70 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
BamMC406_0099  CDS  NC_010551  112020  112547  528  F0F1-type ATP synthase subunit I-like protein  YP_001806817  decreased coverage  0.00813238  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0278  CDS  NC_010551  329224  329538  315  50S ribosomal protein L23  YP_001806995  decreased coverage  3.01066e-11  normal  0.113282  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0279  CDS  NC_010551  329541  330368  828  50S ribosomal protein L2  YP_001806996  decreased coverage  5.85498e-10  normal  0.0839884  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0280  CDS  NC_010551  330379  330654  276  30S ribosomal protein S19  YP_001806997  decreased coverage  4.42981e-11  normal  0.0699946  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0401  CDS  NC_010551  449769  450407  639  TPR repeat-containing protein  YP_001807114  decreased coverage  1.98754e-06  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0402  CDS  NC_010551  450452  450967  516  type VI secretion protein  YP_001807115  decreased coverage  1.94603e-05  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_0403  CDS  NC_010551  450983  452473  1491  EvpB family type VI secretion protein  YP_001807116  decreased coverage  5.70497e-06  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0493  CDS  NC_010551  560003  561199  1197  cell division protein FtsZ  YP_001807206  decreased coverage  2.72239e-09  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0549  CDS  NC_010551  619435  620247  813  short-chain dehydrogenase/reductase SDR  YP_001807262  decreased coverage  0.00753595  normal  0.67708  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0692  CDS  NC_010551  779613  780362  750  tol-pal system protein YbgF  YP_001807404  decreased coverage  0.000467208  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0742  CDS  NC_010551  830602  831846  1245  FAD dependent oxidoreductase  YP_001807454  normal  decreased coverage  0.0018802  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_0907  CDS  NC_010551  997647  1000598  2952  formate dehydrogenase, alpha subunit  YP_001807614  normal  0.979482  decreased coverage  0.00925571  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1398  CDS  NC_010551  1549786  1552005  2220  (p)ppGpp synthetase I, SpoT/RelA  YP_001808102  decreased coverage  8.92312e-05  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1399  CDS  NC_010551  1552447  1554354  1908  threonyl-tRNA synthetase  YP_001808103  decreased coverage  0.00532167  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1434  CDS  NC_010551  1596407  1596817  411  hypothetical protein  YP_001808138  decreased coverage  0.00387753  normal  0.0246951  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1536  CDS  NC_010551  1704719  1707733  3015  filamentous haemagglutinin outer membrane protein  YP_001808239  decreased coverage  0.00333772  normal  0.683009  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1562  CDS  NC_010551  1752278  1754539  2262  TonB-dependent siderophore receptor  YP_001808265  decreased coverage  4.16689e-05  normal  0.182143  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1855  CDS  NC_010551  2068673  2069221  549  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001808553  decreased coverage  1.43568e-07  decreased coverage  5.4807e-07  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_1856  CDS  NC_010551  2069298  2069825  528  carboxymuconolactone decarboxylase  YP_001808554  hitchhiker  0.000315441  decreased coverage  4.95243e-07  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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BamMC406_2004  CDS  NC_010551  2234884  2236026  1143  NlpB/DapX family lipoprotein  YP_001808701  normal  0.547215  decreased coverage  2.02263e-09  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_2166  CDS  NC_010551  2416635  2416994  360  NADH dehydrogenase subunit A  YP_001808861  decreased coverage  0.000804572  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_2510  CDS  NC_010551  2787914  2788861  948  binding-protein-dependent transport systems inner membrane component  YP_001809204  decreased coverage  0.00397469  normal  0.324335  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_2719  CDS  NC_010551  3017579  3018460  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001809412  decreased coverage  8.47528e-05  normal  0.467386  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3090  CDS  NC_010551  3433481  3433894  414  glyoxalase/bleomycin resistance protein/dioxygenase  YP_001809781  decreased coverage  1.52154e-10  decreased coverage  0.00078643  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3257  CDS  NC_010552  164060  165412  1353  peptidase M23  YP_001809945  decreased coverage  1.16683e-07  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3302  CDS  NC_010552  212516  214336  1821  integral membrane sensor hybrid histidine kinase  YP_001809988  normal  decreased coverage  0.00552774  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3303  CDS  NC_010552  214338  214841  504  oxidoreductase molybdopterin binding  YP_001809989  normal  0.482013  decreased coverage  0.00329734  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3304  CDS  NC_010552  214911  215786  876  response regulator receiver protein  YP_001809990  normal  0.0549793  decreased coverage  0.00375163  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3305  CDS  NC_010552  216148  216735  588  Sel1 domain-containing protein  YP_001809991  normal  0.0116272  decreased coverage  0.00327996  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3306  CDS  NC_010552  216858  217685  828  hypothetical protein  YP_001809992  normal  0.0200987  decreased coverage  0.00359996  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3488  CDS  NC_010552  414760  415350  591  hypothetical protein  YP_001810171  normal  decreased coverage  0.00401228  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3489  CDS  NC_010552  415347  417188  1842  molecular chaperone-like protein  YP_001810172  normal  decreased coverage  0.00629635  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3570  CDS  NC_010552  506481  507140  660  TetR family transcriptional regulator  YP_001810253  normal  0.649978  decreased coverage  0.00133713  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3571  CDS  NC_010552  507361  507624  264  hypothetical protein  YP_001810254  normal  0.48701  decreased coverage  0.0011511  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3764  CDS  NC_010552  733815  734813  999  homoserine kinase  YP_001810447  normal  0.208899  decreased coverage  0.000313402  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3765  CDS  NC_010552  734921  735328  408  hypothetical protein  YP_001810448  normal  0.0736027  decreased coverage  0.000540931  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3766  CDS  NC_010552  735469  736995  1527  AMP nucleosidase  YP_001810449  decreased coverage  0.00262282  decreased coverage  0.000373765  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3767  CDS  NC_010552  737106  737384  279  hypothetical protein  YP_001810450  decreased coverage  0.00933749  hitchhiker  0.00116407  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3921  CDS  NC_010552  921978  922970  993  aliphatic sulfonate ABC transporter periplasmic ligand-binding protein  YP_001810603  decreased coverage  0.00214435  normal  0.666529  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_3923  CDS  NC_010552  924035  925621  1587  extracellular solute-binding protein  YP_001810605  decreased coverage  0.00333304  normal  0.449349  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4049  CDS  NC_010552  1071790  1072740  951  RpiR family transcriptional regulator  YP_001810730  decreased coverage  0.00364013  normal  0.771447  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4070  CDS  NC_010552  1097721  1098008  288  histone family protein nucleoid-structuring protein H-NS  YP_001810751  decreased coverage  0.000676326  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4170  CDS  NC_010552  1213936  1215636  1701  levanase  YP_001810850  decreased coverage  0.00206489  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4242  CDS  NC_010552  1297392  1298513  1122  extracellular ligand-binding receptor  YP_001810922  decreased coverage  7.56343e-09  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4396  CDS  NC_010552  1471304  1473898  2595  hypothetical protein  YP_001811068  normal  0.195504  decreased coverage  0.0070818  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4579  CDS  NC_010552  1685856  1687403  1548  outer membrane efflux protein  YP_001811251  normal  0.0188996  decreased coverage  7.71093e-07  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4601  CDS  NC_010552  1705766  1707517  1752  gamma-glutamyltransferase  YP_001811272  decreased coverage  0.00594681  normal  0.046207  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4875  CDS  NC_010552  2012676  2013122  447  MarR family transcriptional regulator  YP_001811539  decreased coverage  6.23298e-06  hitchhiker  1.4051e-09  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4881  CDS  NC_010552  2019444  2026544  7101  outer membrane autotransporter  YP_001811545  normal  0.312195  decreased coverage  1.66918e-09  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4882  CDS  NC_010552  2027277  2027936  660  hypothetical protein  YP_001811546  normal  decreased coverage  2.06501e-11  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_4902  CDS  NC_010552  2048951  2050480  1530  methylmalonate-semialdehyde dehydrogenase  YP_001811565  decreased coverage  0.00679319  normal  0.0803346  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5307  CDS  NC_010552  2528359  2529279  921  LysR family transcriptional regulator  YP_001811967  decreased coverage  0.0037216  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5443  CDS  NC_010552  2682561  2683343  783  class II aldolase/adducin domain protein  YP_001812103  decreased coverage  0.00180883  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5444  CDS  NC_010552  2683478  2684020  543  XRE family transcriptional regulator  YP_001812104  decreased coverage  0.00345676  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5487  CDS  NC_010552  2735247  2736506  1260  extracellular solute-binding protein  YP_001812147  normal  decreased coverage  8.66815e-05  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5538  CDS  NC_010557  32895  33662  768  short-chain dehydrogenase/reductase SDR  YP_001815534  decreased coverage  0.00687705  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5610  CDS  NC_010557  110433  111341  909  AraC family transcriptional regulator  YP_001815606  decreased coverage  0.00190409  normal  0.169642  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5668  CDS  NC_010557  175595  177769  2175  hypothetical protein  YP_001815664  normal  decreased coverage  0.00822917  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5678  CDS  NC_010557  187938  189164  1227  Rieske (2Fe-2S) domain-containing protein  YP_001815674  decreased coverage  1.20872e-05  normal  0.0293014  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_5679  CDS  NC_010557  189438  189998  561  Rossmann fold nucleotide-binding protein-like protein  YP_001815675  decreased coverage  9.03991e-07  normal  0.0372691  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6283  CDS  NC_010557  869887  871713  1827  thiamine pyrophosphate protein  YP_001816269  normal  0.368758  decreased coverage  0.00160036  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6284  CDS  NC_010557  871827  873605  1779  glycoside hydrolase 15-related  YP_001816270  normal  decreased coverage  0.00160036  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6407  CDS  NC_010557  1014184  1014516  333  hypothetical protein  YP_001816390  decreased coverage  0.00903722  normal  0.080212  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6577  CDS  NC_010553  68348  70480  2133  integrase family protein  YP_001812251  decreased coverage  0.00328143  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6638  CDS  NC_010553  130037  132691  2655  fimbrial biogenesis outer membrane usher protein  YP_001812303  hitchhiker  0.00144126  decreased coverage  4.34399e-10  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_6659  CDS  NC_010553  158173  158796  624  two component LuxR family transcriptional regulator  YP_001812316  decreased coverage  3.89797e-05  hitchhiker  0.000384101  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_R0022  tRNA  NC_010551  576217  576293  77  tRNA-Pro    decreased coverage  8.10765e-09  normal  0.522992  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_R0024  tRNA  NC_010551  779427  779503  77  tRNA-Lys    decreased coverage  0.000863518  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_R0041  tRNA  NC_010551  1552100  1552176  77  tRNA-Val    decreased coverage  2.51829e-05  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
-
 
BamMC406_R0068  tRNA  NC_010551  2417149  2417233  85  tRNA-Leu    decreased coverage  0.000344448  normal  Burkholderia ambifaria MC40-6  Bacteria 
 
 
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