208 decreased-coverage genes were found for selected organism/s



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sbal195_0025  CDS  NC_009997  29931  30239  309  ArsR family transcriptional regulator  YP_001552467  decreased coverage  0.00398711  normal  0.0110166  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0026  CDS  NC_009997  30440  30991  552  protoporphyrinogen oxidase  YP_001552468  decreased coverage  0.00716362  normal  0.0118461  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0068  CDS  NC_009997  79328  81724  2397  TonB-dependent receptor  YP_001552510  decreased coverage  0.00237309  hitchhiker  0.00396946  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0299  CDS  NC_009997  338196  340373  2178  TonB-dependent receptor  YP_001552741  decreased coverage  0.00020356  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0388  CDS  NC_009997  441386  442063  678  DNA repair protein RadC  YP_001552829  decreased coverage  1.31294e-06  hitchhiker  7.32355e-05  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0389  CDS  NC_009997  442185  442421  237  50S ribosomal protein L28  YP_001552830  decreased coverage  2.30782e-07  hitchhiker  5.79861e-05  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0417  CDS  NC_009997  475278  476465  1188  cell division protein FtsZ  YP_001552858  decreased coverage  8.86919e-06  unclonable  5.57557e-06  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0519  CDS  NC_009997  594431  595441  1011  rod shape-determining protein MreC  YP_001552957  decreased coverage  0.000295389  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0580  CDS  NC_009997  674202  675569  1368  major facilitator transporter  YP_001553018  decreased coverage  9.44901e-05  normal  0.0306529  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0731  CDS  NC_009997  880658  881770  1113  AFG1 family ATPase  YP_001553169  decreased coverage  7.98254e-06  normal  0.0124574  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0842  CDS  NC_009997  987772  988548  777  deoxyribonuclease I  YP_001553280  decreased coverage  2.67909e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0883  CDS  NC_009997  1044596  1045510  915  glutamate--tRNA ligase  YP_001553320  decreased coverage  3.49981e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0926  CDS  NC_009997  1091343  1092317  975  hypothetical protein  YP_001553362  decreased coverage  2.5555e-06  normal  0.867259  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_0970  CDS  NC_009997  1153012  1154418  1407  hypothetical protein  YP_001553406  decreased coverage  2.1772e-05  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1068  CDS  NC_009997  1267297  1268292  996  polyprenyl synthetase  YP_001553504  decreased coverage  2.53104e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1069  CDS  NC_009997  1268540  1268851  312  50S ribosomal protein L21  YP_001553505  decreased coverage  1.90707e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1081  CDS  NC_009997  1278428  1279732  1305  SurA domain-containing protein  YP_001553517  decreased coverage  0.00545123  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1108  CDS  NC_009997  1308922  1309485  564  GPR1/FUN34/yaaH family protein  YP_001553544  normal  decreased coverage  0.00215615  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1145  CDS  NC_009997  1356652  1357608  957  transaldolase B  YP_001553581  decreased coverage  0.000154463  normal  0.579932  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1150  CDS  NC_009997  1364424  1365830  1407  peptidase M28  YP_001553586  decreased coverage  1.17786e-05  normal  0.22119  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1178  CDS  NC_009997  1397543  1398478  936  ATPase BadF/BadG/BcrA/BcrD type  YP_001553614  decreased coverage  2.4561e-05  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1199  CDS  NC_009997  1422454  1423554  1101  extracellular solute-binding protein  YP_001553634  decreased coverage  0.000384833  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1213  CDS  NC_009997  1440433  1443429  2997  TonB-dependent receptor plug  YP_001553648  decreased coverage  0.0027404  normal  0.164477  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1217  CDS  NC_009997  1448137  1449432  1296  glucose/galactose transporter  YP_001553652  decreased coverage  0.00556902  normal  0.207324  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1246  CDS  NC_009997  1482036  1483442  1407  peptidase M23B  YP_001553681  decreased coverage  0.00321659  normal  0.121883  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1276  CDS  NC_009997  1514290  1516080  1791  GTP-binding protein LepA  YP_001553711  decreased coverage  6.30436e-05  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1299  CDS  NC_009997  1539831  1540523  693  cytochrome B561  YP_001553734  decreased coverage  1.18155e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1300  CDS  NC_009997  1540599  1541048  450  cytochrome c prime  YP_001553735  decreased coverage  5.71925e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1301  CDS  NC_009997  1541239  1541514  276  Trp operon repressor  YP_001553736  decreased coverage  2.84833e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1309  CDS  NC_009997  1550505  1553789  3285  peptidase S41  YP_001553744  decreased coverage  0.00413627  normal  0.677768  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1319  CDS  NC_009997  1568031  1568681  651  two component LuxR family transcriptional regulator  YP_001553754  normal  0.0542522  decreased coverage  0.000972679  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1320  CDS  NC_009997  1568711  1569874  1164  integral membrane sensor signal transduction histidine kinase  YP_001553755  normal  0.0173853  decreased coverage  0.000998378  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1379  CDS  NC_009997  1653048  1653668  621  heat shock protein GrpE  YP_001553813  decreased coverage  7.98826e-07  normal  0.264016  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1398  CDS  NC_009997  1673216  1674772  1557  diguanylate cyclase  YP_001553832  normal  0.0531857  decreased coverage  0.00306238  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1399  CDS  NC_009997  1674924  1677086  2163  TPR repeat-containing protein  YP_001553833  normal  0.405164  decreased coverage  0.00313663  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1400  CDS  NC_009997  1677221  1679038  1818  peptidase M61 domain-containing protein  YP_001553834  normal  0.0529885  decreased coverage  0.00282724  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1405  CDS  NC_009997  1683850  1684821  972  phosphate binding protein  YP_001553839  decreased coverage  0.000717575  normal  0.051245  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1470  CDS  NC_009997  1770942  1771955  1014  hypothetical protein  YP_001553903  decreased coverage  0.00893038  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1491  CDS  NC_009997  1794155  1795180  1026  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001553924  decreased coverage  3.40035e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1492  CDS  NC_009997  1795212  1795676  465  (3R)-hydroxymyristoyl-ACP dehydratase  YP_001553925  decreased coverage  6.42129e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1493  CDS  NC_009997  1795673  1796443  771  UDP-N-acetylglucosamine acyltransferase  YP_001553926  decreased coverage  1.43133e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1510  CDS  NC_009997  1821824  1822798  975  LysR family transcriptional regulator  YP_001553943  decreased coverage  0.000904227  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1520  CDS  NC_009997  1832146  1832853  708  hypothetical protein  YP_001553953  decreased coverage  0.00822925  normal  0.544828  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1521  CDS  NC_009997  1833421  1834065  645  outer membrane protein W  YP_001553954  decreased coverage  0.00262855  normal  0.530215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1601  CDS  NC_009997  1928931  1929323  393  hypothetical protein  YP_001554034  decreased coverage  4.59137e-07  normal  0.222191  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1618  CDS  NC_009997  1954328  1956622  2295  ferrous iron transport protein B  YP_001554051  decreased coverage  0.00477082  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1694  CDS  NC_009997  2041358  2042821  1464  carbon starvation protein CstA  YP_001554127  decreased coverage  0.000103268  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1695  CDS  NC_009997  2043019  2043729  711  putative two-component response-regulatory protein YehT  YP_001554128  decreased coverage  8.84824e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1749  CDS  NC_009997  2095261  2096820  1560  sulphate transporter  YP_001554180  decreased coverage  3.11132e-05  normal  0.348771  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1771  CDS  NC_009997  2123883  2124629  747  UMP phosphatase  YP_001554202  decreased coverage  8.84824e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1805  CDS  NC_009997  2166402  2168315  1914  arginine decarboxylase  YP_001554236  decreased coverage  0.0026532  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1822  CDS  NC_009997  2186701  2187792  1092  hypothetical protein  YP_001554253  decreased coverage  3.14938e-06  normal  0.174335  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1841  CDS  NC_009997  2205081  2207312  2232  TonB-dependent receptor  YP_001554272  decreased coverage  0.000217461  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1875  CDS  NC_009997  2242235  2242927  693  two component transcriptional regulator  YP_001554306  decreased coverage  0.00450797  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1909  CDS  NC_009997  2278998  2279294  297  integration host factor subunit alpha  YP_001554340  decreased coverage  3.309e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1910  CDS  NC_009997  2279399  2280337  939  lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase  YP_001554341  decreased coverage  2.68439e-05  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1927  CDS  NC_009997  2298146  2298805  660  two component transcriptional regulator  YP_001554358  decreased coverage  0.000341688  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1958  CDS  NC_009997  2343174  2344469  1296  integrase family protein  YP_001554389  decreased coverage  0.00797743  normal  0.0944215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1967  CDS  NC_009997  2348520  2349149  630  hypothetical protein  YP_001554398  decreased coverage  0.00372795  normal  0.0944215  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1978  CDS  NC_009997  2355555  2356823  1269  integrase family protein  YP_001554409  decreased coverage  6.35719e-05  normal  0.0552843  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1979  CDS  NC_009997  2356898  2357113  216  XRE family transcriptional regulator  YP_001554410  decreased coverage  1.2505e-05  normal  0.0449192  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1982  CDS  NC_009997  2360056  2362500  2445  metal dependent phosphohydrolase  YP_001554413  normal  0.0121434  decreased coverage  0.00400168  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_1983  CDS  NC_009997  2362798  2364294  1497  hypothetical protein  YP_001554414  decreased coverage  0.000693336  normal  0.010097  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2029  CDS  NC_009997  2403412  2403627  216  XRE family transcriptional regulator  YP_001554459  decreased coverage  0.0082126  normal  0.318531  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2058  CDS  NC_009997  2447601  2449148  1548  MltD domain-containing protein  YP_001554488  hitchhiker  2.80518e-05  decreased coverage  0.000141788  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2059  CDS  NC_009997  2449381  2450172  792  hydroxyacylglutathione hydrolase  YP_001554489  unclonable  1.34001e-07  decreased coverage  0.000104727  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2060  CDS  NC_009997  2450327  2451064  738  methyltransferase type 11  YP_001554490  unclonable  1.18598e-07  decreased coverage  9.00538e-05  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2061  CDS  NC_009997  2451098  2452036  939  LysR family transcriptional regulator  YP_001554491  hitchhiker  2.70616e-06  decreased coverage  0.000108776  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2062  CDS  NC_009997  2452206  2452676  471  ribonuclease H  YP_001554492  hitchhiker  2.21835e-05  decreased coverage  9.99459e-05  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2063  CDS  NC_009997  2452746  2453474  729  DNA polymerase III, epsilon subunit  YP_001554493  hitchhiker  4.71549e-05  decreased coverage  0.000117497  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2104  CDS  NC_009997  2514271  2514681  411  lactoylglutathione lyase  YP_001554533  decreased coverage  0.00629536  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2120  CDS  NC_009997  2532057  2532683  627  hypothetical protein  YP_001554549  decreased coverage  1.20456e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2121  CDS  NC_009997  2532703  2533011  309  hypothetical protein  YP_001554550  decreased coverage  4.54716e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2122  CDS  NC_009997  2533102  2533323  222  hypothetical protein  YP_001554551  decreased coverage  2.6627e-07  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2123  CDS  NC_009997  2533317  2533952  636  hypothetical protein  YP_001554552  decreased coverage  1.1259e-06  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2158  CDS  NC_009997  2563999  2564760  762  DNA adenine methylase  YP_001554587  decreased coverage  1.73496e-05  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2159  CDS  NC_009997  2565500  2567506  2007  excinuclease ABC subunit B  YP_001554588  decreased coverage  0.000173586  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2204  CDS  NC_009997  2618154  2619053  900  hypothetical protein  YP_001554633  decreased coverage  2.17456e-06  normal  0.223194  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2205  CDS  NC_009997  2619257  2620690  1434  glyceraldehyde-3-phosphate dehydrogenase  YP_001554634  decreased coverage  0.00014327  normal  0.247333  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2206  CDS  NC_009997  2621789  2622982  1194  aromatic amino acid aminotransferase  YP_001554635  decreased coverage  6.24444e-05  normal  0.252342  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2210  CDS  NC_009997  2626214  2627182  969  C32 tRNA thiolase  YP_001554639  decreased coverage  2.85606e-05  normal  0.272334  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2220  CDS  NC_009997  2635025  2636461  1437  cbb3-type cytochrome c oxidase subunit I  YP_001554649  decreased coverage  0.00351736  normal  0.29399  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2221  CDS  NC_009997  2636687  2637172  486  hypothetical protein  YP_001554650  decreased coverage  0.000880424  normal  0.25123  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2229  CDS  NC_009997  2646346  2648349  2004  outer membrane protein  YP_001554658  decreased coverage  0.00516967  hitchhiker  0.0011455  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2230  CDS  NC_009997  2648364  2649293  930  cytochrome C family protein  YP_001554659  normal  0.0468166  decreased coverage  0.000802637  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2231  CDS  NC_009997  2649594  2650457  864  CRP/FNR family transcriptional regulator  YP_001554660  normal  0.0157613  decreased coverage  0.000748139  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2232  CDS  NC_009997  2651334  2651573  240  hypothetical protein  YP_001554661  hitchhiker  0.00239895  decreased coverage  0.000649711  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2233  CDS  NC_009997  2651977  2653338  1362  hypothetical protein  YP_001554662  normal  0.100569  decreased coverage  0.000158665  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2234  CDS  NC_009997  2653548  2654462  915  AAA ATPase  YP_001554663  normal  0.389055  decreased coverage  0.000860852  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2235  CDS  NC_009997  2654472  2656406  1935  integrase catalytic region  YP_001554664  normal  0.986822  decreased coverage  0.00107006  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2236  CDS  NC_009997  2656387  2657019  633  TnsA endonuclease  YP_001554665  normal  decreased coverage  0.000748139  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2237    NC_009997  2658083  2658339  257      normal  decreased coverage  0.000604669  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2238  CDS  NC_009997  2658417  2659874  1458  filamentation induced by cAMP protein Fic  YP_001554666  normal  0.76756  decreased coverage  0.000875847  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2239  CDS  NC_009997  2660784  2661167  384  hypothetical protein  YP_001554667  normal  decreased coverage  0.00059413  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2240  CDS  NC_009997  2661984  2663069  1086  transposase  YP_001554668  normal  decreased coverage  0.000696981  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2241  CDS  NC_009997  2663066  2663956  891  integrase family protein  YP_001554669  normal  decreased coverage  0.000667129  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2242  CDS  NC_009997  2664740  2666893  2154  hypothetical protein  YP_001554670  normal  decreased coverage  0.00103291  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2365  CDS  NC_009997  2788082  2788447  366  response regulator receiver protein  YP_001554793  decreased coverage  0.00457125  normal  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2404  CDS  NC_009997  2836736  2839486  2751  DNA gyrase, A subunit  YP_001554832  decreased coverage  0.00637691  unclonable  1.91603e-05  Shewanella baltica OS195  Bacteria 
 
 
-
 
Sbal195_2419  CDS  NC_009997  2859387  2860391  1005  Holliday junction DNA helicase RuvB  YP_001554847  decreased coverage  4.99721e-05  normal  0.0284883  Shewanella baltica OS195  Bacteria 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>