96 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Glov_0001  CDS  NC_010814  261  1640  1380  chromosomal replication initiation protein  YP_001950260  decreased coverage  3.86226e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0015  CDS  NC_010814  16415  16651  237  hypothetical protein  YP_001950273  decreased coverage  2.46849e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0339  CDS  NC_010814  310701  311321  621  SNARE associated Golgi protein  YP_001950587  decreased coverage  2.82866e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0366  CDS  NC_010814  339873  340187  315  hypothetical protein  YP_001950614  decreased coverage  3.56644e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0367  CDS  NC_010814  340321  340914  594  recombination protein RecR  YP_001950615  decreased coverage  1.04569e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0383  CDS  NC_010814  356542  357678  1137  protein of unknown function DUF185  YP_001950631  decreased coverage  0.000105312  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0384  CDS  NC_010814  357675  358355  681  Haloacid dehalogenase domain protein hydrolase  YP_001950632  decreased coverage  0.000618634  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0428  CDS  NC_010814  405274  406401  1128  hypothetical protein  YP_001950676  decreased coverage  2.32153e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0429  CDS  NC_010814  406437  406733  297  hypothetical protein  YP_001950677  decreased coverage  7.27417e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0475  CDS  NC_010814  450276  450872  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001950723  decreased coverage  1.99876e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0500  CDS  NC_010814  475651  476823  1173  hypothetical protein  YP_001950748  decreased coverage  1.57411e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0508  CDS  NC_010814  482698  483552  855  Methenyltetrahydrofolate cyclohydrolase  YP_001950756  decreased coverage  3.47177e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0509  CDS  NC_010814  483781  484002  222  regulatory protein, FmdB family  YP_001950757  decreased coverage  2.4131e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0628  CDS  NC_010814  629523  629762  240  hypothetical protein  YP_001950874  decreased coverage  3.74904e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0629  CDS  NC_010814  629905  630597  693  transcriptional regulator, Crp/Fnr family  YP_001950875  decreased coverage  2.85446e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0758  CDS  NC_010814  777835  779097  1263  lipoprotein releasing system, transmembrane protein, LolC/E family  YP_001951004  decreased coverage  0.00020569  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0826  CDS  NC_010814  847712  848527  816  tol-pal system protein YbgF  YP_001951071  decreased coverage  5.23116e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0827  CDS  NC_010814  848722  850764  2043  membrane-bound proton-translocating pyrophosphatase  YP_001951072  decreased coverage  0.000434939  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0839  CDS  NC_010814  859471  860553  1083  transposase IS4 family protein  YP_001951083  decreased coverage  7.87198e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0883  CDS  NC_010814  910741  911670  930  hypothetical protein  YP_001951127  decreased coverage  0.00462477  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_0885  CDS  NC_010814  912782  913519  738  IstB domain protein ATP-binding protein  YP_001951128  decreased coverage  0.00199941  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1009  CDS  NC_010814  1047919  1049088  1170  hypothetical protein  YP_001951252  decreased coverage  0.000550438  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1026  CDS  NC_010814  1067485  1067685  201  50S ribosomal protein L31  YP_001951269  decreased coverage  0.000398278  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1027  CDS  NC_010814  1067875  1068567  693  FAD-dependent thymidylate synthase  YP_001951270  decreased coverage  0.00194248  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1173  CDS  NC_010814  1226769  1227050  282  hypothetical protein  YP_001951415  decreased coverage  5.11675e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1174  CDS  NC_010814  1227079  1227414  336  hypothetical protein  YP_001951416  decreased coverage  5.61092e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1175  CDS  NC_010814  1227474  1228943  1470  outer membrane porin FmdC, putative  YP_001951417  decreased coverage  0.000392921  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1242  CDS  NC_010814  1290404  1291255  852  Sec-independent protein translocase, TatC subunit  YP_001951484  decreased coverage  0.00016128  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1253  CDS  NC_010814  1301386  1302495  1110  hypothetical protein  YP_001951495  decreased coverage  0.000111033  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1263  CDS  NC_010814  1312443  1313354  912  ROK family protein  YP_001951505  decreased coverage  1.16273e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1264  CDS  NC_010814  1313464  1314672  1209  S-layer domain protein  YP_001951506  decreased coverage  2.48204e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1358  CDS  NC_010814  1400732  1401271  540  50S ribosomal protein L5  YP_001951599  decreased coverage  7.13607e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1359  CDS  NC_010814  1401284  1401469  186  30S ribosomal protein S14  YP_001951600  decreased coverage  2.05599e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1360  CDS  NC_010814  1401500  1401898  399  30S ribosomal protein S8  YP_001951601  decreased coverage  3.5487e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1375  CDS  NC_010814  1409979  1410431  453  hypothetical protein  YP_001951616  decreased coverage  0.00361251  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1376  CDS  NC_010814  1410561  1412774  2214  multi-sensor signal transduction histidine kinase  YP_001951617  decreased coverage  0.00550904  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1385  CDS  NC_010814  1421994  1422470  477  cyclase/dehydrase  YP_001951626  decreased coverage  1.1932e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1386  CDS  NC_010814  1422448  1422708  261  hypothetical protein  YP_001951627  decreased coverage  4.10347e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1397  CDS  NC_010814  1436458  1438455  1998  SSS sodium solute transporter superfamily  YP_001951638  decreased coverage  0.000364072  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1413  CDS  NC_010814  1458453  1458947  495  hypothetical protein  YP_001951654  decreased coverage  7.21911e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1414  CDS  NC_010814  1458977  1460320  1344  restriction modification system DNA specificity domain  YP_001951655  decreased coverage  0.00014984  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1455  CDS  NC_010814  1510424  1513420  2997  M6 family metalloprotease domain protein  YP_001951694  decreased coverage  0.00413675  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1543  CDS  NC_010814  1630143  1631384  1242  glucose-1-phosphate adenylyltransferase  YP_001951779  decreased coverage  0.00354872  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1636  CDS  NC_010814  1742492  1743868  1377  hypothetical protein  YP_001951872  decreased coverage  0.00167198  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1678  CDS  NC_010814  1789889  1790257  369  hypothetical protein  YP_001951914  decreased coverage  4.30013e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1711  CDS  NC_010814  1816342  1816809  468  hypothetical protein  YP_001951947  decreased coverage  1.95986e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1712  CDS  NC_010814  1816800  1817069  270  hypothetical protein  YP_001951948  decreased coverage  6.48384e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1755  CDS  NC_010814  1865938  1866735  798  TPR repeat-containing protein  YP_001951991  decreased coverage  4.4478e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1769  CDS  NC_010814  1884071  1884565  495  phosphopantetheine adenylyltransferase  YP_001952005  decreased coverage  0.0050342  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1770  CDS  NC_010814  1884555  1885124  570  methyltransferase  YP_001952006  decreased coverage  0.00583813  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1793  CDS  NC_010814  1907498  1908208  711  hypothetical protein  YP_001952029  decreased coverage  4.75363e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1794  CDS  NC_010814  1908299  1908805  507  Rubrerythrin  YP_001952030  decreased coverage  2.01822e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1823  CDS  NC_010814  1943778  1944452  675  Tripartite ATP-independent periplasmic transporter DctQ component  YP_001952059  decreased coverage  4.04138e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1824  CDS  NC_010814  1944529  1945524  996  TRAP dicarboxylate transporter, DctP subunit  YP_001952060  decreased coverage  1.27835e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1829  CDS  NC_010814  1950291  1952810  2520  integral membrane sensor signal transduction histidine kinase  YP_001952065  decreased coverage  0.00645827  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1855  CDS  NC_010814  1976299  1976970  672  ABC-type transport system involved in resistance to organic solvents ATPase component-like protein  YP_001952091  decreased coverage  1.95986e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1856  CDS  NC_010814  1977189  1978964  1776  indolepyruvate ferredoxin oxidoreductase, alpha subunit  YP_001952092  decreased coverage  0.0012432  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1897  CDS  NC_010814  2022130  2022609  480  hypothetical protein  YP_001952133  decreased coverage  0.00778692  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1898  CDS  NC_010814  2022634  2022828  195  hypothetical protein  YP_001952134  decreased coverage  0.00913701  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1911  CDS  NC_010814  2037065  2038198  1134  lipoprotein, putative  YP_001952147  decreased coverage  1.24233e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1912  CDS  NC_010814  2038375  2038593  219  translation initiation factor IF-1  YP_001952148  decreased coverage  2.11647e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1913  CDS  NC_010814  2038697  2039260  564  elongation factor P  YP_001952149  decreased coverage  6.6721e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1914  CDS  NC_010814  2039265  2040173  909  tRNA synthetase class II (D K and N)  YP_001952150  decreased coverage  3.71414e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1915  CDS  NC_010814  2040140  2041504  1365  exodeoxyribonuclease VII large subunit  YP_001952151  decreased coverage  1.69842e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_1993  CDS  NC_010814  2119028  2120806  1779  oligoendopeptidase, pepF/M3 family  YP_001952229  decreased coverage  0.000167694  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2213  CDS  NC_010814  2361706  2363622  1917  succinate dehydrogenase flavoprotein subunit  YP_001952449  decreased coverage  0.00041911  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2233  CDS  NC_010814  2382488  2384542  2055  squalene-hopene cyclase  YP_001952469  decreased coverage  0.000414929  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2464  CDS  NC_010814  2632409  2633608  1200  cofactor-independent phosphoglycerate mutase  YP_001952698  decreased coverage  0.00281274  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2513  CDS  NC_010814  2687710  2688792  1083  transposase IS4 family protein  YP_001952747  decreased coverage  1.27835e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2521  CDS  NC_010814  2695067  2696497  1431  tRNA(Ile)-lysidine synthetase  YP_001952755  decreased coverage  3.32242e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2601  CDS  NC_010814  2786937  2787566  630  hypothetical protein  YP_001952834  decreased coverage  3.15726e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2638  CDS  NC_010814  2828192  2829271  1080  branched-chain amino acid aminotransferase  YP_001952871  decreased coverage  0.000340961  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2694  CDS  NC_010814  2895850  2896932  1083  transposase IS4 family protein  YP_001952927  decreased coverage  0.00558684  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2740  CDS  NC_010814  2940456  2941463  1008  PpiC-type peptidyl-prolyl cis-trans isomerase  YP_001952973  decreased coverage  9.34934e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2789  CDS  NC_010814  2998375  2998641  267  twin-arginine translocation protein, TatA/E family subunit  YP_001953022  decreased coverage  4.47102e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2829  CDS  NC_010814  3042534  3044453  1920  molecular chaperone DnaK  YP_001953062  decreased coverage  0.000221772  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2950  CDS  NC_010814  3163208  3164536  1329  hypothetical protein  YP_001953177  decreased coverage  0.000964645  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2995  CDS  NC_010814  3214396  3215391  996  quinone oxidoreductase, YhdH/YhfP family  YP_001953221  decreased coverage  0.00123098  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_2996  CDS  NC_010814  3215471  3215629  159  hypothetical protein  YP_001953222  decreased coverage  8.34169e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3059  CDS  NC_010814  3276663  3278150  1488  protein of unknown function DUF344  YP_001953285  decreased coverage  5.57156e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3087  CDS  NC_010814  3309620  3309766  147  hypothetical protein  YP_001953313  decreased coverage  2.7911e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3088  CDS  NC_010814  3309812  3309964  153  hypothetical protein  YP_001953314  decreased coverage  2.81699e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3108  CDS  NC_010814  3328063  3328254  192  hypothetical protein  YP_001953334  decreased coverage  0.00106791  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3168  CDS  NC_010814  3388319  3389254  936  conserved hypothetical radical SAM protein  YP_001953394  decreased coverage  0.000379648  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3208  CDS  NC_010814  3429786  3430442  657  transcriptional regulator, TraR/DksA family  YP_001953434  decreased coverage  1.45805e-05  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3443  CDS  NC_010814  3702776  3703606  831  ABC transporter, substrate-binding protein, putative  YP_001953667  decreased coverage  2.76268e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3459  CDS  NC_010814  3720229  3720570  342  cytochrome c family protein, putative  YP_001953682  decreased coverage  5.67709e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3468  CDS  NC_010814  3729213  3730559  1347  outer membrane efflux protein  YP_001953691  decreased coverage  0.000163735  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3496  CDS  NC_010814  3755849  3756877  1029  signal recognition particle-docking protein FtsY  YP_001953719  decreased coverage  9.89715e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3497  CDS  NC_010814  3756900  3757145  246  hypothetical protein  YP_001953720  decreased coverage  3.41495e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3498  CDS  NC_010814  3757149  3757427  279  hypothetical protein  YP_001953721  decreased coverage  3.38094e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3540  CDS  NC_010814  3808046  3809374  1329  anaerobic C4-dicarboxylate transporter  YP_001953761  decreased coverage  0.000247021  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3549  CDS  NC_010814  3818160  3819341  1182  methyl-accepting chemotaxis sensory transducer  YP_001953770  decreased coverage  8.18802e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3630  CDS  NC_010814  3904120  3904581  462  protein of unknown function DUF163  YP_001953850  decreased coverage  1.33759e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3631  CDS  NC_010814  3904594  3905010  417  iojap-like protein  YP_001953851  decreased coverage  9.86152e-07  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
Glov_3632  CDS  NC_010814  3905007  3905648  642  nicotinate (nicotinamide) nucleotide adenylyltransferase  YP_001953852  decreased coverage  3.25022e-06  n/a    Geobacter lovleyi SZ  Bacteria 
 
 
-
 
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