118 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Spea_0137  CDS  NC_009901  152488  154326  1839  peptidase M14 carboxypeptidase A  YP_001500001  decreased coverage  0.000376748  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0182  CDS  NC_009901  208877  210061  1185  elongation factor Tu  YP_001500046  decreased coverage  3.66988e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0221  CDS  NC_009901  233942  234538  597  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001500084  decreased coverage  1.03908e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0334  CDS  NC_009901  376866  378122  1257  histidine kinase  YP_001500197  decreased coverage  0.000559138  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0335  CDS  NC_009901  378094  378762  669  two component transcriptional regulator  YP_001500198  decreased coverage  1.8466e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0389  CDS  NC_009901  471188  471493  306  DNA-binding protein Fis  YP_001500252  decreased coverage  1.31756e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0421  CDS  NC_009901  516799  518226  1428  dihydrolipoamide dehydrogenase  YP_001500284  decreased coverage  0.000187748  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0527  CDS  NC_009901  643519  644862  1344  glutamate dehydrogenase  YP_001500390  decreased coverage  7.36482e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0534  CDS  NC_009901  657864  658310  447  3-dehydroquinate dehydratase  YP_001500397  decreased coverage  2.93709e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0571  CDS  NC_009901  701847  702515  669  single-strand binding protein  YP_001500434  decreased coverage  4.99632e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0589  CDS  NC_009901  722699  723733  1035  porin  YP_001500452  decreased coverage  4.86852e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0735  CDS  NC_009901  912895  914265  1371  aspartate kinase III  YP_001500597  decreased coverage  0.000266355  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0788  CDS  NC_009901  974163  976154  1992  transketolase  YP_001500650  decreased coverage  5.27477e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0830  CDS  NC_009901  1028876  1030588  1713  nitrate/nitrite sensor protein NarQ  YP_001500692  decreased coverage  0.00637063  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0838  CDS  NC_009901  1038648  1038764  117  hypothetical protein  YP_001500700  decreased coverage  6.30457e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0853  CDS  NC_009901  1052566  1052820  255  50S ribosomal protein L27  YP_001500715  decreased coverage  1.52445e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0872  CDS  NC_009901  1071648  1072067  420  hypothetical protein  YP_001500734  decreased coverage  1.81159e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0873  CDS  NC_009901  1072069  1073205  1137  secretion protein HlyD family protein  YP_001500735  decreased coverage  5.17081e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0919  CDS  NC_009901  1125070  1126368  1299  DEAD/DEAH box helicase domain-containing protein  YP_001500781  decreased coverage  1.78347e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_0978  CDS  NC_009901  1191649  1192713  1065  uncharacterized FlgJ-related protein-like protein  YP_001500840  decreased coverage  0.00771467  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1031  CDS  NC_009901  1254502  1255080  579  RNA polymerase sigma factor RpoE  YP_001500893  decreased coverage  0.000464646  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1032  CDS  NC_009901  1255104  1255709  606  anti sigma-E protein, RseA  YP_001500894  decreased coverage  0.000142789  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1035  CDS  NC_009901  1257261  1259051  1791  GTP-binding protein LepA  YP_001500897  decreased coverage  0.000276893  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1080  CDS  NC_009901  1307577  1307843  267  30S ribosomal protein S20  YP_001500942  decreased coverage  3.35633e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1105  CDS  NC_009901  1341198  1341596  399  transposase  YP_001500967  decreased coverage  2.99322e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1106  CDS  NC_009901  1341680  1342432  753  integrase catalytic region  YP_001500968  decreased coverage  1.08961e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1107  CDS  NC_009901  1343112  1343390  279  hypothetical protein  YP_001500969  decreased coverage  1.49514e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1108  CDS  NC_009901  1343393  1344457  1065  A/G-specific adenine glycosylase  YP_001500970  decreased coverage  5.62379e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1109  CDS  NC_009901  1344730  1345443  714  tRNA (guanine-N(7)-)-methyltransferase  YP_001500971  decreased coverage  7.26431e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1124  CDS  NC_009901  1362771  1363043  273  hypothetical protein  YP_001500986  decreased coverage  6.81191e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1125  CDS  NC_009901  1363058  1363606  549  protein of unknown function YGGT  YP_001500987  decreased coverage  1.65213e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1126  CDS  NC_009901  1363642  1364460  819  pyrroline-5-carboxylate reductase  YP_001500988  decreased coverage  4.50771e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1164  CDS  NC_009901  1409517  1410620  1104  3,4-dihydroxy-2-butanone 4-phosphate synthase  YP_001501026  decreased coverage  4.68547e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1165  CDS  NC_009901  1410766  1411242  477  6,7-dimethyl-8-ribityllumazine synthase  YP_001501027  decreased coverage  3.56468e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1306  CDS  NC_009901  1590407  1591681  1275  histidyl-tRNA synthetase  YP_001501168  decreased coverage  8.90962e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1307  CDS  NC_009901  1591696  1592316  621  tetratricopeptide TPR_4  YP_001501169  decreased coverage  5.16271e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1438  CDS  NC_009901  1750387  1751853  1467  hypothetical protein  YP_001501298  decreased coverage  0.00290508  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1471  CDS  NC_009901  1794316  1794648  333  preprotein translocase subunit YajC  YP_001501331  decreased coverage  0.000169079  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1532  CDS  NC_009901  1861254  1862582  1329  sodium:dicarboxylate symporter  YP_001501392  decreased coverage  1.32104e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1542  CDS  NC_009901  1876020  1877027  1008  hypothetical protein  YP_001501402  decreased coverage  5.0026e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1606  CDS  NC_009901  1945794  1947068  1275  Beta-ketoacyl synthase  YP_001501466  decreased coverage  8.86766e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1613  CDS  NC_009901  1953056  1954072  1017  aspartate-semialdehyde dehydrogenase  YP_001501473  decreased coverage  1.86594e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1650  CDS  NC_009901  1993853  1996351  2499  hypothetical protein  YP_001501510  decreased coverage  3.05835e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1688  CDS  NC_009901  2051302  2052279  978  cell division protein ZipA  YP_001501547  decreased coverage  3.83332e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1712  CDS  NC_009901  2079870  2080424  555  D,D-heptose 1,7-bisphosphate phosphatase  YP_001501571  decreased coverage  9.43222e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1747  CDS  NC_009901  2124429  2125283  855  phosphonate ABC transporter, periplasmic phosphonate-binding protein  YP_001501605  decreased coverage  2.89626e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1799  CDS  NC_009901  2195597  2197681  2085  elongation factor G  YP_001501657  decreased coverage  0.000204091  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1800  CDS  NC_009901  2198094  2199434  1341  adenosylmethionine-8-amino-7-oxononanoate aminotransferase  YP_001501658  decreased coverage  0.000160977  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1805  CDS  NC_009901  2204080  2204943  864  heat shock protein HtpX  YP_001501663  decreased coverage  0.00990556  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1828  CDS  NC_009901  2226691  2228829  2139  TonB-dependent receptor  YP_001501686  decreased coverage  2.26653e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1837  CDS  NC_009901  2235133  2235819  687  ABC transporter related  YP_001501695  decreased coverage  0.000603885  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1838  CDS  NC_009901  2235809  2236900  1092  multidrug resistance efflux pump-like protein  YP_001501696  decreased coverage  0.000704068  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1857  CDS  NC_009901  2257913  2260102  2190  peptidyl-dipeptidase Dcp  YP_001501715  decreased coverage  5.53999e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1938  CDS  NC_009901  2351070  2353118  2049  hypothetical protein  YP_001501795  decreased coverage  0.00596375  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1949  CDS  NC_009901  2371305  2373161  1857  hypothetical protein  YP_001501806  decreased coverage  1.91587e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1950  CDS  NC_009901  2373357  2373533  177  ribosome modulation factor  YP_001501807  decreased coverage  7.83446e-10  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1951  CDS  NC_009901  2373668  2374183  516  3-hydroxydecanoyl-(acyl carrier protein) dehydratase  YP_001501808  decreased coverage  3.77724e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1968  CDS  NC_009901  2393609  2395546  1938  hypothetical protein  YP_001501825  decreased coverage  0.00352196  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1982  CDS  NC_009901  2406610  2407692  1083  RND family efflux transporter MFP subunit  YP_001501839  decreased coverage  5.42821e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_1983  CDS  NC_009901  2407689  2410793  3105  acriflavin resistance protein  YP_001501840  decreased coverage  0.000463224  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2051  CDS  NC_009901  2484779  2485306  528  flavodoxin FldA  YP_001501906  decreased coverage  6.4376e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2094  CDS  NC_009901  2535348  2536550  1203  integrase family protein  YP_001501949  decreased coverage  0.000349759  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2111  CDS  NC_009901  2554830  2555492  663  hypothetical protein  YP_001501966  decreased coverage  5.65103e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2127  CDS  NC_009901  2576334  2578784  2451  hypothetical protein  YP_001501982  decreased coverage  0.00224294  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2183  CDS  NC_009901  2646480  2647532  1053  hypothetical protein  YP_001502038  decreased coverage  2.40525e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2213  CDS  NC_009901  2686237  2686734  498  hypothetical protein  YP_001502068  decreased coverage  1.17467e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2363  CDS  NC_009901  2881574  2882191  618  Holliday junction DNA helicase RuvA  YP_001502218  decreased coverage  0.00132923  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2364  CDS  NC_009901  2882188  2882709  522  Holliday junction resolvase  YP_001502219  decreased coverage  0.00103097  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2365  CDS  NC_009901  2882717  2883460  744  hypothetical protein  YP_001502220  decreased coverage  0.00180131  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2366  CDS  NC_009901  2883590  2885383  1794  aspartyl-tRNA synthetase  YP_001502221  decreased coverage  0.00207934  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2371  CDS  NC_009901  2891025  2892533  1509  gonadoliberin III-related protein  YP_001502226  decreased coverage  0.00837826  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2478  CDS  NC_009901  3022869  3023798  930  agmatinase  YP_001502333  decreased coverage  0.00187058  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2530  CDS  NC_009901  3081151  3081876  726  arginyl-tRNA-protein transferase  YP_001502385  decreased coverage  1.25656e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2531  CDS  NC_009901  3081991  3082209  219  translation initiation factor IF-1  YP_001502386  decreased coverage  1.32982e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2532  CDS  NC_009901  3082342  3084600  2259  ATP-dependent Clp protease, ATP-binding subunit clpA  YP_001502387  decreased coverage  0.000101202  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2549  CDS  NC_009901  3101185  3103554  2370  phosphoenolpyruvate synthase  YP_001502404  decreased coverage  0.00670387  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2609  CDS  NC_009901  3177827  3179146  1320  aromatic hydrocarbon degradation membrane protein  YP_001502464  decreased coverage  1.12018e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2610  CDS  NC_009901  3179409  3180497  1089  RND family efflux transporter MFP subunit  YP_001502465  decreased coverage  2.56578e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2622  CDS  NC_009901  3191827  3192825  999  alcohol dehydrogenase  YP_001502477  decreased coverage  0.00523973  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2685  CDS  NC_009901  3273368  3273862  495  peptidyl-prolyl cis-trans isomerase cyclophilin type  YP_001502540  decreased coverage  3.42753e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2686  CDS  NC_009901  3273873  3274589  717  UDP-2,3-diacylglucosamine hydrolase  YP_001502541  decreased coverage  7.48093e-09  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2791  CDS  NC_009901  3407670  3408536  867  acyl-CoA thioesterase II  YP_001502646  decreased coverage  0.000176702  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2792  CDS  NC_009901  3408603  3409538  936  short-chain dehydrogenase/reductase SDR  YP_001502647  decreased coverage  0.000504065  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2875  CDS  NC_009901  3512304  3513320  1017  UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase  YP_001502728  decreased coverage  2.79031e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2935  CDS  NC_009901  3595533  3596222  690  two component transcriptional regulator  YP_001502787  decreased coverage  4.7512e-05  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2936  CDS  NC_009901  3596206  3597759  1554  histidine kinase  YP_001502788  decreased coverage  0.00120898  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2969  CDS  NC_009901  3636287  3636976  690  two component transcriptional regulator  YP_001502821  decreased coverage  8.55765e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_2977  CDS  NC_009901  3647968  3648354  387  hypothetical protein  YP_001502829  decreased coverage  0.000102577  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3062  CDS  NC_009901  3757370  3757825  456  hypothetical protein  YP_001502914  decreased coverage  5.25096e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3063  CDS  NC_009901  3758364  3758699  336  preprotein translocase subunit SecG  YP_001502915  decreased coverage  2.01334e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3064  CDS  NC_009901  3758701  3759483  783  triosephosphate isomerase  YP_001502916  decreased coverage  1.37173e-06  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3068  CDS  NC_009901  3764031  3764660  630  23S rRNA methyltransferase J  YP_001502920  decreased coverage  5.67289e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3077  CDS  NC_009901  3775138  3775755  618  peptidylprolyl isomerase FKBP-type  YP_001502929  decreased coverage  7.60442e-08  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3206  CDS  NC_009901  3930329  3932182  1854  TonB-dependent receptor plug  YP_001503057  decreased coverage  0.00965358  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3282  CDS  NC_009901  4023415  4024452  1038  putative monovalent cation/H+ antiporter subunit B  YP_001503132  decreased coverage  0.000131968  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3303  CDS  NC_009901  4046160  4047254  1095  glycine cleavage system aminomethyltransferase T  YP_001503153  decreased coverage  0.00589278  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3322  CDS  NC_009901  4064078  4065676  1599  AMP-dependent synthetase and ligase  YP_001503172  decreased coverage  0.000803182  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3347  CDS  NC_009901  4092267  4092977  711  DNA-binding transcriptional regulator TorR  YP_001503197  decreased coverage  0.000384276  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3424  CDS  NC_009901  4182920  4185754  2835  TonB-dependent receptor  YP_001503272  decreased coverage  0.00012336  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
Spea_3427  CDS  NC_009901  4189078  4190148  1071  permease  YP_001503275  decreased coverage  4.78015e-07  n/a    Shewanella pealeana ATCC 700345  Bacteria 
 
 
-
 
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