121 decreased-coverage genes were found for selected organism/s



Page 1 of 2    << first  < prev  1  2    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Daci_0002  CDS  NC_010002  1544  2662  1119  DNA polymerase III, beta subunit  YP_001561034  decreased coverage  0.00413752  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_0391  CDS  NC_010002  433889  434563  675  50S ribosomal protein L3  YP_001561422  decreased coverage  6.98132e-09  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_0529  CDS  NC_010002  571464  581093  9630  Ig domain-containing protein  YP_001561560  normal  decreased coverage  7.08998e-11  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1034  CDS  NC_010002  1151017  1151556  540  50S ribosomal protein L5  YP_001562065  decreased coverage  1.06866e-05  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1036  CDS  NC_010002  1151891  1152286  396  30S ribosomal protein S8  YP_001562067  decreased coverage  1.59627e-05  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1037  CDS  NC_010002  1152311  1152844  534  50S ribosomal protein L6  YP_001562068  decreased coverage  9.58163e-06  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1306  CDS  NC_010002  1450685  1451740  1056  fimbrial assembly family protein  YP_001562335  normal  0.838759  decreased coverage  0.00904381  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1483  CDS  NC_010002  1659840  1660703  864  TonB family protein  YP_001562512  decreased coverage  0.00129671  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1614  CDS  NC_010002  1811291  1812109  819  hypothetical protein  YP_001562643  decreased coverage  4.51024e-06  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1926  CDS  NC_010002  2121008  2121349  342  hypothetical protein  YP_001562951  hitchhiker  3.73577e-05  decreased coverage  4.68511e-13  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_1927  CDS  NC_010002  2122345  2122542  198  hypothetical protein  YP_001562952  hitchhiker  6.2835e-09  decreased coverage  4.86624e-13  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2072  CDS  NC_010002  2267000  2268478  1479  type II and III secretion system protein  YP_001563097  decreased coverage  0.00565214  normal  0.624153  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2113  CDS  NC_010002  2318812  2319918  1107  tartrate dehydrogenase  YP_001563138  normal  decreased coverage  0.00371607  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2114  CDS  NC_010002  2319971  2320948  978  hypothetical protein  YP_001563139  normal  decreased coverage  0.00328294  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2132  CDS  NC_010002  2340297  2340992  696  Crp/FNR family transcriptional regulator  YP_001563157  decreased coverage  0.00647195  normal  0.364317  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2226  CDS  NC_010002  2442026  2442604  579  YceI family protein  YP_001563251  decreased coverage  6.78562e-05  decreased coverage  0.00447323  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2227  CDS  NC_010002  2442674  2443246  573  YceI family protein  YP_001563252  decreased coverage  0.000482548  decreased coverage  0.00464038  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2228  CDS  NC_010002  2443339  2443932  594  cytochrome B561  YP_001563253  decreased coverage  5.75966e-05  hitchhiker  0.00851734  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2290  CDS  NC_010002  2517422  2518519  1098  hypothetical protein  YP_001563314  normal  decreased coverage  0.000676004  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2291  CDS  NC_010002  2518599  2519531  933  hypothetical protein  YP_001563315  normal  0.851516  decreased coverage  0.000683391  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2292  CDS  NC_010002  2519590  2520417  828  hypothetical protein  YP_001563316  normal  decreased coverage  0.000629985  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2293  CDS  NC_010002  2520777  2522021  1245  cyclopropane-fatty-acyl-phospholipid synthase  YP_001563317  normal  decreased coverage  0.000690855  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2586  CDS  NC_010002  2859179  2860180  1002  late control D family protein  YP_001563609  decreased coverage  0.000462859  hitchhiker  8.49595e-06  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2604  CDS  NC_010002  2876041  2876550  510  P2 phage tail completion R family protein  YP_001563627  decreased coverage  0.000233223  hitchhiker  1.41247e-14  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2605  CDS  NC_010002  2876534  2877100  567  hypothetical protein  YP_001563628  decreased coverage  0.000331071  hitchhiker  1.26895e-14  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2615  CDS  NC_010002  2882570  2884549  1980  replication gene A  YP_001563638  decreased coverage  0.00951013  hitchhiker  1.32404e-12  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2667  CDS  NC_010002  2935066  2936265  1200  binding-protein-dependent transport systems inner membrane component  YP_001563690  decreased coverage  0.00496589  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2690  CDS  NC_010002  2959059  2960327  1269  conjugation TrbI family protein  YP_001563713  decreased coverage  0.00708765  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2856  CDS  NC_010002  3131537  3133786  2250  (p)ppGpp synthetase I, SpoT/RelA  YP_001563879  decreased coverage  0.0013983  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_2998  CDS  NC_010002  3303814  3304905  1092  3-hydroxyisobutyryl-CoA hydrolase  YP_001564021  decreased coverage  0.00246474  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3031  CDS  NC_010002  3334541  3334975  435  endoribonuclease L-PSP  YP_001564054  decreased coverage  0.00544929  normal  0.808496  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3032  CDS  NC_010002  3335029  3335706  678  hypothetical protein  YP_001564055  decreased coverage  0.00540438  normal  0.842366  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3071  CDS  NC_010002  3383080  3383796  717  two component transcriptional regulator  YP_001564094  decreased coverage  0.000985444  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3089  CDS  NC_010002  3408065  3408754  690  peptidase S1 and S6 chymotrypsin/Hap  YP_001564112  decreased coverage  0.00529364  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3145  CDS  NC_010002  3461149  3461844  696  two component transcriptional regulator  YP_001564168  decreased coverage  0.00258001  hitchhiker  0.000377263  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3146  CDS  NC_010002  3461872  3463182  1311  NtaA/SnaA/SoxA family monooxygenase  YP_001564169  decreased coverage  0.00299695  hitchhiker  4.46713e-05  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3154  CDS  NC_010002  3470953  3471261  309  XRE family transcriptional regulator  YP_001564177  decreased coverage  1.23737e-11  hitchhiker  1.22255e-12  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3170  CDS  NC_010002  3488954  3489541  588  2Fe-2S iron-sulfur cluster binding domain-containing protein  YP_001564193  decreased coverage  0.00231144  hitchhiker  0.000119558  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3252  CDS  NC_010002  3556248  3556463  216  Arc domain-containing protein  YP_001564275  decreased coverage  4.79453e-10  hitchhiker  5.51778e-14  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3253  CDS  NC_010002  3556710  3557489  780  KilA domain-containing protein  YP_001564276  decreased coverage  4.73609e-11  decreased coverage  6.35561e-15  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3254  CDS  NC_010002  3557486  3558298  813  prophage antirepressor  YP_001564277  decreased coverage  7.11854e-10  decreased coverage  7.07487e-15  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3255  CDS  NC_010002  3558836  3563503  4668  prophage tail length tape measure  YP_001564278  normal  0.0755523  decreased coverage  3.32378e-13  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3311  CDS  NC_010002  3631897  3632724  828  ABC transporter related  YP_001564334  decreased coverage  0.00410965  normal  0.0296755  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3312  CDS  NC_010002  3632735  3633430  696  ABC transporter related  YP_001564335  decreased coverage  0.000555614  hitchhiker  0.00984182  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3313  CDS  NC_010002  3633581  3635692  2112  3-hydroxyacyl-CoA dehydrogenase NAD-binding  YP_001564336  normal  0.0437613  decreased coverage  0.00999923  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3341  CDS  NC_010002  3665127  3666104  978  hypothetical protein  YP_001564364  decreased coverage  0.0035025  normal  0.828931  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3342  CDS  NC_010002  3666227  3667165  939  dihydrodipicolinate synthetase  YP_001564365  decreased coverage  0.0058629  normal  0.508652  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3356  CDS  NC_010002  3685581  3686906  1326  phosphopyruvate hydratase  YP_001564379  decreased coverage  0.00269891  normal  0.865177  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3385  CDS  NC_010002  3722672  3723535  864  GCN5-related N-acetyltransferase  YP_001564408  decreased coverage  0.00858508  normal  0.169871  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3386  CDS  NC_010002  3723571  3724518  948  folate-binding protein YgfZ  YP_001564409  decreased coverage  0.00306542  normal  0.164661  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3404  CDS  NC_010002  3737924  3738499  576  hypothetical protein  YP_001564427  decreased coverage  3.06771e-11  hitchhiker  0.00328294  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3406  CDS  NC_010002  3740225  3740614  390  hypothetical protein  YP_001564429  hitchhiker  2.02775e-09  decreased coverage  0.0006736  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3407  CDS  NC_010002  3740628  3740912  285  VRR-NUC domain-containing protein  YP_001564430  hitchhiker  1.01416e-09  decreased coverage  0.000615359  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3408  CDS  NC_010002  3741217  3741783  567  endodeoxyribonuclease  YP_001564431  hitchhiker  3.63386e-08  decreased coverage  0.000737222  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3409  CDS  NC_010002  3741780  3742001  222  hypothetical protein  YP_001564432  hitchhiker  1.8495e-07  decreased coverage  0.000645492  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3428  CDS  NC_010002  3758740  3759309  570  hypothetical protein  YP_001564451  decreased coverage  0.000225988  normal  0.043654  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3504  CDS  NC_010002  3850014  3851468  1455  phospholipase D/transphosphatidylase  YP_001564525  decreased coverage  0.00223299  normal  0.671494  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3517  CDS  NC_010002  3863152  3863853  702  hypothetical protein  YP_001564538  decreased coverage  0.000201859  normal  0.326196  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3518  CDS  NC_010002  3863925  3864554  630  uracil phosphoribosyltransferase  YP_001564539  decreased coverage  0.000866568  normal  0.165207  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3528  CDS  NC_010002  3874504  3876405  1902  hypothetical protein  YP_001564549  decreased coverage  0.00681289  decreased coverage  0.00698829  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3529  CDS  NC_010002  3876415  3877644  1230  monooxygenase FAD-binding  YP_001564550  normal  0.174105  decreased coverage  0.00232713  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3531  CDS  NC_010002  3878976  3881198  2223  TonB-dependent siderophore receptor  YP_001564552  normal  0.313722  decreased coverage  0.00643483  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3566  CDS  NC_010002  3913302  3914258  957  asparaginase  YP_001564585  decreased coverage  1.88072e-05  hitchhiker  0.00798524  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3571  CDS  NC_010002  3917414  3917839  426  biopolymer transport protein ExbD/TolR  YP_001564590  normal  0.161015  decreased coverage  0.00354496  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3572  CDS  NC_010002  3917871  3918503  633  MotA/TolQ/ExbB proton channel  YP_001564591  normal  0.0594941  decreased coverage  0.0034613  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3578  CDS  NC_010002  3925147  3925743  597  TetR family transcriptional regulator  YP_001564597  decreased coverage  0.00935563  normal  0.0256006  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3579  CDS  NC_010002  3925796  3926656  861  PEP phosphonomutase  YP_001564598  decreased coverage  0.00948814  hitchhiker  0.00984431  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3587  CDS  NC_010002  3935155  3937782  2628  aconitate hydratase  YP_001564606  normal  decreased coverage  0.00350966  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3593  CDS  NC_010002  3949875  3950882  1008  patatin  YP_001564612  decreased coverage  0.0017391  normal  0.0781992  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3621  CDS  NC_010002  3984761  3985771  1011  tRNA-dihydrouridine synthase A  YP_001564640  decreased coverage  0.00174952  normal  0.0743499  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3628  CDS  NC_010002  3988482  3988748  267  transposase IS3/IS911 family protein  YP_001564645  decreased coverage  0.00241648  normal  0.128538  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3634  CDS  NC_010002  3992735  3992971  237  hypothetical protein  YP_001564651  decreased coverage  0.00339414  normal  0.177913  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3636  CDS  NC_010002  3993550  3994857  1308  response regulator receiver modulated metal dependent phosphohydrolase  YP_001564653  decreased coverage  0.00176884  normal  0.167373  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3655  CDS  NC_010002  4013902  4014393  492  MarR family transcriptional regulator  YP_001564672  decreased coverage  0.00553213  normal  0.217217  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3720  CDS  NC_010002  4086686  4090591  3906  YD repeat-containing protein  YP_001564737  normal  0.148361  decreased coverage  0.000379992  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3731  CDS  NC_010002  4100005  4100394  390  hypothetical protein  YP_001564748  decreased coverage  0.000487251  hitchhiker  0.0067092  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3743  CDS  NC_010002  4112250  4113611  1362  secretion protein HlyD family protein  YP_001564760  decreased coverage  0.00143217  normal  0.519955  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3759  CDS  NC_010002  4131121  4132092  972  response regulator receiver modulated CheW protein  YP_001564776  decreased coverage  0.00050568  normal  0.01011  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3761  CDS  NC_010002  4133380  4133967  588  carbohydrate kinase  YP_001564778  normal  0.117774  decreased coverage  0.00501521  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3762  CDS  NC_010002  4133986  4134492  507  tripartite ATP-independent periplasmic transporter DctQ  YP_001564779  normal  0.0736522  decreased coverage  0.00483087  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3832  CDS  NC_010002  4223002  4223391  390  hypothetical protein  YP_001564848  decreased coverage  0.000375961  normal  0.0175839  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3841  CDS  NC_010002  4232891  4234936  2046  FHA domain-containing protein  YP_001564857  decreased coverage  0.00388095  normal  0.114033  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3871  CDS  NC_010002  4267870  4268868  999  hypothetical protein  YP_001564887  decreased coverage  3.0745e-05  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3872  CDS  NC_010002  4268875  4269345  471  hypothetical protein  YP_001564888  decreased coverage  0.000118438  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3900  CDS  NC_010002  4295821  4296624  804  hypothetical protein  YP_001564916  normal  0.114013  decreased coverage  0.0059619  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3911  CDS  NC_010002  4305937  4306818  882  2-dehydro-3-deoxyglucarate aldolase  YP_001564927  decreased coverage  0.0068475  normal  0.0363616  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3912  CDS  NC_010002  4306815  4308542  1728  dihydroxy-acid dehydratase  YP_001564928  decreased coverage  2.20619e-05  normal  0.0467724  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3918  CDS  NC_010002  4316095  4319211  3117  CzcA family heavy metal efflux protein  YP_001564934  decreased coverage  0.00256702  normal  0.0818754  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3944  CDS  NC_010002  4343476  4344123  648  pyridoxamine 5'-phosphate oxidase  YP_001564960  decreased coverage  0.000793587  normal  0.125259  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3978  CDS  NC_010002  4378623  4380467  1845  dihydrolipoamide dehydrogenase  YP_001564994  normal  0.198165  decreased coverage  0.00908444  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3979  CDS  NC_010002  4380483  4382174  1692  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase  YP_001564995  normal  0.057463  decreased coverage  0.00853533  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_3980  CDS  NC_010002  4382194  4384911  2718  pyruvate dehydrogenase subunit E1  YP_001564996  normal  0.0325061  decreased coverage  0.00734706  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4004  CDS  NC_010002  4409303  4411765  2463  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_001565020  decreased coverage  0.00611465  normal  0.165942  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4105  CDS  NC_010002  4509893  4510141  249  hypothetical protein  YP_001565121  normal  decreased coverage  2.73675e-11  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4106  CDS  NC_010002  4510317  4510676  360  hypothetical protein  YP_001565122  normal  decreased coverage  3.04644e-11  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4237  CDS  NC_010002  4635272  4636060  789  cytochrome c class I  YP_001565253  decreased coverage  0.00192123  normal  0.323742  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4251  CDS  NC_010002  4652529  4653446  918  pseudouridine synthase  YP_001565267  decreased coverage  0.00270285  normal  0.0267319  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4297  CDS  NC_010002  4702769  4704184  1416  methyl-accepting chemotaxis sensory transducer  YP_001565313  decreased coverage  0.00689697  normal  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4340  CDS  NC_010002  4751210  4752187  978  Ku protein  YP_001565356  normal  decreased coverage  0.00918042  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Daci_4341  CDS  NC_010002  4752404  4752616  213  bifunctional endo-1,4-beta-xylanase xylA precursor  YP_001565357  normal  decreased coverage  0.006962  Delftia acidovorans SPH-1  Bacteria 
 
 
-
 
Page 1 of 2    << first  < prev  1  2    next >  last >>