35 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Msil_0326  CDS  NC_011666  364185  364619  435  glutathione-dependent formaldehyde-activating GFA  YP_002360667  n/a    decreased coverage  0.00145038  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0611  CDS  NC_011666  659819  662425  2607  magnesium-translocating P-type ATPase  YP_002360945  n/a    decreased coverage  0.00465168  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0626  CDS  NC_011666  677001  678344  1344  succinylarginine dihydrolase  YP_002360960  n/a    decreased coverage  0.00494853  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0627  CDS  NC_011666  678384  679073  690  GCN5-related N-acetyltransferase  YP_002360961  n/a    decreased coverage  0.00366295  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0629  CDS  NC_011666  682390  683634  1245  efflux transporter, RND family, MFP subunit  YP_002360963  n/a    decreased coverage  0.00302597  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0630  CDS  NC_011666  683661  685370  1710  RND efflux system, outer membrane lipoprotein, NodT family  YP_002360964  n/a    decreased coverage  0.00465168  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0652  CDS  NC_011666  704720  705709  990  3-oxoacyl-(acyl-carrier-protein) synthase III  YP_002360986  n/a    decreased coverage  0.00619461  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0653  CDS  NC_011666  705713  706822  1110  fatty acid/phospholipid synthesis protein PlsX  YP_002360987  n/a    decreased coverage  0.00416595  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0750  CDS  NC_011666  830121  831965  1845  Serine-type D-Ala-D-Ala carboxypeptidase  YP_002361083  n/a    decreased coverage  8.02893e-05  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0751  CDS  NC_011666  832035  832766  732  heat shock protein DnaJ domain protein  YP_002361084  n/a    decreased coverage  8.68694e-05  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0835  CDS  NC_011666  920008  920718  711  phosphate uptake regulator, PhoU  YP_002361167  n/a    decreased coverage  0.00587435  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0946  CDS  NC_011666  1032586  1032993  408  Thioredoxin domain protein  YP_002361277  n/a    decreased coverage  0.000235523  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0947  CDS  NC_011666  1032990  1033709  720  cytochrome c biogenesis protein transmembrane region  YP_002361278  n/a    decreased coverage  0.000313224  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_0948  CDS  NC_011666  1033731  1034153  423  hypothetical protein  YP_002361279  n/a    decreased coverage  0.000233112  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1020  CDS  NC_011666  1107179  1107754  576  cytochrome B561  YP_002361351  n/a    decreased coverage  0.000282036  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1021  CDS  NC_011666  1107758  1108924  1167  succinyl-diaminopimelate desuccinylase  YP_002361352  n/a    decreased coverage  0.000463021  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1143  CDS  NC_011666  1228207  1229262  1056  MltA domain protein  YP_002361474  n/a    decreased coverage  0.000848892  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1152  CDS  NC_011666  1235530  1239045  3516  indolepyruvate ferredoxin oxidoreductase  YP_002361483  n/a    decreased coverage  0.00216287  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1153  CDS  NC_011666  1239076  1239921  846  Indole-3-glycerol-phosphate synthase  YP_002361484  n/a    decreased coverage  0.000666222  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1201  CDS  NC_011666  1286340  1288142  1803  60 kDa inner membrane insertion protein  YP_002361532  n/a    decreased coverage  0.00276614  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1622  CDS  NC_011666  1752149  1753345  1197  carbamoyl-phosphate synthase, small subunit  YP_002361932  n/a    decreased coverage  0.0014107  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1623  CDS  NC_011666  1753584  1754042  459  GatB/YqeY  YP_002361933  n/a    decreased coverage  0.000911899  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_1624  CDS  NC_011666  1754029  1755222  1194  beta-lactamase  YP_002361934  n/a    decreased coverage  0.000378286  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2060  CDS  NC_011666  2233116  2234132  1017  photosynthetic reaction centre cytochrome c subunit  YP_002362362  n/a    decreased coverage  0.00647835  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2306  CDS  NC_011666  2499943  2500632  690  Glutathione S-transferase domain protein  YP_002362599  n/a    decreased coverage  0.0027483  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2307  CDS  NC_011666  2500914  2501825  912  RNA polymerase, sigma 32 subunit, RpoH  YP_002362600  n/a    decreased coverage  0.00328793  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2439  CDS  NC_011666  2658184  2659182  999  zinc-binding alcohol dehydrogenase family protein  YP_002362730  n/a    decreased coverage  0.00520029  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2440  CDS  NC_011666  2659206  2660735  1530  cyclic nucleotide-regulated small mechanosensitive ion channel  YP_002362731  n/a    decreased coverage  0.00769093  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_2876  CDS  NC_011666  3163611  3164987  1377  mercuric reductase  YP_002363155  n/a    decreased coverage  0.00432777  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3227  CDS  NC_011666  3540566  3541906  1341  protease-like protein  YP_002363496  n/a    decreased coverage  0.000167214  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3302  CDS  NC_011666  3623368  3624120  753  Extensin family protein  YP_002363571  n/a    decreased coverage  0.000699012  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3303  CDS  NC_011666  3624426  3625814  1389  soluble pyridine nucleotide transhydrogenase  YP_002363572  n/a    decreased coverage  0.00106265  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3513  CDS  NC_011666  3858694  3859554  861  hypothetical protein  YP_002363764  n/a    decreased coverage  0.000208854  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3514  CDS  NC_011666  3859815  3860888  1074  aspartate-semialdehyde dehydrogenase  YP_002363765  n/a    decreased coverage  0.000101086  Methylocella silvestris BL2  Bacteria 
 
 
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Msil_3834  CDS  NC_011666  4196880  4197782  903  phosphatidate cytidylyltransferase  YP_002364078  n/a    decreased coverage  0.00786591  Methylocella silvestris BL2  Bacteria 
 
 
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