35 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tgr7_0196  CDS  NC_011901  214874  215830  957  methionyl-tRNA formyltransferase  YP_002512282  decreased coverage  0.00869838  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0293  CDS  NC_011901  334117  334335  219  hypothetical protein  YP_002512379  decreased coverage  0.00428454  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0406  CDS  NC_011901  442832  443068  237  hypothetical protein  YP_002512491  decreased coverage  1.68958e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0407  CDS  NC_011901  443065  443268  204  hypothetical protein  YP_002512492  decreased coverage  1.73543e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0408  CDS  NC_011901  443261  443731  471  hypothetical protein  YP_002512493  decreased coverage  3.71591e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0438  CDS  NC_011901  461663  461953  291  co-chaperonin GroES  YP_002512523  decreased coverage  7.05596e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0780  CDS  NC_011901  840019  841230  1212  arginine biosynthesis bifunctional protein ArgJ  YP_002512859  decreased coverage  0.00662272  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0835  CDS  NC_011901  900318  900737  420  Rubrerythrin  YP_002512913  decreased coverage  3.45358e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0836  CDS  NC_011901  900822  902165  1344  protein of unknown function DUF224 cysteine-rich region domain protein  YP_002512914  decreased coverage  0.000205692  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0853  CDS  NC_011901  918777  919610  834  hypothetical protein  YP_002512931  decreased coverage  0.00963426  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_0854  CDS  NC_011901  919636  920334  699  hypothetical protein  YP_002512932  decreased coverage  0.00309034  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1008  CDS  NC_011901  1090940  1091905  966  alpha/beta hydrolase fold protein  YP_002513083  decreased coverage  0.00606809  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1049  CDS  NC_011901  1138977  1140395  1419  putative transglycosylase  YP_002513123  decreased coverage  0.00903015  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1133  CDS  NC_011901  1221710  1221934  225  hypothetical protein  YP_002513206  decreased coverage  0.00803332  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1353  CDS  NC_011901  1450167  1452983  2817  ribonuclease E  YP_002513425  decreased coverage  0.000765938  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1487  CDS  NC_011901  1591235  1592455  1221  cysteine desulfurase IscS  YP_002513558  decreased coverage  0.000124631  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1488  CDS  NC_011901  1592609  1593013  405  FeS cluster assembly scaffold IscU  YP_002513559  decreased coverage  0.000147326  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1489  CDS  NC_011901  1593278  1595266  1989  transglutaminase domain-containing protein  YP_002513560  decreased coverage  0.00458411  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1495  CDS  NC_011901  1600105  1600908  804  ABC transporter related  YP_002513566  decreased coverage  0.00076856  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_1787  CDS  NC_011901  1904774  1905559  786  hypothetical protein  YP_002513856  decreased coverage  7.99824e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2014  CDS  NC_011901  2136737  2137954  1218  tryptophanyl-tRNA synthetase  YP_002514081  decreased coverage  0.00685202  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2015  CDS  NC_011901  2138033  2139409  1377  hypothetical protein  YP_002514082  decreased coverage  0.00266925  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2024  CDS  NC_011901  2145951  2147978  2028  DNA ligase (NAD(+))  YP_002514091  decreased coverage  0.00334946  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2210  CDS  NC_011901  2339928  2340374  447  glycine cleavage H-protein  YP_002514277  decreased coverage  0.00775002  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2213  CDS  NC_011901  2342154  2342999  846  hypothetical protein  YP_002514280  decreased coverage  0.00927517  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2321  CDS  NC_011901  2441325  2442149  825  50S ribosomal protein L2  YP_002514388  decreased coverage  9.9496e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2322  CDS  NC_011901  2442162  2442458  297  50S ribosomal protein L23  YP_002514389  decreased coverage  3.34931e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2323  CDS  NC_011901  2442455  2443060  606  ribosomal protein L4/L1e  YP_002514390  decreased coverage  6.58885e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2324  CDS  NC_011901  2443066  2443710  645  ribosomal protein L3  YP_002514391  decreased coverage  6.58885e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2325  CDS  NC_011901  2443845  2444156  312  30S ribosomal protein S10  YP_002514392  decreased coverage  2.3421e-06  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2326  CDS  NC_011901  2444243  2445433  1191  elongation factor Tu  YP_002514393  decreased coverage  1.51481e-05  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2616  CDS  NC_011901  2759010  2759249  240  hypothetical protein  YP_002514678  decreased coverage  0.00109399  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2617  CDS  NC_011901  2759256  2760851  1596  histidine kinase  YP_002514679  decreased coverage  0.000901254  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_2771  CDS  NC_011901  2910718  2911395  678  Glutathione S-transferase domain protein  YP_002514832  decreased coverage  0.00309034  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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Tgr7_R0015  tRNA  NC_011901  1138658  1138747  90  tRNA-Ser    decreased coverage  0.00859623  n/a    Thioalkalivibrio sp. HL-EbGR7  Bacteria 
 
 
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