31 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
BamMC406_3257  CDS  NC_010552  164060  165412  +  1353  peptidase M23  YP_001809945  decreased coverage  0.000000116683  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3302  CDS  NC_010552  212516  214336  -  1821  integral membrane sensor hybrid histidine kinase  YP_001809988  normal  1  decreased coverage  0.00552774  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3303  CDS  NC_010552  214338  214841  -  504  oxidoreductase molybdopterin binding  YP_001809989  normal  0.482013  decreased coverage  0.00329734  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3304  CDS  NC_010552  214911  215786  -  876  response regulator receiver protein  YP_001809990  normal  0.0549793  decreased coverage  0.00375163  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3305  CDS  NC_010552  216148  216735  +  588  Sel1 domain-containing protein  YP_001809991  normal  0.0116272  decreased coverage  0.00327996  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3306  CDS  NC_010552  216858  217685  +  828  hypothetical protein  YP_001809992  normal  0.0200987  decreased coverage  0.00359996  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3488  CDS  NC_010552  414760  415350  +  591  hypothetical protein  YP_001810171  normal  1  decreased coverage  0.00401228  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3489  CDS  NC_010552  415347  417188  +  1842  molecular chaperone-like protein  YP_001810172  normal  1  decreased coverage  0.00629635  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3570  CDS  NC_010552  506481  507140  +  660  TetR family transcriptional regulator  YP_001810253  normal  0.649978  decreased coverage  0.00133713  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3571  CDS  NC_010552  507361  507624  -  264  hypothetical protein  YP_001810254  normal  0.48701  decreased coverage  0.0011511  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3764  CDS  NC_010552  733815  734813  -  999  homoserine kinase  YP_001810447  normal  0.208899  decreased coverage  0.000313402  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3765  CDS  NC_010552  734921  735328  -  408  hypothetical protein  YP_001810448  normal  0.0736027  decreased coverage  0.000540931  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3766  CDS  NC_010552  735469  736995  +  1527  AMP nucleosidase  YP_001810449  decreased coverage  0.00262282  decreased coverage  0.000373765  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3767  CDS  NC_010552  737106  737384  -  279  hypothetical protein  YP_001810450  decreased coverage  0.00933749  hitchhiker  0.00116407  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3921  CDS  NC_010552  921978  922970  -  993  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  YP_001810603  decreased coverage  0.00214435  normal  0.666529  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_3923  CDS  NC_010552  924035  925621  +  1587  extracellular solute-binding protein  YP_001810605  decreased coverage  0.00333304  normal  0.449349  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4049  CDS  NC_010552  1071790  1072740  +  951  RpiR family transcriptional regulator  YP_001810730  decreased coverage  0.00364013  normal  0.771447  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4070  CDS  NC_010552  1097721  1098008  -  288  histone family protein nucleoid-structuring protein H-NS  YP_001810751  decreased coverage  0.000676326  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4170  CDS  NC_010552  1213936  1215636  -  1701  levanase  YP_001810850  decreased coverage  0.00206489  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4242  CDS  NC_010552  1297392  1298513  +  1122  extracellular ligand-binding receptor  YP_001810922  decreased coverage  0.00000000756343  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4396  CDS  NC_010552  1471304  1473898  -  2595  hypothetical protein  YP_001811068  normal  0.195504  decreased coverage  0.0070818  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4579  CDS  NC_010552  1685856  1687403  +  1548  outer membrane efflux protein  YP_001811251  normal  0.0188996  decreased coverage  0.000000771093  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4601  CDS  NC_010552  1705766  1707517  -  1752  gamma-glutamyltransferase  YP_001811272  decreased coverage  0.00594681  normal  0.046207  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4875  CDS  NC_010552  2012676  2013122  +  447  MarR family transcriptional regulator  YP_001811539  decreased coverage  0.00000623298  hitchhiker  0.0000000014051  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4881  CDS  NC_010552  2019444  2026544  -  7101  outer membrane autotransporter  YP_001811545  normal  0.312195  decreased coverage  0.00000000166918  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4882  CDS  NC_010552  2027277  2027936  -  660  hypothetical protein  YP_001811546  normal  1  decreased coverage  0.0000000000206501  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_4902  CDS  NC_010552  2048951  2050480  -  1530  methylmalonate-semialdehyde dehydrogenase  YP_001811565  decreased coverage  0.00679319  normal  0.0803346  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_5307  CDS  NC_010552  2528359  2529279  +  921  LysR family transcriptional regulator  YP_001811967  decreased coverage  0.0037216  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_5443  CDS  NC_010552  2682561  2683343  -  783  class II aldolase/adducin domain protein  YP_001812103  decreased coverage  0.00180883  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_5444  CDS  NC_010552  2683478  2684020  +  543  XRE family transcriptional regulator  YP_001812104  decreased coverage  0.00345676  normal  1  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_5487  CDS  NC_010552  2735247  2736506  +  1260  extracellular solute-binding protein  YP_001812147  normal  1  decreased coverage  0.0000866815  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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