28 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bind_0448  CDS  NC_010581  504108  505031  924  methyltransferase type 12  YP_001831590  decreased coverage  0.00834451  normal  0.0296348  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1258  CDS  NC_010581  1458776  1459606  831  pyrroline-5-carboxylate reductase  YP_001832388  normal  decreased coverage  0.00981476  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1259  CDS  NC_010581  1459804  1460304  501  hypothetical protein  YP_001832389  normal  decreased coverage  0.00906465  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1267  CDS  NC_010581  1472954  1473358  405  response regulator receiver/SARP domain-containing protein  YP_001832397  normal  decreased coverage  0.00862788  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1319  CDS  NC_010581  1527782  1529899  2118  levanase  YP_001832448  decreased coverage  0.00921692  normal  0.915882  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1619  CDS  NC_010581  1829140  1830585  1446  magnesium transporter  YP_001832739  decreased coverage  0.00438274  normal  0.116909  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1727  CDS  NC_010581  1955122  1955448  327  hypothetical protein  YP_001832846  normal  decreased coverage  0.000637719  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1728  CDS  NC_010581  1955432  1955998  567  GCN5-related N-acetyltransferase  YP_001832847  normal  decreased coverage  0.000677629  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1729  CDS  NC_010581  1956084  1956680  597  dihydrofolate reductase  YP_001832848  normal  decreased coverage  0.000733059  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1730  CDS  NC_010581  1956760  1957929  1170  HflK protein  YP_001832849  normal  decreased coverage  0.000348315  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1731  CDS  NC_010581  1957926  1958813  888  HflC protein  YP_001832850  normal  decreased coverage  0.000316611  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1732  CDS  NC_010581  1958879  1959607  729  hypothetical protein  YP_001832851  normal  decreased coverage  0.000872806  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1738  CDS  NC_010581  1965730  1967376  1647  chaperonin GroEL  YP_001832857  normal  0.280539  decreased coverage  0.00152275  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1739  CDS  NC_010581  1967746  1968114  369  histone family protein DNA-binding protein  YP_001832858  normal  0.269584  decreased coverage  0.000883525  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1740  CDS  NC_010581  1968556  1970694  2139  ABC transporter  YP_001832859  normal  decreased coverage  0.000825117  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1741  CDS  NC_010581  1970839  1971222  384  hypothetical protein  YP_001832860  normal  decreased coverage  0.00107556  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_1991  CDS  NC_010581  2275663  2276790  1128  LuxR family transcriptional regulator  YP_001833103  normal  decreased coverage  0.00358246  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2022  CDS  NC_010581  2311418  2312176  759  hypothetical protein  YP_001833133  decreased coverage  0.00187393  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2189  CDS  NC_010581  2503103  2503855  753  GDSL family lipase  YP_001833298  decreased coverage  0.00786475  normal  0.715805  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2376  CDS  NC_010581  2714654  2716240  1587  RNA-binding S4 domain-containing protein  YP_001833476  decreased coverage  0.000179936  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2391  CDS  NC_010581  2731596  2732624  1029  NADH dehydrogenase subunit H  YP_001833491  decreased coverage  4.91536e-05  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2860  CDS  NC_010581  3263483  3264847  1365  carbohydrate-selective porin OprB  YP_001833918  decreased coverage  0.00385913  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_2861  CDS  NC_010581  3264953  3265882  930  periplasmic binding protein/LacI transcriptional regulator  YP_001833919  decreased coverage  0.00405542  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_3038  CDS  NC_010581  3460599  3460874  276  hypothetical protein  YP_001834089  decreased coverage  0.00723239  normal  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_3194  CDS  NC_010581  3634503  3635684  1182  integral membrane protein-like protein  YP_001834243  hitchhiker  0.00740284  decreased coverage  0.00804794  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_3622  CDS  NC_010581  4107954  4108319  366  response regulator receiver protein  YP_001834664  normal  decreased coverage  0.00707081  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_3686  CDS  NC_010580  5886  8246  2361  DotL  YP_001830982  decreased coverage  0.00900266  normal  0.235831  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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Bind_R0026  tRNA  NC_010581  1832129  1832213  85  tRNA-Leu    decreased coverage  0.00329777  normal  0.13088  Beijerinckia indica subsp. indica ATCC 9039  Bacteria 
 
 
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