160 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Spro_0033  CDS  NC_009832  32002  33102  1101  DNA polymerase III subunit beta  YP_001476271  decreased coverage  2.34864e-08  normal  0.233091  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0174  CDS  NC_009832  197585  197827  243  hypothetical protein  YP_001476412  decreased coverage  1.31464e-05  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0213  CDS  NC_009832  240272  241024  753  LuxR family transcriptional regulator  YP_001476451  normal  decreased coverage  0.00305368  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0264  CDS  NC_009832  295466  296080  615  hypothetical protein  YP_001476502  decreased coverage  0.00131939  normal  0.0250602  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0307  CDS  NC_009832  361740  363011  1272  hypothetical protein  YP_001476545  normal  decreased coverage  5.64448e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0308  CDS  NC_009832  363199  363942  744  hypothetical protein  YP_001476546  normal  decreased coverage  4.03318e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0309  CDS  NC_009832  363939  364514  576  hypothetical protein  YP_001476547  normal  decreased coverage  4.193e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0310  CDS  NC_009832  364529  366568  2040  DNA topoisomerase III  YP_001476548  normal  decreased coverage  9.29429e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0311  CDS  NC_009832  367237  367704  468  hypothetical protein  YP_001476549  normal  decreased coverage  3.88022e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0312  CDS  NC_009832  367777  368283  507  single-strand binding protein  YP_001476550  normal  decreased coverage  3.5276e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0313  CDS  NC_009832  368618  368785  168  hypothetical protein  YP_001476551  normal  decreased coverage  3.14424e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0314  CDS  NC_009832  368807  369052  246  hypothetical protein  YP_001476552  normal  decreased coverage  3.23616e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0315  CDS  NC_009832  369227  369493  267  hypothetical protein  YP_001476553  normal  decreased coverage  3.49365e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0493  CDS  NC_009832  544235  546352  2118  polynucleotide phosphorylase/polyadenylase  YP_001476729  decreased coverage  0.000650099  normal  0.24755  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0564  CDS  NC_009832  625855  626925  1071  permease YjgP/YjgQ family protein  YP_001476798  decreased coverage  7.25936e-05  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0680  CDS  NC_009832  747885  748364  480  hypothetical protein  YP_001476914  decreased coverage  4.79478e-06  normal  0.515655  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0681  CDS  NC_009832  748413  749129  717  two-component response regulator  YP_001476915  decreased coverage  2.76194e-06  normal  0.238426  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0693  CDS  NC_009832  764515  765642  1128  chaperone protein DnaJ  YP_001476927  hitchhiker  0.000580174  decreased coverage  0.000845971  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0695  CDS  NC_009832  767251  768144  894  transcriptional activator NhaR  YP_001476929  decreased coverage  1.92027e-08  normal  0.0162728  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0696  CDS  NC_009832  768214  768474  261  ribosomal protein S20  YP_001476930  decreased coverage  2.07001e-09  normal  0.0299142  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_0886  CDS  NC_009832  980289  982862  2574  protein disaggregation chaperone  YP_001477120  decreased coverage  1.76912e-05  normal  0.0332416  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1091  CDS  NC_009832  1199679  1201157  1479  muropeptide transporter  YP_001477323  decreased coverage  2.07294e-06  hitchhiker  5.12549e-06  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1094  CDS  NC_009832  1202832  1204136  1305  trigger factor  YP_001477326  decreased coverage  1.23079e-06  hitchhiker  4.34188e-06  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1113  CDS  NC_009832  1225372  1225686  315  methylated-DNA--protein-cysteine methyltransferase  YP_001477345  decreased coverage  5.14305e-07  hitchhiker  1.45406e-06  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1164  CDS  NC_009832  1281628  1282350  723  UDP-2,3-diacylglucosamine hydrolase  YP_001477396  decreased coverage  1.07116e-06  hitchhiker  0.00427171  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1165  CDS  NC_009832  1282361  1282855  495  peptidyl-prolyl cis-trans isomerase B (rotamase B)  YP_001477397  decreased coverage  5.75228e-05  hitchhiker  0.00399357  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1222  CDS  NC_009832  1340143  1341807  1665  asparagine synthetase B  YP_001477454  decreased coverage  8.23611e-06  normal  0.0246251  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1279  CDS  NC_009832  1405700  1406992  1293  translocation protein TolB  YP_001477511  hitchhiker  3.35238e-07  decreased coverage  5.21877e-06  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1281  CDS  NC_009832  1407562  1408362  801  tol-pal system protein YbgF  YP_001477513  unclonable  2.95525e-10  decreased coverage  4.50337e-06  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1524  CDS  NC_009832  1662227  1663804  1578  malate:quinone oxidoreductase  YP_001477756  decreased coverage  8.01477e-07  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1540  CDS  NC_009832  1676244  1678580  2337  AAA ATPase  YP_001477772  decreased coverage  7.40195e-07  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1602  CDS  NC_009832  1755708  1756745  1038  undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase  YP_001477834  decreased coverage  8.60961e-06  normal  0.0685919  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1603  CDS  NC_009832  1756838  1757986  1149  glycosyl transferase group 1  YP_001477835  decreased coverage  6.02977e-05  normal  0.073151  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1628  CDS  NC_009832  1783695  1784900  1206  Serine-type D-Ala-D-Ala carboxypeptidase  YP_001477860  normal  decreased coverage  0.000206401  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1634  CDS  NC_009832  1791373  1791978  606  undecaprenyl pyrophosphate phosphatase  YP_001477866  normal  0.550126  decreased coverage  0.000150878  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1731  CDS  NC_009832  1904655  1906055  1401  asparaginyl-tRNA synthetase  YP_001477963  decreased coverage  0.00203344  normal  0.724261  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1746  CDS  NC_009832  1925468  1927114  1647  paraquat-inducible protein B  YP_001477978  normal  0.0445264  decreased coverage  7.31619e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1747  CDS  NC_009832  1927111  1927668  558  hypothetical protein  YP_001477979  hitchhiker  0.00777543  decreased coverage  3.70009e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1748  CDS  NC_009832  1927940  1928110  171  ribosome modulation factor  YP_001477980  hitchhiker  0.00186299  decreased coverage  3.05308e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1749  CDS  NC_009832  1928175  1929449  1275  3-oxoacyl-(acyl carrier protein) synthase II  YP_001477981  hitchhiker  0.000505734  decreased coverage  4.98148e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1750  CDS  NC_009832  1929446  1929973  528  HxlR family transcriptional regulator  YP_001477982  hitchhiker  2.37098e-05  decreased coverage  3.33009e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1751  CDS  NC_009832  1930090  1930608  519  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_001477983  hitchhiker  1.586e-07  decreased coverage  3.17479e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1752  CDS  NC_009832  1930677  1932449  1773  putative Lon protease  YP_001477984  hitchhiker  1.64824e-07  decreased coverage  6.03795e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1753  CDS  NC_009832  1932638  1933096  459  hypothetical protein  YP_001477985  hitchhiker  1.37665e-08  decreased coverage  4.11108e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1754  CDS  NC_009832  1933209  1934285  1077  outer membrane protein A  YP_001477986  unclonable  5.40093e-10  decreased coverage  5.07763e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1767  CDS  NC_009832  1945284  1945943  660  hypothetical protein  YP_001477999  decreased coverage  6.91139e-07  hitchhiker  0.00190191  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1850  CDS  NC_009832  2034203  2034751  549  phosphatidylglycerophosphate synthetase  YP_001478081  decreased coverage  0.00069698  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1909  CDS  NC_009832  2092673  2093470  798  4-amino-4-deoxychorismate lyase  YP_001478140  hitchhiker  4.72984e-08  decreased coverage  6.90882e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1910  CDS  NC_009832  2093484  2094509  1026  aminodeoxychorismate lyase  YP_001478141  hitchhiker  9.53369e-09  decreased coverage  7.38863e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1914  CDS  NC_009832  2097274  2098707  1434  PTS system glucose-specific transporter subunits IIBC  YP_001478145  hitchhiker  0.000704692  decreased coverage  8.20581e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1915  CDS  NC_009832  2098764  2099234  471  manganese transport regulator MntR  YP_001478146  hitchhiker  0.00170642  decreased coverage  5.8092e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1916  CDS  NC_009832  2099464  2100768  1305  Mn2+/Fe2+ transporter  YP_001478147  normal  0.0325807  decreased coverage  8.36565e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1932  CDS  NC_009832  2116416  2118026  1611  amino acid/peptide transporter  YP_001478163  decreased coverage  4.63259e-06  hitchhiker  0.00239553  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1933  CDS  NC_009832  2118153  2119094  942  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding  YP_001478164  decreased coverage  5.29764e-05  hitchhiker  0.00191621  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1979  CDS  NC_009832  2165117  2166508  1392  hypothetical protein  YP_001478210  normal  decreased coverage  0.00202926  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1980  CDS  NC_009832  2166554  2167957  1404  hypothetical protein  YP_001478211  normal  decreased coverage  0.00207336  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1981  CDS  NC_009832  2168023  2169180  1158  hypothetical protein  YP_001478212  normal  decreased coverage  0.00184616  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1989  CDS  NC_009832  2177050  2178312  1263  glutamyl-tRNA reductase  YP_001478220  hitchhiker  0.00499789  decreased coverage  0.00167683  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1990  CDS  NC_009832  2178346  2179431  1086  peptide chain release factor 1  YP_001478221  decreased coverage  0.00333479  decreased coverage  0.0018191  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_1991  CDS  NC_009832  2179431  2180261  831  N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase  YP_001478222  normal  0.166968  decreased coverage  0.00176531  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2114    NC_009832  2307621  2310252  2632      normal  decreased coverage  0.00012217  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2116  CDS  NC_009832  2310221  2311471  1251  PqiA family integral membrane protein  YP_001478345  normal  0.327223  decreased coverage  7.61316e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2122  CDS  NC_009832  2317924  2318715  792  IclR family transcriptional regulator  YP_001478351  hitchhiker  0.000124752  decreased coverage  0.000111832  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2123  CDS  NC_009832  2318847  2320238  1392  sodium:dicarboxylate symporter  YP_001478352  hitchhiker  0.00153943  decreased coverage  0.000144884  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2144  CDS  NC_009832  2339740  2341668  1929  threonyl-tRNA synthetase  YP_001478373  decreased coverage  0.000681025  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2333  CDS  NC_009832  2545643  2547247  1605  glucose-methanol-choline oxidoreductase  YP_001478562  decreased coverage  2.92297e-07  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2334  CDS  NC_009832  2547267  2547785  519  hypothetical protein  YP_001478563  decreased coverage  7.62456e-08  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2335  CDS  NC_009832  2547796  2549076  1281  gluconate 2-dehydrogenase (acceptor)  YP_001478564  decreased coverage  1.30755e-08  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2416  CDS  NC_009832  2645132  2646649  1518  TAP domain-containing protein  YP_001478645  decreased coverage  2.58971e-05  normal  0.152884  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2417  CDS  NC_009832  2646923  2647843  921  LysR family transcriptional regulator  YP_001478646  decreased coverage  1.94873e-05  normal  0.0826267  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2650  CDS  NC_009832  2917534  2918703  1170  tetratricopeptide repeat protein  YP_001478879  decreased coverage  1.74406e-08  unclonable  5.82873e-08  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2695  CDS  NC_009832  2966480  2967697  1218  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_001478924  decreased coverage  0.00163208  hitchhiker  0.00179201  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2706  CDS  NC_009832  2982697  2983104  408  global DNA-binding transcriptional dual regulator H-NS  YP_001478935  decreased coverage  1.60031e-07  hitchhiker  0.000198201  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2707  CDS  NC_009832  2983321  2984331  1011  NAD-dependent epimerase/dehydratase  YP_001478936  hitchhiker  0.000399652  decreased coverage  5.79035e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2708  CDS  NC_009832  2984341  2985684  1344  UDP-glucose 6-dehydrogenase  YP_001478937  normal  0.0287014  decreased coverage  6.51143e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2709  CDS  NC_009832  2985728  2986645  918  UTP--glucose-1-phosphate uridylyltransferase subunit GalU  YP_001478938  normal  0.0430379  decreased coverage  5.06097e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2725  CDS  NC_009832  3002244  3003524  1281  glycoside hydrolase family protein  YP_001478954  decreased coverage  0.00363291  hitchhiker  0.00148247  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2726  CDS  NC_009832  3003562  3003834  273  hypothetical protein  YP_001478955  decreased coverage  0.00110961  hitchhiker  0.000988908  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2744  CDS  NC_009832  3023095  3024288  1194  Bcr/CflA subfamily drug resistance transporter  YP_001478973  normal  decreased coverage  5.19122e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2745  CDS  NC_009832  3024292  3025365  1074  alanine racemase  YP_001478974  normal  decreased coverage  4.84932e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2746  CDS  NC_009832  3025438  3026742  1305  D-amino acid dehydrogenase small subunit  YP_001478975  normal  0.0984937  decreased coverage  6.03863e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2747  CDS  NC_009832  3027281  3028816  1536  SpoVR family protein  YP_001478976  hitchhiker  0.00597319  decreased coverage  5.64649e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2748  CDS  NC_009832  3028885  3029604  720  fatty acid metabolism regulator  YP_001478977  hitchhiker  0.000401699  decreased coverage  3.63622e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2773  CDS  NC_009832  3054106  3055071  966  high-affinity zinc transporter periplasmic component  YP_001479002  decreased coverage  6.94266e-06  hitchhiker  0.00715956  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2817  CDS  NC_009832  3098318  3098887  570  hypothetical protein  YP_001479046  normal  decreased coverage  1.9593e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2818  CDS  NC_009832  3098944  3100335  1392  major facilitator transporter  YP_001479047  normal  0.561944  decreased coverage  2.85964e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2819  CDS  NC_009832  3100465  3101202  738  ArsR family transcriptional regulator  YP_001479048  normal  0.0149863  decreased coverage  2.26835e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2820  CDS  NC_009832  3101199  3102020  822  23S rRNA methyltransferase A  YP_001479049  hitchhiker  0.00132792  decreased coverage  2.38774e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2821  CDS  NC_009832  3102165  3102881  717  hypothetical protein  YP_001479050  hitchhiker  9.17189e-06  decreased coverage  2.45077e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_2822  CDS  NC_009832  3102934  3103143  210  cold shock-like protein CspC  YP_001479051  decreased coverage  7.20852e-09  decreased coverage  1.9593e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3173  CDS  NC_009832  3491438  3494527  3090  beta-D-galactosidase  YP_001479401  decreased coverage  0.00462554  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3229  CDS  NC_009832  3560299  3561240  942  1-phosphofructokinase  YP_001479455  normal  decreased coverage  4.83919e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3230  CDS  NC_009832  3561237  3562370  1134  bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein  YP_001479456  normal  decreased coverage  4.11108e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3231  CDS  NC_009832  3562618  3563040  423  NUDIX hydrolase  YP_001479457  normal  decreased coverage  3.11334e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3232  CDS  NC_009832  3563298  3564458  1161  NapC/NirT cytochrome c domain-containing protein  YP_001479458  normal  decreased coverage  4.48194e-07  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3258  CDS  NC_009832  3594991  3595320  330  DNA-binding transcriptional activator OsmE  YP_001479484  decreased coverage  1.31774e-07  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3269  CDS  NC_009832  3608745  3611393  2649  DNA gyrase subunit A  YP_001479495  decreased coverage  0.00267185  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3334  CDS  NC_009832  3689453  3690274  822  tRNA pseudouridine synthase A  YP_001479560  decreased coverage  0.000208005  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3369  CDS  NC_009832  3729378  3731399  2022  5-methylaminomethyl-2-thiouridine methyltransferase  YP_001479595  decreased coverage  0.00235092  normal  Serratia proteamaculans 568  Bacteria 
 
 
-
 
Spro_3445  CDS  NC_009832  3815627  3816625  999  cell division protein ZipA  YP_001479671  unclonable  7.60929e-10  decreased coverage  3.14053e-05  Serratia proteamaculans 568  Bacteria 
 
 
-
 
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