205 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Sbal195_0025  CDS  NC_009997  29931  30239  -  309  ArsR family transcriptional regulator  YP_001552467  decreased coverage  0.00398711  normal  0.0110166  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0026  CDS  NC_009997  30440  30991  +  552  protoporphyrinogen oxidase  YP_001552468  decreased coverage  0.00716362  normal  0.0118461  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0068  CDS  NC_009997  79328  81724  +  2397  TonB-dependent receptor  YP_001552510  decreased coverage  0.00237309  hitchhiker  0.00396946  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0299  CDS  NC_009997  338196  340373  -  2178  TonB-dependent receptor  YP_001552741  decreased coverage  0.00020356  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0388  CDS  NC_009997  441386  442063  +  678  DNA repair protein RadC  YP_001552829  decreased coverage  0.00000131294  hitchhiker  0.0000732355  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0389  CDS  NC_009997  442185  442421  +  237  50S ribosomal protein L28  YP_001552830  decreased coverage  0.000000230782  hitchhiker  0.0000579861  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0417  CDS  NC_009997  475278  476465  +  1188  cell division protein FtsZ  YP_001552858  decreased coverage  0.00000886919  unclonable  0.00000557557  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0519  CDS  NC_009997  594431  595441  +  1011  rod shape-determining protein MreC  YP_001552957  decreased coverage  0.000295389  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0580  CDS  NC_009997  674202  675569  +  1368  major facilitator transporter  YP_001553018  decreased coverage  0.0000944901  normal  0.0306529  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0731  CDS  NC_009997  880658  881770  +  1113  AFG1 family ATPase  YP_001553169  decreased coverage  0.00000798254  normal  0.0124574  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0842  CDS  NC_009997  987772  988548  -  777  deoxyribonuclease I  YP_001553280  decreased coverage  0.00000267909  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0883  CDS  NC_009997  1044596  1045510  -  915  glutamate--tRNA ligase  YP_001553320  decreased coverage  0.00000349981  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0926  CDS  NC_009997  1091343  1092317  -  975  hypothetical protein  YP_001553362  decreased coverage  0.0000025555  normal  0.867259  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0970  CDS  NC_009997  1153012  1154418  +  1407  hypothetical protein  YP_001553406  decreased coverage  0.000021772  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1068  CDS  NC_009997  1267297  1268292  -  996  polyprenyl synthetase  YP_001553504  decreased coverage  0.00000253104  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1069  CDS  NC_009997  1268540  1268851  +  312  50S ribosomal protein L21  YP_001553505  decreased coverage  0.000000190707  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1081  CDS  NC_009997  1278428  1279732  -  1305  SurA domain-containing protein  YP_001553517  decreased coverage  0.00545123  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1108  CDS  NC_009997  1308922  1309485  +  564  GPR1/FUN34/yaaH family protein  YP_001553544  normal  1  decreased coverage  0.00215615  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1145  CDS  NC_009997  1356652  1357608  -  957  transaldolase B  YP_001553581  decreased coverage  0.000154463  normal  0.579932  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1150  CDS  NC_009997  1364424  1365830  -  1407  peptidase M28  YP_001553586  decreased coverage  0.0000117786  normal  0.22119  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1178  CDS  NC_009997  1397543  1398478  +  936  ATPase BadF/BadG/BcrA/BcrD type  YP_001553614  decreased coverage  0.000024561  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1199  CDS  NC_009997  1422454  1423554  +  1101  extracellular solute-binding protein  YP_001553634  decreased coverage  0.000384833  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1213  CDS  NC_009997  1440433  1443429  -  2997  TonB-dependent receptor plug  YP_001553648  decreased coverage  0.0027404  normal  0.164477  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1217  CDS  NC_009997  1448137  1449432  +  1296  glucose/galactose transporter  YP_001553652  decreased coverage  0.00556902  normal  0.207324  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1246  CDS  NC_009997  1482036  1483442  -  1407  peptidase M23B  YP_001553681  decreased coverage  0.00321659  normal  0.121883  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1276  CDS  NC_009997  1514290  1516080  +  1791  GTP-binding protein LepA  YP_001553711  decreased coverage  0.0000630436  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1299  CDS  NC_009997  1539831  1540523  +  693  cytochrome B561  YP_001553734  decreased coverage  0.00000118155  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1300  CDS  NC_009997  1540599  1541048  -  450  cytochrome c prime  YP_001553735  decreased coverage  0.000000571925  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1301  CDS  NC_009997  1541239  1541514  +  276  Trp operon repressor  YP_001553736  decreased coverage  0.000000284833  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1309  CDS  NC_009997  1550505  1553789  +  3285  peptidase S41  YP_001553744  decreased coverage  0.00413627  normal  0.677768  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1319  CDS  NC_009997  1568031  1568681  -  651  two component LuxR family transcriptional regulator  YP_001553754  normal  0.0542522  decreased coverage  0.000972679  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1320  CDS  NC_009997  1568711  1569874  -  1164  integral membrane sensor signal transduction histidine kinase  YP_001553755  normal  0.0173853  decreased coverage  0.000998378  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1379  CDS  NC_009997  1653048  1653668  +  621  heat shock protein GrpE  YP_001553813  decreased coverage  0.000000798826  normal  0.264016  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1398  CDS  NC_009997  1673216  1674772  -  1557  diguanylate cyclase  YP_001553832  normal  0.0531857  decreased coverage  0.00306238  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1399  CDS  NC_009997  1674924  1677086  -  2163  TPR repeat-containing protein  YP_001553833  normal  0.405164  decreased coverage  0.00313663  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1400  CDS  NC_009997  1677221  1679038  +  1818  peptidase M61 domain-containing protein  YP_001553834  normal  0.0529885  decreased coverage  0.00282724  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1405  CDS  NC_009997  1683850  1684821  +  972  phosphate binding protein  YP_001553839  decreased coverage  0.000717575  normal  0.051245  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1470  CDS  NC_009997  1770942  1771955  -  1014  hypothetical protein  YP_001553903  decreased coverage  0.00893038  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1491  CDS  NC_009997  1794155  1795180  +  1026  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001553924  decreased coverage  0.00000340035  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1492  CDS  NC_009997  1795212  1795676  +  465  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001553925  decreased coverage  0.000000642129  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1493  CDS  NC_009997  1795673  1796443  +  771  UDP-N-acetylglucosamine acyltransferase  YP_001553926  decreased coverage  0.00000143133  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1510  CDS  NC_009997  1821824  1822798  -  975  LysR family transcriptional regulator  YP_001553943  decreased coverage  0.000904227  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1520  CDS  NC_009997  1832146  1832853  +  708  hypothetical protein  YP_001553953  decreased coverage  0.00822925  normal  0.544828  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1521  CDS  NC_009997  1833421  1834065  +  645  outer membrane protein W  YP_001553954  decreased coverage  0.00262855  normal  0.530215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1601  CDS  NC_009997  1928931  1929323  -  393  hypothetical protein  YP_001554034  decreased coverage  0.000000459137  normal  0.222191  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1618  CDS  NC_009997  1954328  1956622  +  2295  ferrous iron transport protein B  YP_001554051  decreased coverage  0.00477082  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1694  CDS  NC_009997  2041358  2042821  -  1464  carbon starvation protein CstA  YP_001554127  decreased coverage  0.000103268  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1695  CDS  NC_009997  2043019  2043729  -  711  putative two-component response-regulatory protein YehT  YP_001554128  decreased coverage  0.00000884824  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1749  CDS  NC_009997  2095261  2096820  -  1560  sulphate transporter  YP_001554180  decreased coverage  0.0000311132  normal  0.348771  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1771  CDS  NC_009997  2123883  2124629  -  747  UMP phosphatase  YP_001554202  decreased coverage  0.00000884824  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1805  CDS  NC_009997  2166402  2168315  +  1914  arginine decarboxylase  YP_001554236  decreased coverage  0.0026532  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1822  CDS  NC_009997  2186701  2187792  +  1092  hypothetical protein  YP_001554253  decreased coverage  0.00000314938  normal  0.174335  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1841  CDS  NC_009997  2205081  2207312  +  2232  TonB-dependent receptor  YP_001554272  decreased coverage  0.000217461  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1875  CDS  NC_009997  2242235  2242927  -  693  two component transcriptional regulator  YP_001554306  decreased coverage  0.00450797  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1909  CDS  NC_009997  2278998  2279294  +  297  integration host factor subunit alpha  YP_001554340  decreased coverage  0.000003309  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1910  CDS  NC_009997  2279399  2280337  +  939  lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase  YP_001554341  decreased coverage  0.0000268439  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1927  CDS  NC_009997  2298146  2298805  +  660  two component transcriptional regulator  YP_001554358  decreased coverage  0.000341688  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1958  CDS  NC_009997  2343174  2344469  -  1296  integrase family protein  YP_001554389  decreased coverage  0.00797743  normal  0.0944215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1967  CDS  NC_009997  2348520  2349149  -  630  hypothetical protein  YP_001554398  decreased coverage  0.00372795  normal  0.0944215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1978  CDS  NC_009997  2355555  2356823  +  1269  integrase family protein  YP_001554409  decreased coverage  0.0000635719  normal  0.0552843  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1979  CDS  NC_009997  2356898  2357113  +  216  XRE family transcriptional regulator  YP_001554410  decreased coverage  0.000012505  normal  0.0449192  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1982  CDS  NC_009997  2360056  2362500  +  2445  metal dependent phosphohydrolase  YP_001554413  normal  0.0121434  decreased coverage  0.00400168  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1983  CDS  NC_009997  2362798  2364294  +  1497  hypothetical protein  YP_001554414  decreased coverage  0.000693336  normal  0.010097  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2029  CDS  NC_009997  2403412  2403627  +  216  XRE family transcriptional regulator  YP_001554459  decreased coverage  0.0082126  normal  0.318531  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2058  CDS  NC_009997  2447601  2449148  -  1548  MltD domain-containing protein  YP_001554488  hitchhiker  0.0000280518  decreased coverage  0.000141788  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2059  CDS  NC_009997  2449381  2450172  -  792  hydroxyacylglutathione hydrolase  YP_001554489  unclonable  0.000000134001  decreased coverage  0.000104727  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2060  CDS  NC_009997  2450327  2451064  +  738  methyltransferase type 11  YP_001554490  unclonable  0.000000118598  decreased coverage  0.0000900538  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2061  CDS  NC_009997  2451098  2452036  +  939  LysR family transcriptional regulator  YP_001554491  hitchhiker  0.00000270616  decreased coverage  0.000108776  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2062  CDS  NC_009997  2452206  2452676  -  471  ribonuclease H  YP_001554492  hitchhiker  0.0000221835  decreased coverage  0.0000999459  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2063  CDS  NC_009997  2452746  2453474  +  729  DNA polymerase III, epsilon subunit  YP_001554493  hitchhiker  0.0000471549  decreased coverage  0.000117497  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2104  CDS  NC_009997  2514271  2514681  -  411  lactoylglutathione lyase  YP_001554533  decreased coverage  0.00629536  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2120  CDS  NC_009997  2532057  2532683  +  627  hypothetical protein  YP_001554549  decreased coverage  0.00000120456  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2121  CDS  NC_009997  2532703  2533011  +  309  hypothetical protein  YP_001554550  decreased coverage  0.000000454716  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2122  CDS  NC_009997  2533102  2533323  +  222  hypothetical protein  YP_001554551  decreased coverage  0.00000026627  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2123  CDS  NC_009997  2533317  2533952  +  636  hypothetical protein  YP_001554552  decreased coverage  0.0000011259  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2158  CDS  NC_009997  2563999  2564760  +  762  DNA adenine methylase  YP_001554587  decreased coverage  0.0000173496  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2159  CDS  NC_009997  2565500  2567506  +  2007  excinuclease ABC subunit B  YP_001554588  decreased coverage  0.000173586  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2204  CDS  NC_009997  2618154  2619053  -  900  hypothetical protein  YP_001554633  decreased coverage  0.00000217456  normal  0.223194  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2205  CDS  NC_009997  2619257  2620690  +  1434  glyceraldehyde-3-phosphate dehydrogenase  YP_001554634  decreased coverage  0.00014327  normal  0.247333  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2206  CDS  NC_009997  2621789  2622982  +  1194  aromatic amino acid aminotransferase  YP_001554635  decreased coverage  0.0000624444  normal  0.252342  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2210  CDS  NC_009997  2626214  2627182  -  969  C32 tRNA thiolase  YP_001554639  decreased coverage  0.0000285606  normal  0.272334  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2220  CDS  NC_009997  2635025  2636461  -  1437  cbb3-type cytochrome c oxidase subunit I  YP_001554649  decreased coverage  0.00351736  normal  0.29399  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2221  CDS  NC_009997  2636687  2637172  +  486  hypothetical protein  YP_001554650  decreased coverage  0.000880424  normal  0.25123  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2229  CDS  NC_009997  2646346  2648349  -  2004  outer membrane protein  YP_001554658  decreased coverage  0.00516967  hitchhiker  0.0011455  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2230  CDS  NC_009997  2648364  2649293  -  930  cytochrome C family protein  YP_001554659  normal  0.0468166  decreased coverage  0.000802637  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2231  CDS  NC_009997  2649594  2650457  +  864  CRP/FNR family transcriptional regulator  YP_001554660  normal  0.0157613  decreased coverage  0.000748139  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2232  CDS  NC_009997  2651334  2651573  +  240  hypothetical protein  YP_001554661  hitchhiker  0.00239895  decreased coverage  0.000649711  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2233  CDS  NC_009997  2651977  2653338  -  1362  hypothetical protein  YP_001554662  normal  0.100569  decreased coverage  0.000158665  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2234  CDS  NC_009997  2653548  2654462  -  915  AAA ATPase  YP_001554663  normal  0.389055  decreased coverage  0.000860852  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2235  CDS  NC_009997  2654472  2656406  -  1935  integrase catalytic region  YP_001554664  normal  0.986822  decreased coverage  0.00107006  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2236  CDS  NC_009997  2656387  2657019  -  633  TnsA endonuclease  YP_001554665  normal  1  decreased coverage  0.000748139  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2237    NC_009997  2658083  2658339  +  257      normal  1  decreased coverage  0.000604669  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2238  CDS  NC_009997  2658417  2659874  +  1458  filamentation induced by cAMP protein Fic  YP_001554666  normal  0.76756  decreased coverage  0.000875847  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2239  CDS  NC_009997  2660784  2661167  +  384  hypothetical protein  YP_001554667  normal  1  decreased coverage  0.00059413  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2240  CDS  NC_009997  2661984  2663069  -  1086  transposase  YP_001554668  normal  1  decreased coverage  0.000696981  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2241  CDS  NC_009997  2663066  2663956  -  891  integrase family protein  YP_001554669  normal  1  decreased coverage  0.000667129  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2242  CDS  NC_009997  2664740  2666893  +  2154  hypothetical protein  YP_001554670  normal  1  decreased coverage  0.00103291  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2365  CDS  NC_009997  2788082  2788447  -  366  response regulator receiver protein  YP_001554793  decreased coverage  0.00457125  normal  1  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2404  CDS  NC_009997  2836736  2839486  -  2751  DNA gyrase, A subunit  YP_001554832  decreased coverage  0.00637691  unclonable  0.0000191603  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2419  CDS  NC_009997  2859387  2860391  -  1005  Holliday junction DNA helicase RuvB  YP_001554847  decreased coverage  0.0000499721  normal  0.0284883  Shewanella baltica OS195  Bacteria 
 
 
-
 
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