366582  decreased coverage  4.96454e-10  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2382  CDS  NC_009665  2838722  2840584  1863  chaperone protein HscA  YP_001366583  decreased coverage  6.22111e-07  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
Shew185_2388  CDS  NC_009665  2844046  2844867  822  serine O-acetyltransferase  YP_001366589  decreased coverage  5.58111e-08  n/a    Shewanella baltica OS185  Bacteria 
 
 
-
 
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