164 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ent638_0101  CDS  NC_009436  119306  119971  666  DNA repair protein RadC  YP_001174842  decreased coverage  7.16823e-05  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0216  CDS  NC_009436  248731  250383  1653  bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase  YP_001174957  decreased coverage  1.46667e-05  decreased coverage  0.0046283  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0377  CDS  NC_009436  428359  428979  621  peptidyl-prolyl cis-trans isomerase  YP_001175116  decreased coverage  4.44848e-06  normal  0.152063  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0378  CDS  NC_009436  429287  430696  1410  D-alanine/D-serine/glycine permease  YP_001175117  decreased coverage  0.000253333  normal  0.311262  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0450  CDS  NC_009436  508227  509231  1005  ornithine carbamoyltransferase  YP_001175189  normal  0.601732  decreased coverage  0.00517058  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0467  CDS  NC_009436  533304  534407  1104  hypothetical protein  YP_001175206  decreased coverage  0.0031489  normal  0.0774266  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0514  CDS  NC_009436  582728  585025  2298  phosphoglycerol transferase I  YP_001175252  normal  decreased coverage  0.00200662  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0522  CDS  NC_009436  589442  590218  777  hypothetical protein  YP_001175260  normal  decreased coverage  0.00205537  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0523  CDS  NC_009436  590598  591320  723  response regulator receiver protein  YP_001175261  normal  0.335975  decreased coverage  0.00189861  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0524  CDS  NC_009436  591332  591967  636  DNA-binding transcriptional activator BglJ  YP_001175262  normal  0.441884  decreased coverage  0.00182445  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0525  CDS  NC_009436  592013  592471  459  YbaK/prolyl-tRNA synthetase associated region  YP_001175263  normal  decreased coverage  0.00173992  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0540  CDS  NC_009436  605501  607048  1548  hypothetical protein  YP_001175278  decreased coverage  0.00218193  normal  0.0510318  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0581  CDS  NC_009436  653823  654725  903  transcriptional activator NhaR  YP_001175319  decreased coverage  1.22436e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0582  CDS  NC_009436  654783  655046  264  30S ribosomal protein S20  YP_001175320  decreased coverage  1.60392e-07  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0613  CDS  NC_009436  692985  693692  708  thiamine transporter ATP-binding subunit  YP_001175351  normal  decreased coverage  0.00339091  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0641  CDS  NC_009436  726244  727395  1152  cell division protein FtsZ  YP_001175379  decreased coverage  9.696e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0684  CDS  NC_009436  775720  776610  891  glutamyl-Q tRNA(Asp) synthetase  YP_001175422  decreased coverage  0.000131697  normal  0.627164  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0717  CDS  NC_009436  816457  817482  1026  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001175455  decreased coverage  1.25604e-05  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0738  CDS  NC_009436  837296  837856  561  D,D-heptose 1,7-bisphosphate phosphatase  YP_001175476  decreased coverage  3.39736e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0774  CDS  NC_009436  878600  879334  735  hypothetical protein  YP_001175510  decreased coverage  3.46015e-05  normal  0.0120548  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0775  CDS  NC_009436  879351  880022  672  hypothetical protein  YP_001175511  decreased coverage  0.000124553  hitchhiker  0.00377905  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0776  CDS  NC_009436  880019  880690  672  exodeoxyribonuclease X  YP_001175512  decreased coverage  0.000394057  hitchhiker  0.00105392  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0779  CDS  NC_009436  881600  881737  138  hypothetical protein  YP_001175515  decreased coverage  0.000104944  hitchhiker  0.000883196  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_0780  CDS  NC_009436  881961  882683  723  putative phage repressor  YP_001175516  hitchhiker  0.00131571  decreased coverage  0.000230988  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1007  CDS  NC_009436  1115734  1116024  291  hypothetical protein  YP_001175741  decreased coverage  0.00436476  unclonable  2.24655e-06  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1008  CDS  NC_009436  1116277  1116507  231  hypothetical protein  YP_001175742  decreased coverage  0.00304047  unclonable  2.20106e-06  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1057  CDS  NC_009436  1155590  1156675  1086  putative periplasmic protein  YP_001175790  decreased coverage  0.00889034  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1084  CDS  NC_009436  1190025  1193123  3099  hydrophobe/amphiphile efflux-1 (HAE1) family protein  YP_001175816  decreased coverage  0.00807146  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1192  CDS  NC_009436  1310113  1311261  1149  N-acetylglucosamine-6-phosphate deacetylase  YP_001175924  normal  0.936506  decreased coverage  2.00711e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1193  CDS  NC_009436  1311321  1312121  801  glucosamine-6-phosphate deaminase  YP_001175925  normal  0.455857  decreased coverage  1.86217e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1194  CDS  NC_009436  1312446  1314467  2022  PTS system, N-acetylglucosamine-specific IIBC subunit  YP_001175926  normal  0.584721  decreased coverage  2.33153e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1195  CDS  NC_009436  1314639  1316306  1668  glutaminyl-tRNA synthetase  YP_001175927  normal  0.068426  decreased coverage  2.65755e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1196  CDS  NC_009436  1316747  1318144  1398  outer membrane porin  YP_001175928  hitchhiker  0.000266112  decreased coverage  3.40238e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1203  CDS  NC_009436  1322022  1323662  1641  phosphoglucomutase  YP_001175935  hitchhiker  0.00228618  decreased coverage  4.55474e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1204  CDS  NC_009436  1323775  1325088  1314  putrescine transporter  YP_001175936  normal  0.658764  decreased coverage  3.77329e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1205  CDS  NC_009436  1325085  1327313  2229  ornithine decarboxylase  YP_001175937  normal  decreased coverage  5.4905e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1351  CDS  NC_009436  1483632  1483802  171  hypothetical protein  YP_001176083  decreased coverage  0.0062634  normal  0.97074  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1413  CDS  NC_009436  1550635  1551129  495  leucine-responsive transcriptional regulator  YP_001176144  decreased coverage  1.35875e-05  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1429  CDS  NC_009436  1574000  1574683  684  cytidylate kinase  YP_001176160  decreased coverage  0.000204841  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1430  CDS  NC_009436  1574794  1576467  1674  30S ribosomal protein S1  YP_001176161  decreased coverage  0.00086358  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1458  CDS  NC_009436  1611626  1612168  543  hypothetical protein  YP_001176189  decreased coverage  0.00224961  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1564  CDS  NC_009436  1717942  1719543  1602  glucan biosynthesis protein G  YP_001176294  decreased coverage  8.05878e-05  normal  0.762961  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1630  CDS  NC_009436  1783724  1784797  1074  acyltransferase 3  YP_001176360  decreased coverage  0.00419884  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1676  CDS  NC_009436  1826994  1827407  414  methionine sulfoxide reductase B  YP_001176406  decreased coverage  0.000216334  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1811  CDS  NC_009436  1967124  1968398  1275  tyrosyl-tRNA synthetase  YP_001176541  hitchhiker  0.00221389  decreased coverage  0.000321192  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1812  CDS  NC_009436  1968462  1969322  861  pyridoxamine kinase  YP_001176542  hitchhiker  0.000723622  decreased coverage  0.000302478  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1813  CDS  NC_009436  1969379  1969984  606  glutathionine S-transferase  YP_001176543  hitchhiker  0.000409061  decreased coverage  0.000277297  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1814  CDS  NC_009436  1970094  1971602  1509  putative tripeptide transporter permease  YP_001176544  decreased coverage  6.84589e-06  decreased coverage  0.000347242  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1815  CDS  NC_009436  1972222  1972857  636  endonuclease III  YP_001176545  hitchhiker  0.000116865  decreased coverage  0.000297282  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1816  CDS  NC_009436  1972854  1973540  687  electron transport complex RsxE subunit  YP_001176546  normal  0.0219521  decreased coverage  0.000344211  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1817  CDS  NC_009436  1973543  1974163  621  electron transport complex protein RnfG  YP_001176547  normal  0.0386367  decreased coverage  0.000324023  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1818  CDS  NC_009436  1974173  1975225  1053  electron transport complex protein RnfD  YP_001176548  normal  0.452065  decreased coverage  0.000391515  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1819  CDS  NC_009436  1975226  1977247  2022  electron transport complex protein RnfC  YP_001176549  normal  decreased coverage  0.000614228  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_1943  CDS  NC_009436  2105327  2107966  2640  hypothetical protein  YP_001176670  decreased coverage  0.00013464  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2020  CDS  NC_009436  2192125  2193642  1518  porin, LamB type  YP_001176747  decreased coverage  0.0033188  normal  0.185389  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2188  CDS  NC_009436  2377513  2378682  1170  tetratricopeptide repeat protein  YP_001176914  decreased coverage  1.46225e-05  hitchhiker  5.69887e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2262  CDS  NC_009436  2444430  2445362  933  Pyocin large subunit-like protein  YP_001176984  decreased coverage  5.37713e-06  unclonable  2.75213e-06  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2302  CDS  NC_009436  2477535  2479169  1635  extracellular solute-binding protein  YP_001177022  decreased coverage  0.00365913  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2367  CDS  NC_009436  2559027  2559563  537  disulfide bond formation protein B  YP_001177087  decreased coverage  3.80886e-07  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2393  CDS  NC_009436  2584515  2584724  210  cold shock-like protein CspC  YP_001177113  decreased coverage  1.01532e-07  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2426  CDS  NC_009436  2618923  2619867  945  high-affinity zinc transporter periplasmic component  YP_001177146  decreased coverage  0.000208109  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2427  CDS  NC_009436  2619945  2620700  756  high-affinity zinc transporter ATPase  YP_001177147  decreased coverage  0.000130602  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2471  CDS  NC_009436  2667585  2668010  426  universal stress protein UspC  YP_001177191  decreased coverage  1.43058e-07  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2472  CDS  NC_009436  2668029  2669453  1425  trehalose-6-phosphate synthase  YP_001177192  decreased coverage  4.96896e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2542  CDS  NC_009436  2737911  2738534  624  response regulator receiver protein  YP_001177262  decreased coverage  5.37034e-05  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2563  CDS  NC_009436  2761476  2762426  951  transcriptional regulator Cbl  YP_001177283  decreased coverage  0.00294474  normal  0.0988351  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2564  CDS  NC_009436  2762523  2763440  918  nitrogen assimilation transcriptional regulator  YP_001177284  decreased coverage  0.000767636  normal  0.0977076  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2598  CDS  NC_009436  2801094  2802323  1230  HK97 family phage major capsid protein  YP_001177317  normal  decreased coverage  0.00517058  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2599  CDS  NC_009436  2802333  2802932  600  HK97 family phage prohead protease  YP_001177318  normal  decreased coverage  0.00442603  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2612  CDS  NC_009436  2813093  2813860  768  hypothetical protein  YP_001177331  hitchhiker  0.00283227  decreased coverage  0.00473334  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2613  CDS  NC_009436  2814222  2814800  579  hypothetical protein  YP_001177332  decreased coverage  0.00177056  decreased coverage  0.00476964  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2614  CDS  NC_009436  2814813  2815802  990  hypothetical protein  YP_001177333  normal  0.4112  decreased coverage  0.00553167  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2615  CDS  NC_009436  2815840  2815977  138  hypothetical protein  YP_001177334  normal  decreased coverage  0.00449211  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2616  CDS  NC_009436  2815974  2816894  921  hypothetical protein  YP_001177335  normal  decreased coverage  0.00545088  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2626  CDS  NC_009436  2823077  2824258  1182  phage integrase family protein  YP_001177344  decreased coverage  0.000269871  normal  0.0831358  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2713  CDS  NC_009436  2927866  2929242  1377  diaminobutyrate--2-oxoglutarate aminotransferase  YP_001177429  decreased coverage  4.82772e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2798  CDS  NC_009436  3027481  3030330  2850  hybrid sensory kinase in two-component regulatory system with RcsB and YojN  YP_001177514  decreased coverage  0.000245809  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2833  CDS  NC_009436  3071623  3072561  939  LysR family transcriptional regulator  YP_001177549  decreased coverage  0.000597917  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2847  CDS  NC_009436  3087041  3088060  1020  LacI family transcription regulator  YP_001177563  decreased coverage  6.54986e-06  normal  0.737753  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2880  CDS  NC_009436  3116965  3117450  486  phosphohistidine phosphatase  YP_001177596  decreased coverage  0.00688568  normal  0.224606  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2893  CDS  NC_009436  3133141  3134253  1113  radical SAM domain-containing protein  YP_001177609  decreased coverage  0.00746158  normal  0.722126  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2894  CDS  NC_009436  3134246  3135634  1389  radical SAM domain-containing protein  YP_001177610  decreased coverage  0.00476691  normal  0.460921  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_2941  CDS  NC_009436  3193162  3193923  762  putative sulfate transport protein CysZ  YP_001177656  decreased coverage  5.26268e-07  normal  0.109677  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3000  CDS  NC_009436  3263258  3264631  1374  exodeoxyribonuclease VII large subunit  YP_001177715  decreased coverage  2.10085e-06  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3028  CDS  NC_009436  3295562  3296053  492  DNA-binding transcriptional regulator IscR  YP_001177743  decreased coverage  5.15775e-05  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3063  CDS  NC_009436  3332746  3334074  1329  ATP-dependent RNA helicase SrmB  YP_001177778  normal  0.124776  decreased coverage  3.84662e-05  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3094  CDS  NC_009436  3369400  3369993  594  heat shock protein GrpE  YP_001177809  decreased coverage  1.90441e-07  normal  0.118238  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3148  CDS  NC_009436  3430213  3430392  180  hypothetical protein  YP_001177863  decreased coverage  5.55754e-08  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3149  CDS  NC_009436  3430432  3430836  405  DNA binding protein, nucleoid-associated  YP_001177864  decreased coverage  1.12797e-07  normal  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3227  CDS  NC_009436  3513289  3515094  1806  sulfite reductase subunit alpha  YP_001177942  decreased coverage  0.000595634  normal  0.150506  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3228  CDS  NC_009436  3515460  3515822  363  putative 6-pyruvoyl tetrahydropterin synthase  YP_001177943  decreased coverage  1.54571e-05  normal  0.118863  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3229  CDS  NC_009436  3515855  3516526  672  radical SAM domain-containing protein  YP_001177944  decreased coverage  6.24181e-07  normal  0.126781  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3346  CDS  NC_009436  3652178  3653332  1155  S-adenosylmethionine synthetase  YP_001178059  normal  0.274047  decreased coverage  0.00210424  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3347  CDS  NC_009436  3653723  3655120  1398  sugar transporter  YP_001178060  normal  0.0767559  decreased coverage  0.00268397  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3348  CDS  NC_009436  3655192  3655689  498  hypothetical protein  YP_001178061  hitchhiker  0.000288279  decreased coverage  0.00213814  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3349  CDS  NC_009436  3655784  3656491  708  deoxyribonuclease I  YP_001178062  unclonable  3.15843e-08  decreased coverage  0.00212113  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3350  CDS  NC_009436  3656595  3657326  732  16S ribosomal RNA methyltransferase RsmE  YP_001178063  hitchhiker  5.30934e-05  decreased coverage  0.00215529  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3351  CDS  NC_009436  3657347  3658294  948  glutathione synthetase  YP_001178064  hitchhiker  0.000368137  decreased coverage  0.00227913  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3352  CDS  NC_009436  3658354  3658992  639  hypothetical protein  YP_001178065  normal  0.0115365  decreased coverage  0.00224252  Enterobacter sp. 638  Bacteria 
 
 
-
 
Ent638_3353  CDS  NC_009436  3658992  3659408  417  Holliday junction resolvase-like protein  YP_001178066  normal  0.2584  decreased coverage  0.0020385  Enterobacter sp. 638  Bacteria 
 
 
-
 
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