55 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Dshi_0048  CDS  NC_009952  47483  48445  963  putative transposase  YP_001531398  normal  decreased coverage  1.22957e-12  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0049  CDS  NC_009952  48547  48753  207  hypothetical protein  YP_001531399  normal  decreased coverage  5.93849e-13  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0087  CDS  NC_009952  86213  86545  333  iojap-like protein  YP_001531437  decreased coverage  0.00113012  normal  0.300811  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0337  CDS  NC_009952  325428  326237  810  chromosome partitioning ATPase protein-like protein  YP_001531687  decreased coverage  0.00565629  normal  0.707159  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0444  CDS  NC_009952  433725  434012  288  hypothetical protein  YP_001531793  decreased coverage  0.00689479  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0445  CDS  NC_009952  434046  434438  393  hypothetical protein  YP_001531794  decreased coverage  0.00422073  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0447  CDS  NC_009952  434981  435769  789  transcriptional regulator  YP_001531796  decreased coverage  0.00494896  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_0786  CDS  NC_009952  791654  792166  513  transcriptional regulator  YP_001532132  decreased coverage  0.000100342  normal  0.0526342  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_0852  CDS  NC_009952  863045  864853  1809  lipid A ABC exporter family  YP_001532198  decreased coverage  0.00564413  normal  0.170216  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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Dshi_0998  CDS  NC_009952  1030013  1031707  1695  adenine deaminase  YP_001532341  decreased coverage  0.00442285  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1018  CDS  NC_009952  1053428  1053700  273  hypothetical protein  YP_001532361  decreased coverage  0.00231491  normal  0.683012  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1043  CDS  NC_009952  1076851  1077846  996  TRAP dicarboxylate transporter- DctP subunit  YP_001532386  decreased coverage  0.000669152  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1110  CDS  NC_009952  1134607  1135662  1056  hypothetical protein  YP_001532453  decreased coverage  0.00592448  normal  0.281955  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1111  CDS  NC_009952  1135659  1136999  1341  translocation protein TolB  YP_001532454  decreased coverage  0.00131159  normal  0.386204  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1166  CDS  NC_009952  1195258  1196730  1473  GTP-binding protein EngA  YP_001532509  decreased coverage  0.000230797  normal  0.345653  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1179  CDS  NC_009952  1210889  1214206  3318  hypothetical protein  YP_001532522  decreased coverage  0.00453923  normal  0.431932  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1311  CDS  NC_009952  1363417  1364631  1215  NADH dehydrogenase subunit D  YP_001532654  decreased coverage  0.00990981  normal  0.0474356  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1319  CDS  NC_009952  1369561  1370079  519  hypothetical protein  YP_001532662  normal  0.314854  decreased coverage  0.00847169  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1393  CDS  NC_009952  1445608  1446195  588  hypothetical protein  YP_001532736  decreased coverage  0.00750725  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1562  CDS  NC_009952  1626290  1626820  531  hypothetical protein  YP_001532905  decreased coverage  0.000177224  normal  0.0964929  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1643  CDS  NC_009952  1704693  1705760  1068  recombinase A  YP_001532986  normal  0.883064  decreased coverage  6.02005e-12  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1644  CDS  NC_009952  1705935  1708274  2340  histidine kinase  YP_001532987  normal  decreased coverage  2.28151e-11  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1687  CDS  NC_009952  1756672  1757268  597  putative HNH endonuclease  YP_001533030  decreased coverage  0.00321972  normal  0.0401015  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1688  CDS  NC_009952  1757458  1758129  672  putative phospholipase / carboxylesterase  YP_001533031  decreased coverage  0.00377416  normal  0.0415953  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1701  CDS  NC_009952  1770402  1771202  801  putative high-affinity zinc uptake system membrane protein  YP_001533044  decreased coverage  0.000503505  normal  0.0364016  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1702  CDS  NC_009952  1771199  1771942  744  zinc import ATP-binding protein  YP_001533045  decreased coverage  0.00101285  normal  0.0355653  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1797  CDS  NC_009952  1868767  1870593  1827  hypothetical protein  YP_001533140  decreased coverage  4.79521e-05  normal  0.132264  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1820  CDS  NC_009952  1898151  1898933  783  mannosyl-3-phosphoglycerate phosphatase  YP_001533163  decreased coverage  0.00552439  normal  0.470118  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1888  CDS  NC_009952  1965637  1966230  594  phosphoribosylglycinamide formyltransferase  YP_001533231  decreased coverage  0.00391405  normal  0.23878  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1950  CDS  NC_009952  2041261  2041860  600  hypothetical protein  YP_001533292  decreased coverage  0.000104979  hitchhiker  7.70868e-05  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1956  CDS  NC_009952  2049974  2050936  963  putative NAD-dependent epimerase/dehydratase  YP_001533298  decreased coverage  0.000864089  hitchhiker  0.00126231  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1957  CDS  NC_009952  2051005  2052432  1428  hypothetical protein  YP_001533299  decreased coverage  0.00211883  hitchhiker  0.00150316  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_1995  CDS  NC_009952  2113662  2114381  720  hypothetical protein  YP_001533335  decreased coverage  0.00112898  normal  0.836416  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2012  CDS  NC_009952  2131292  2132107  816  putative ABC transporter inner membrane component  YP_001533352  normal  0.100736  decreased coverage  0.00339933  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2208  CDS  NC_009952  2333780  2335267  1488  putative D-alanyl-D-alanine carboxypeptidase/endopeptidase  YP_001533545  decreased coverage  0.00369508  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2416  CDS  NC_009952  2555094  2556689  1596  cell division protein FtsZ  YP_001533751  decreased coverage  1.47556e-08  normal  0.595095  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2565  CDS  NC_009952  2730319  2730960  642  response regulator protein  YP_001533899  decreased coverage  1.40338e-11  decreased coverage  1.64026e-15  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2674  CDS  NC_009952  2830905  2831591  687  two component transcriptional regulator  YP_001534008  decreased coverage  0.00219271  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2758  CDS  NC_009952  2919558  2920268  711  transcriptional regulator  YP_001534092  normal  decreased coverage  0.00797611  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2840  CDS  NC_009952  2997915  2998571  657  peptidase M22  YP_001534174  decreased coverage  0.000908418  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2841  CDS  NC_009952  2998568  2998987  420  putative ribosomal-protein-alanine acetyltransferase  YP_001534175  decreased coverage  0.000949861  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2890  CDS  NC_009952  3046511  3046822  312  hypothetical protein  YP_001534224  decreased coverage  0.000199627  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2891  CDS  NC_009952  3046819  3047547  729  3-ketoacyl-(acyl-carrier-protein) reductase  YP_001534225  decreased coverage  0.000353377  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_2949  CDS  NC_009952  3109029  3111326  2298  putative Vitamin B12-dependent ribonucleotide reductase  YP_001534283  normal  decreased coverage  0.00955068  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3081  CDS  NC_009952  3248865  3252272  3408  efflux transporter  YP_001534415  decreased coverage  0.00863053  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3149  CDS  NC_009952  3315173  3315985  813  putative D-alanyl-d-alanine dipeptidase  YP_001534483  decreased coverage  0.00328956  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3655  CDS  NC_009955  55361  57364  2004  TRAG family protein  YP_001541869  normal  0.291322  decreased coverage  2.44512e-06  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3656  CDS  NC_009955  57373  59706  2334  relaxase/mobilization nuclease family protein  YP_001541870  normal  0.0486452  decreased coverage  3.02342e-07  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3657  CDS  NC_009955  59693  60274  582  transposase IS3/IS911 family protein  YP_001541871  normal  0.0299536  decreased coverage  1.14659e-06  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3658  CDS  NC_009955  60838  61044  207  hypothetical protein  YP_001541872  normal  0.0865494  decreased coverage  9.14717e-07  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3659  CDS  NC_009955  61245  61547  303  hypothetical protein  YP_001541873  normal  0.105991  decreased coverage  9.83343e-07  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3660  CDS  NC_009955  61583  62512  930  hypothetical protein  YP_001541874  normal  0.0855564  decreased coverage  1.45048e-06  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3661  CDS  NC_009955  63298  64170  873  integrase family protein  YP_001541875  normal  0.311976  decreased coverage  1.49049e-06  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_3858  CDS  NC_009956  66007  68247  2241  protein of unknown function DUF940 membrane lipoprotein putative  YP_001542067  decreased coverage  0.00089637  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
-
 
Dshi_4118  CDS  NC_009958  49744  50616  873  glucose-1-phosphate thymidylyltransferase  YP_001542316  decreased coverage  0.00952178  normal  Dinoroseobacter shibae DFL 12  Bacteria 
 
 
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