91 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Lcho_0001  CDS  NC_010524  72  1604  1533  chromosomal replication initiation protein  YP_001789042  n/a    decreased coverage  4.51615e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0002  CDS  NC_010524  1718  2863  1146  DNA polymerase III, beta subunit  YP_001789043  n/a    decreased coverage  3.0299e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0007  CDS  NC_010524  7594  8796  1203  putative PAS/PAC sensor protein  YP_001789048  n/a    decreased coverage  2.12043e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0008  CDS  NC_010524  8901  10451  1551  peptidoglycan binding domain-containing protein  YP_001789049  n/a    decreased coverage  2.97379e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0103  CDS  NC_010524  106331  107143  813  short-chain dehydrogenase/reductase SDR  YP_001789143  n/a    decreased coverage  8.61363e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0104  CDS  NC_010524  107261  108475  1215  hypothetical protein  YP_001789144  n/a    decreased coverage  0.000103575  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0226  CDS  NC_010524  241426  242085  660  putative signal peptide protein  YP_001789266  n/a    decreased coverage  0.000356049  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0227  CDS  NC_010524  242079  242867  789  biotin--acetyl-CoA-carboxylase ligase  YP_001789267  n/a    decreased coverage  0.00038256  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0228  CDS  NC_010524  242876  243415  540  nuclear protein SET  YP_001789268  n/a    decreased coverage  0.000325788  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0229  CDS  NC_010524  243539  246169  2631  DNA topoisomerase III  YP_001789269  n/a    decreased coverage  0.00108901  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0230  CDS  NC_010524  246166  247317  1152  metal dependent phosphohydrolase  YP_001789270  n/a    decreased coverage  0.000415135  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0238  CDS  NC_010524  254405  256600  2196  DNA polymerase III, epsilon subunit  YP_001789278  n/a    decreased coverage  0.000829837  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0239  CDS  NC_010524  256769  257434  666  YbaK/prolyl-tRNA synthetase associated region  YP_001789279  n/a    decreased coverage  0.000372034  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0240  CDS  NC_010524  257542  259233  1692  major facilitator transporter  YP_001789280  n/a    decreased coverage  0.000308236  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0241  CDS  NC_010524  259269  260456  1188  hypothetical protein  YP_001789281  n/a    decreased coverage  0.0004698  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0242  CDS  NC_010524  260453  261088  636  two component LuxR family transcriptional regulator  YP_001789282  n/a    decreased coverage  0.000159114  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0363  CDS  NC_010524  397741  398859  1119  hypothetical protein  YP_001789403  n/a    decreased coverage  1.1603e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0364  CDS  NC_010524  398884  399822  939  thioredoxin domain-containing protein  YP_001789404  n/a    decreased coverage  1.10184e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0365  CDS  NC_010524  399871  400365  495  phosphoribosylaminoimidazole carboxylase, catalytic subunit  YP_001789405  n/a    decreased coverage  7.69841e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0366  CDS  NC_010524  400365  401585  1221  phosphoribosylaminoimidazole carboxylase ATPase subunit  YP_001789406  n/a    decreased coverage  1.5812e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0367  CDS  NC_010524  401600  402640  1041  Sua5/YciO/YrdC/YwlC family protein  YP_001789407  n/a    decreased coverage  1.43554e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0497  CDS  NC_010524  538139  539200  1062  recombinase A  YP_001789537  n/a    decreased coverage  0.00187604  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0603  CDS  NC_010524  653388  654551  1164  putative sigma E regulatory protein, MucB/RseB  YP_001789643  n/a    decreased coverage  2.01809e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0604  CDS  NC_010524  654548  655195  648  anti sigma-E protein, RseA  YP_001789644  n/a    decreased coverage  9.98375e-11  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0605  CDS  NC_010524  655221  655829  609  RNA polymerase sigma factor RpoE  YP_001789645  n/a    decreased coverage  9.48588e-11  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0606  CDS  NC_010524  655819  656313  495  hypothetical protein  YP_001789646  n/a    decreased coverage  9.16707e-11  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0607  CDS  NC_010524  656341  657585  1245  3-oxoacyl-(acyl-carrier-protein) synthase 2  YP_001789647  n/a    decreased coverage  1.70362e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_0772  CDS  NC_010524  832632  835964  3333  DEAD/DEAH box helicase domain-containing protein  YP_001789810  n/a    decreased coverage  4.67672e-11  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1283  CDS  NC_010524  1368677  1369438  762  beta-lactamase domain-containing protein  YP_001790317  n/a    decreased coverage  4.7241e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1284  CDS  NC_010524  1369548  1370243  696  ABC transporter-related protein  YP_001790318  n/a    decreased coverage  1.36369e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1285  CDS  NC_010524  1370240  1371226  987  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_001790319  n/a    decreased coverage  1.69649e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1495  CDS  NC_010524  1580010  1581176  1167  aspartate aminotransferase  YP_001790528  n/a    decreased coverage  0.00201329  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1508  CDS  NC_010524  1593814  1594872  1059  NADH dehydrogenase (quinone)  YP_001790541  n/a    decreased coverage  0.00230102  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1600  CDS  NC_010524  1697384  1699168  1785  methyl-accepting chemotaxis sensory transducer  YP_001790632  n/a    decreased coverage  0.00034667  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1602  CDS  NC_010524  1700657  1703281  2625  hypothetical protein  YP_001790634  n/a    decreased coverage  0.000566259  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1713  CDS  NC_010524  1830641  1831711  1071  hypothetical protein  YP_001790745  n/a    decreased coverage  1.87754e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1714  CDS  NC_010524  1831769  1832467  699  hypothetical protein  YP_001790746  n/a    decreased coverage  1.67749e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1721  CDS  NC_010524  1837377  1838225  849  binding-protein-dependent transport systems inner membrane component  YP_001790753  n/a    decreased coverage  1.86214e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1722  CDS  NC_010524  1838222  1839061  840  ABC transporter-related protein  YP_001790754  n/a    decreased coverage  2.01925e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1723  CDS  NC_010524  1839079  1839942  864  phosphonate ABC transporter, periplasmic phosphonate-binding protein  YP_001790755  n/a    decreased coverage  2.6328e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1785  CDS  NC_010524  1928503  1928949  447  hypothetical protein  YP_001790817  n/a    decreased coverage  5.20895e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1988  CDS  NC_010524  2154357  2156549  2193  isoquinoline 1-oxidoreductase  YP_001791020  n/a    decreased coverage  4.27056e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1989  CDS  NC_010524  2156612  2157610  999  D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding  YP_001791021  n/a    decreased coverage  5.14509e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1990  CDS  NC_010524  2157636  2159051  1416  hypothetical protein  YP_001791022  n/a    decreased coverage  7.20766e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1995  CDS  NC_010524  2162359  2162952  594  electron transport protein SCO1/SenC  YP_001791027  n/a    decreased coverage  3.92946e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1996  CDS  NC_010524  2163035  2163499  465  hypothetical protein  YP_001791028  n/a    decreased coverage  3.52963e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1997  CDS  NC_010524  2163565  2164266  702  CRP/FNR family transcriptional regulator  YP_001791029  n/a    decreased coverage  1.21238e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_1999  CDS  NC_010524  2164913  2165821  909  hypothetical protein  YP_001791031  n/a    decreased coverage  4.68995e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2072  CDS  NC_010524  2254923  2258657  3735  cellulose synthase domain-containing protein  YP_001791104  n/a    decreased coverage  0.00026145  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2152  CDS  NC_010524  2353393  2355108  1716  putative glutamate synthase (NADPH) small subunit  YP_001791183  n/a    decreased coverage  7.64519e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2486  CDS  NC_010524  2708431  2709834  1404  beta-lactamase domain-containing protein  YP_001791516  n/a    decreased coverage  2.15978e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2487  CDS  NC_010524  2709913  2710899  987  GTP-binding protein HSR1-related  YP_001791517  n/a    decreased coverage  1.10563e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2537  CDS  NC_010524  2764414  2765370  957  2-nitropropane dioxygenase NPD  YP_001791567  n/a    decreased coverage  0.000289542  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2538  CDS  NC_010524  2765370  2767160  1791  acyl-CoA dehydrogenase domain-containing protein  YP_001791568  n/a    decreased coverage  0.000216055  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2576  CDS  NC_010524  2811673  2813613  1941  molecular chaperone DnaK  YP_001791606  n/a    decreased coverage  0.000174764  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2578  CDS  NC_010524  2815038  2816771  1734  response regulator receiver protein  YP_001791608  n/a    decreased coverage  0.000176794  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2579  CDS  NC_010524  2816708  2817985  1278  L-carnitine dehydratase/bile acid-inducible protein F  YP_001791609  n/a    decreased coverage  0.000133596  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2724  CDS  NC_010524  3005233  3006450  1218  flagellar hook-associated protein 3  YP_001791754  n/a    decreased coverage  1.13698e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2725  CDS  NC_010524  3006548  3008470  1923  flagellar hook-associated protein FlgK  YP_001791755  n/a    decreased coverage  5.57458e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2791  CDS  NC_010524  3073336  3074442  1107  FAD-dependent pyridine nucleotide-disulphide oxidoreductase  YP_001791821  n/a    decreased coverage  1.73446e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2792  CDS  NC_010524  3074516  3076750  2235  PAS/PAC sensor signal transduction histidine kinase  YP_001791822  n/a    decreased coverage  1.23782e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_2890  CDS  NC_010524  3184635  3185477  843  CDP-diacylglycerol--serine O-phosphatidyltransferase  YP_001791920  n/a    decreased coverage  0.0022345  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3044  CDS  NC_010524  3361205  3362872  1668  hypothetical protein  YP_001792069  n/a    decreased coverage  1.01024e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3045  CDS  NC_010524  3362869  3363261  393  GPW/gp25 family protein  YP_001792070  n/a    decreased coverage  3.7696e-08  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3173  CDS  NC_010524  3503641  3505731  2091  diguanylate cyclase with PAS/PAC sensor  YP_001792197  n/a    decreased coverage  0.000648957  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3182  CDS  NC_010524  3517521  3518468  948  AraC family transcriptional regulator  YP_001792206  n/a    decreased coverage  0.000265571  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3271  CDS  NC_010524  3632544  3635489  2946  protein of unknown function DUF940 membrane lipoprotein putative  YP_001792294  n/a    decreased coverage  7.71318e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3413  CDS  NC_010524  3797581  3798627  1047  outer membrane porin  YP_001792436  n/a    decreased coverage  3.36209e-07  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3497  CDS  NC_010524  3910512  3911387  876  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001792516  n/a    decreased coverage  5.7654e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3498  CDS  NC_010524  3911601  3912563  963  ribose-phosphate pyrophosphokinase  YP_001792517  n/a    decreased coverage  5.49461e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3499  CDS  NC_010524  3912631  3913257  627  50S ribosomal protein L25/general stress protein Ctc  YP_001792518  n/a    decreased coverage  4.91159e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3541  CDS  NC_010524  3958481  3959077  597  hypothetical protein  YP_001792560  n/a    decreased coverage  7.08449e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3542  CDS  NC_010524  3959226  3960167  942  RNA polymerase, sigma 32 subunit, RpoH  YP_001792561  n/a    decreased coverage  3.81173e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3543  CDS  NC_010524  3960444  3965255  4812  multi-sensor hybrid histidine kinase  YP_001792562  n/a    decreased coverage  0.00143205  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3614  CDS  NC_010524  4037141  4037371  231  SirA family protein  YP_001792633  n/a    decreased coverage  0.000103575  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3615  CDS  NC_010524  4037346  4037633  288  hypothetical protein  YP_001792634  n/a    decreased coverage  0.000102904  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3616  CDS  NC_010524  4037742  4039322  1581  Ppx/GppA phosphatase  YP_001792635  n/a    decreased coverage  5.01756e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3617  CDS  NC_010524  4039489  4040094  606  hypothetical protein  YP_001792636  n/a    decreased coverage  0.000150148  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3618  CDS  NC_010524  4040134  4041222  1089  Mg2 transporter protein CorA family protein  YP_001792637  n/a    decreased coverage  3.1468e-05  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3619  CDS  NC_010524  4041369  4042301  933  metallophosphoesterase  YP_001792638  n/a    decreased coverage  0.000151041  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3707  CDS  NC_010524  4146630  4147943  1314  RND family efflux transporter MFP subunit  YP_001792726  n/a    decreased coverage  0.00914113  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3708  CDS  NC_010524  4147940  4148704  765  ABC transporter-related protein  YP_001792727  n/a    decreased coverage  0.00747361  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_3964  CDS  NC_010524  4442204  4445311  3108  acriflavin resistance protein  YP_001792983  n/a    decreased coverage  0.000156628  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4040  CDS  NC_010524  4525990  4528587  2598  cyanophycin synthetase  YP_001793059  n/a    decreased coverage  1.42292e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4041  CDS  NC_010524  4528621  4529529  909  protein of unknown function zinc metallopeptidase putative  YP_001793060  n/a    decreased coverage  2.95256e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4083  CDS  NC_010524  4576776  4577921  1146  hypothetical protein  YP_001793100  n/a    decreased coverage  3.70903e-10  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4084  CDS  NC_010524  4577943  4580693  2751  type VI secretion ATPase  YP_001793101  n/a    decreased coverage  2.02411e-09  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4196  CDS  NC_010524  4704139  4706196  2058  tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA  YP_001793212  n/a    decreased coverage  7.0929e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4197  CDS  NC_010524  4706186  4706842  657  16S rRNA methyltransferase GidB  YP_001793213  n/a    decreased coverage  2.64563e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_4198  CDS  NC_010524  4706951  4707562  612  lysine exporter protein LysE/YggA  YP_001793214  n/a    decreased coverage  2.5376e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
-
 
Lcho_R0046  tRNA  NC_010524  3076842  3076917  76  tRNA-Asn    n/a    decreased coverage  6.52879e-06  Leptothrix cholodnii SP-6  Bacteria 
 
 
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