75 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bmul_0102  CDS  NC_010084  107844  108314  471  F0F1 ATP synthase subunit B  YP_001578294  decreased coverage  0.000584216  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0289  CDS  NC_010084  315529  316053  525  HMG-I and HMG-Y DNA-binding domain-containing protein  YP_001578481  decreased coverage  0.00730754  normal  0.345935  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0394  CDS  NC_010084  435559  436347  789  hypothetical protein  YP_001578586  normal  0.672382  decreased coverage  0.00485022  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0395  CDS  NC_010084  436369  437760  1392  patatin  YP_001578587  normal  decreased coverage  0.00554522  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0479  CDS  NC_010084  522271  523407  1137  N-acetylglucosamine-6-phosphate deacetylase  YP_001578671  decreased coverage  0.00985236  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0514  CDS  NC_010084  562893  563774  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001578706  decreased coverage  0.000372981  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0775  CDS  NC_010084  851690  851893  204  cold-shock DNA-binding domain-containing protein  YP_001578967  decreased coverage  1.50831e-11  hitchhiker  1.49768e-10  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0896  CDS  NC_010084  982945  983157  213  hypothetical protein  YP_001579087  normal  decreased coverage  0.00229737  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0897  CDS  NC_010084  983285  984706  1422  alpha,alpha-trehalose-phosphate synthase (UDP-forming)  YP_001579088  normal  decreased coverage  0.00395341  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_0941  CDS  NC_010084  1028619  1029068  450  3-demethylubiquinone-9 3-methyltransferase  YP_001579129  decreased coverage  0.000300848  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1028  CDS  NC_010084  1124662  1125021  360  NADH dehydrogenase subunit A  YP_001579216  decreased coverage  3.44473e-06  normal  0.199996  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1125  CDS  NC_010084  1235292  1237457  2166  peptidase S9 prolyl oligopeptidase  YP_001579312  decreased coverage  0.00651092  normal  0.350875  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1126  CDS  NC_010084  1237503  1238321  819  exodeoxyribonuclease III Xth  YP_001579313  decreased coverage  0.00222533  normal  0.38819  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1173  CDS  NC_010084  1290709  1291599  891  alpha/beta hydrolase fold  YP_001579360  normal  0.95564  decreased coverage  1.35804e-07  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1174  CDS  NC_010084  1291717  1292556  840  phosphotransferase domain-containing protein  YP_001579361  normal  0.806701  decreased coverage  1.45397e-07  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1325  CDS  NC_010084  1455013  1456032  1020  pyridoxal-5'-phosphate-dependent protein beta subunit  YP_001579510  decreased coverage  1.30693e-10  hitchhiker  0.00142228  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1330  CDS  NC_010084  1462410  1462937  528  carboxymuconolactone decarboxylase  YP_001579515  normal  0.0388186  decreased coverage  7.67761e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1331  CDS  NC_010084  1463015  1463563  549  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001579516  decreased coverage  0.000136268  decreased coverage  7.30969e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1332  CDS  NC_010084  1463752  1465113  1362  integral membrane sensor signal transduction histidine kinase  YP_001579517  normal  0.0152315  decreased coverage  0.000105816  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1333  CDS  NC_010084  1465154  1465888  735  osmolarity response regulator  YP_001579518  hitchhiker  0.00265076  decreased coverage  7.10625e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1334  CDS  NC_010084  1466146  1466424  279  hypothetical protein  YP_001579519  normal  0.0626491  decreased coverage  5.0707e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1335  CDS  NC_010084  1466544  1468055  1512  hypothetical protein  YP_001579520  normal  0.125081  decreased coverage  8.70574e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1418  CDS  NC_010084  1560665  1561903  1239  aminotransferase AlaT  YP_001579603  decreased coverage  0.00886152  normal  0.0522162  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1427  CDS  NC_010084  1571406  1571837  432  hypothetical protein  YP_001579612  normal  0.874769  decreased coverage  0.000928648  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1428  CDS  NC_010084  1571926  1572549  624  hypothetical protein  YP_001579613  normal  0.441194  decreased coverage  0.00108668  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1429  CDS  NC_010084  1572828  1573289  462  MerR family transcriptional regulator  YP_001579614  normal  0.271555  decreased coverage  0.000928648  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1431  CDS  NC_010084  1573760  1575676  1917  Fis family GAF modulated sigma54 specific transcriptional regulator  YP_001579616  normal  0.0267113  decreased coverage  0.00146608  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1432  CDS  NC_010084  1576060  1577271  1212  ATP-NAD/AcoX kinase  YP_001579617  normal  0.353034  decreased coverage  0.000962833  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1594  CDS  NC_010084  1748138  1750342  2205  TonB-dependent siderophore receptor  YP_001579779  decreased coverage  0.000849595  hitchhiker  0.00416618  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1602  CDS  NC_010084  1771386  1773476  2091  iron-hydroxamate transporter permease subunit  YP_001579787  normal  decreased coverage  0.00028536  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1603  CDS  NC_010084  1773473  1774315  843  ABC transporter related  YP_001579788  normal  0.247677  decreased coverage  0.000149887  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1664  CDS  NC_010084  1836379  1837452  1074  tRNA-dihydrouridine synthase A  YP_001579849  decreased coverage  1.28148e-06  normal  0.374359  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1699  CDS  NC_010084  1872304  1872753  450  MerR family transcriptional regulator  YP_001579884  decreased coverage  0.00675025  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1730  CDS  NC_010084  1910967  1912310  1344  type II secretion system protein E  YP_001579915  normal  decreased coverage  2.24608e-07  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1842  CDS  NC_010084  2018597  2019067  471  hypothetical protein  YP_001580027  decreased coverage  0.00407013  hitchhiker  4.04065e-06  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1851  CDS  NC_010084  2024203  2025252  1050  RecT protein  YP_001580036  normal  0.0204847  decreased coverage  3.11645e-10  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1852    NC_010084  2025294  2025887  594      normal  0.313301  decreased coverage  2.3341e-10  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1853  CDS  NC_010084  2026060  2026362  303  recombination endonuclease VII  YP_001580037  normal  0.545834  decreased coverage  2.14012e-10  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1854  CDS  NC_010084  2026335  2026463  129  hypothetical protein  YP_001580038  normal  0.905277  decreased coverage  1.92484e-10  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_1943  CDS  NC_010084  2131293  2132069  777  CRP/FNR family transcriptional regulator  YP_001580127  normal  0.706004  decreased coverage  0.00341057  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_2032  CDS  NC_010084  2228127  2229713  1587  lytic transglycosylase catalytic  YP_001580214  decreased coverage  2.77955e-09  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_2160  CDS  NC_010084  2375758  2376345  588  CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase  YP_001580342  decreased coverage  0.000157775  normal  0.384361  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_2803  CDS  NC_010084  3056050  3057045  996  polyprenyl synthetase  YP_001580984  decreased coverage  6.73013e-06  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_2930  CDS  NC_010084  3206028  3206543  516  type VI secretion protein  YP_001581111  decreased coverage  0.00592536  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3117  CDS  NC_010084  3403606  3404307  702  two component Fis family transcriptional regulator  YP_001581298  decreased coverage  0.00594667  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3131  CDS  NC_010084  3420409  3420870  462  thioesterase superfamily protein  YP_001581312  decreased coverage  0.00791508  hitchhiker  0.00397515  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3338  CDS  NC_010086  222926  225193  2268  TonB-dependent hemoglobin/transferrin/lactoferrin family receptor  YP_001583314  normal  0.275973  decreased coverage  0.000566863  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3376  CDS  NC_010086  268602  268952  351  toxin ChpB  YP_001583352  decreased coverage  0.00160549  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3377  CDS  NC_010086  268946  269197  252  transcriptional regulator/antitoxin, MazE  YP_001583353  decreased coverage  0.00170089  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3434  CDS  NC_010086  334788  337121  2334  5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase  YP_001583410  decreased coverage  0.0080658  normal  0.291084  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3682  CDS  NC_010086  628772  630829  2058  multi-sensor signal transduction histidine kinase  YP_001583658  decreased coverage  0.00804168  normal  0.462115  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3755  CDS  NC_010086  733777  735108  1332  type III secretion system apparatus protein YscQ/HrcQ  YP_001583731  normal  decreased coverage  0.00143257  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3847  CDS  NC_010086  820140  820676  537  hypothetical protein  YP_001583822  hitchhiker  7.76833e-05  decreased coverage  2.2833e-11  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3849  CDS  NC_010086  821282  821719  438  XRE family transcriptional regulator  YP_001583824  normal  0.0683643  decreased coverage  2.01504e-11  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_3978  CDS  NC_010086  953434  954114  681  2OG-Fe(II) oxygenase  YP_001583953  normal  decreased coverage  0.0084294  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4007  CDS  NC_010086  982077  982250  174  helix-turn-helix protein, CopG  YP_001583982  decreased coverage  0.00925339  normal  0.282406  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4132  CDS  NC_010086  1140333  1141427  1095  alcohol dehydrogenase  YP_001584105  decreased coverage  0.00103108  normal  0.177919  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4329  CDS  NC_010086  1376460  1377605  1146  glycerophosphoryl diester phosphodiesterase  YP_001584301  decreased coverage  0.00293344  normal  0.0904766  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4717  CDS  NC_010086  1834860  1836161  1302  hypothetical protein  YP_001584686  decreased coverage  0.00256772  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4784  CDS  NC_010086  1906128  1907111  984  ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein  YP_001584747  decreased coverage  2.65162e-06  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4811  CDS  NC_010086  1934057  1935403  1347  d-galactonate transporter  YP_001584774  decreased coverage  0.00271172  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4825  CDS  NC_010086  1952224  1953099  876  carboxymethylenebutenolidase  YP_001584788  decreased coverage  0.00463404  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4827  CDS  NC_010086  1954945  1957698  2754  DNA polymerase I  YP_001584790  decreased coverage  0.00421235  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_4902  CDS  NC_010086  2022130  2022912  783  cationic amino acid ABC transporter, periplasmic binding protein  YP_001584865  normal  0.463911  decreased coverage  4.75761e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5170  CDS  NC_010086  2317749  2319578  1830  glucosamine--fructose-6-phosphate aminotransferase, isomerizing  YP_001585132  decreased coverage  0.000225496  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5337  CDS  NC_010087  13650  14900  1251  metallophosphoesterase  YP_001585299  normal  decreased coverage  0.00542986  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5338  CDS  NC_010087  14904  18374  3471  hypothetical protein  YP_001585300  normal  0.498426  decreased coverage  0.0063225  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5390  CDS  NC_010087  82072  82983  912  hypothetical protein  YP_001585352  decreased coverage  0.00108195  hitchhiker  0.00662206  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5488  CDS  NC_010087  185146  187272  2127  glycogen debranching enzyme GlgX  YP_001585450  normal  0.168137  decreased coverage  6.16357e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5489  CDS  NC_010087  187305  189503  2199  glycogen branching enzyme  YP_001585451  normal  0.461102  decreased coverage  6.52942e-05  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5808  CDS  NC_010087  525256  526614  1359  AMP-dependent synthetase and ligase  YP_001585763  normal  0.681195  decreased coverage  0.000412169  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_5987  CDS  NC_010087  722730  724106  1377  major facilitator transporter  YP_001585937  decreased coverage  0.0025736  normal  0.0488638  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_6035  CDS  NC_010087  776973  778190  1218  porin  YP_001585985  decreased coverage  0.00334523  normal  0.102447  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_6264  CDS  NC_010070  126657  127223  567  XRE family transcriptional regulator  YP_001573717  decreased coverage  1.84029e-05  normal  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
Bmul_R0009  tRNA  NC_010084  267591  267676  86  tRNA-Tyr    decreased coverage  8.16684e-13  normal  0.0119926  Burkholderia multivorans ATCC 17616  Bacteria 
 
 
-
 
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