35 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Plav_0003  CDS  NC_009719  1568  3127  1560  chromosomal replication initiator protein DnaA  YP_001411283  decreased coverage  1.18183e-08  unclonable  1.22456e-24  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0023  CDS  NC_009719  24241  25362  1122  hypothetical protein  YP_001411303  decreased coverage  0.00775976  normal  0.0839132  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0117  CDS  NC_009719  128691  130109  1419  S-adenosyl-L-homocysteine hydrolase  YP_001411397  decreased coverage  0.00161182  normal  0.625216  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0451  CDS  NC_009719  485387  485659  273  hypothetical protein  YP_001411731  decreased coverage  0.00606209  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0452  CDS  NC_009719  485705  486556  852  MscS mechanosensitive ion channel  YP_001411732  decreased coverage  0.00426986  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0541  CDS  NC_009719  584628  587813  3186  trehalose synthase  YP_001411821  decreased coverage  0.00661441  normal  0.174056  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_0651  CDS  NC_009719  715173  715829  657  TetR family transcriptional regulator  YP_001411931  decreased coverage  0.0025795  normal  0.249536  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1329  CDS  NC_009719  1464775  1465509  735  extensin family protein  YP_001412606  normal  decreased coverage  1.97088e-11  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1330  CDS  NC_009719  1465615  1466094  480  nuclease  YP_001412607  normal  decreased coverage  1.42245e-11  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1331  CDS  NC_009719  1466246  1468189  1944  acetate--CoA ligase  YP_001412608  normal  decreased coverage  1.84836e-11  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1401  CDS  NC_009719  1533080  1533829  750  hypothetical protein  YP_001412678  decreased coverage  0.00664299  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1616  CDS  NC_009719  1752237  1752464  228  CopG/DNA-binding domain-containing protein  YP_001412892  decreased coverage  4.28775e-13  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1791  CDS  NC_009719  1944823  1945278  456  hypothetical protein  YP_001413066  decreased coverage  0.00490564  normal  0.234102  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1996  CDS  NC_009719  2180080  2181012  933  lytic transglycosylase catalytic  YP_001413267  decreased coverage  1.4768e-09  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_1997  CDS  NC_009719  2181397  2182419  1023  N-formylglutamate amidohydrolase  YP_001413268  decreased coverage  1.5769e-08  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2077  CDS  NC_009719  2262530  2263555  1026  sulfate ABC transporter, periplasmic sulfate-binding protein  YP_001413348  decreased coverage  4.02733e-11  hitchhiker  3.51214e-15  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2328  CDS  NC_009719  2506554  2508593  2040  hypothetical protein  YP_001413599  normal  0.337354  decreased coverage  0.000143691  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2329  CDS  NC_009719  2508965  2510104  1140  hypothetical protein  YP_001413600  normal  decreased coverage  0.000288804  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2330  CDS  NC_009719  2510371  2510901  531  hypothetical protein  YP_001413601  normal  decreased coverage  0.000159643  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2400  CDS  NC_009719  2587383  2588375  993  methyltransferase type 11  YP_001413666  normal  decreased coverage  0.00744372  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2419  CDS  NC_009719  2611487  2612890  1404  UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase  YP_001413685  decreased coverage  0.00927705  normal  0.776688  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2426  CDS  NC_009719  2619541  2620851  1311  cell division protein FtsA  YP_001413692  decreased coverage  1.16428e-06  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2436  CDS  NC_009719  2635293  2637629  2337  UvrD/REP helicase  YP_001413702  decreased coverage  0.0016628  normal  0.650689  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2474  CDS  NC_009719  2675196  2676401  1206  phosphoribosylglycinamide formyltransferase 2  YP_001413740  decreased coverage  0.00530276  normal  0.239211  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2499  CDS  NC_009719  2700927  2701313  387  hypothetical protein  YP_001413765  normal  0.300029  decreased coverage  0.000130725  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2500  CDS  NC_009719  2701504  2702613  1110  hypothetical protein  YP_001413766  normal  decreased coverage  0.000111187  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2607  CDS  NC_009719  2812001  2814787  2787  methylase  YP_001413872  normal  0.483035  decreased coverage  0.00951903  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2609  CDS  NC_009719  2815816  2816589  774  class II aldolase/adducin family protein  YP_001413874  normal  0.79052  decreased coverage  0.00794454  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2878  CDS  NC_009719  3082582  3082869  288  excinuclease ABC subunit C  YP_001414142  decreased coverage  0.00418139  hitchhiker  0.000396722  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2903  CDS  NC_009719  3104534  3105733  1200  peptidoglycan binding domain-containing protein  YP_001414167  normal  decreased coverage  8.18135e-05  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2904  CDS  NC_009719  3105766  3106542  777  glycerophosphoryl diester phosphodiesterase  YP_001414168  normal  decreased coverage  6.0141e-05  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2909  CDS  NC_009719  3110537  3111025  489  ATP-cone domain-containing protein  YP_001414173  decreased coverage  7.66609e-06  hitchhiker  0.00220576  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2910  CDS  NC_009719  3111080  3112198  1119  riboflavin biosynthesis protein RibD  YP_001414174  decreased coverage  4.082e-05  hitchhiker  0.00190231  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_2943  CDS  NC_009719  3139547  3141541  1995  poly(R)-hydroxyalkanoic acid synthase, class I  YP_001414207  decreased coverage  0.000122765  hitchhiker  0.00212839  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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Plav_3055  CDS  NC_009719  3259935  3262496  2562  Pyrrolo-quinoline quinone  YP_001414319  decreased coverage  0.000520854  normal  Parvibaculum lavamentivorans DS-1  Bacteria 
 
 
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