117 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Ccel_0001  CDS  NC_011898  27  1349  1323  chromosomal replication initiation protein  YP_002504369  decreased coverage  1.18947e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0054  CDS  NC_011898  62580  63638  1059  periplasmic sugar-binding protein  YP_002504422  decreased coverage  3.50797e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0055  CDS  NC_011898  63997  64281  285  ribosomal protein S6  YP_002504423  decreased coverage  5.48177e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0074  CDS  NC_011898  88905  89834  930  hypothetical protein  YP_002504442  decreased coverage  7.0418e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0087  CDS  NC_011898  102061  103251  1191  S-adenosylmethionine synthetase  YP_002504455  decreased coverage  2.21578e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0108  CDS  NC_011898  123349  124686  1338  Kelch repeat protein  YP_002504476  decreased coverage  7.5462e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0136  CDS  NC_011898  151422  152189  768  pantothenate kinase  YP_002504504  decreased coverage  2.7573e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0137  CDS  NC_011898  152422  153354  933  L-lactate dehydrogenase  YP_002504505  decreased coverage  6.68633e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0242  CDS  NC_011898  271206  272894  1689  DNA polymerase III subunits gamma and tau  YP_002504609  decreased coverage  2.27385e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0243  CDS  NC_011898  272957  273304  348  hypothetical protein  YP_002504610  decreased coverage  3.66291e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0277  CDS  NC_011898  311987  315943  3957  Fibronectin type III domain protein  YP_002504644  decreased coverage  0.00538215  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0314  CDS  NC_011898  365219  365461  243  ribosomal protein L7Ae/L30e/S12e/Gadd45  YP_002504681  decreased coverage  2.36555e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0315  CDS  NC_011898  365540  365968  429  30S ribosomal protein S12  YP_002504682  decreased coverage  4.51595e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0326  CDS  NC_011898  376518  377540  1023  ATP:guanido phosphotransferase  YP_002504693  decreased coverage  6.12503e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0327  CDS  NC_011898  377562  379994  2433  ATPase AAA-2 domain protein  YP_002504694  decreased coverage  0.00200367  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0361  CDS  NC_011898  412913  414319  1407  histidine kinase  YP_002504726  decreased coverage  0.000148321  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0479  CDS  NC_011898  549160  550620  1461  UDP-N-acetylmuramyl-tripeptide synthetase  YP_002504841  decreased coverage  5.70069e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0512  CDS  NC_011898  592045  592548  504  peptidase A24A prepilin type IV  YP_002504874  decreased coverage  3.04579e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0594  CDS  NC_011898  685999  687285  1287  Aluminium resistance family protein  YP_002504955  decreased coverage  9.10019e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0595  CDS  NC_011898  687337  688590  1254  hypothetical protein  YP_002504956  decreased coverage  8.35136e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0596  CDS  NC_011898  688583  689290  708  alanine racemase domain protein  YP_002504957  decreased coverage  5.05441e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0598  CDS  NC_011898  689848  690138  291  protein of unknown function YGGT  YP_002504959  decreased coverage  1.92983e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0631  CDS  NC_011898  730322  730972  651  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002504992  decreased coverage  6.14273e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0633  CDS  NC_011898  731390  732193  804  hypothetical protein  YP_002504994  decreased coverage  1.60183e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0678  CDS  NC_011898  783365  784705  1341  MiaB-like tRNA modifying enzyme YliG  YP_002505038  decreased coverage  2.58003e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0679  CDS  NC_011898  784689  785309  621  CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase  YP_002505039  decreased coverage  1.20604e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0703  CDS  NC_011898  813788  814297  510  anaerobic ribonucleoside-triphosphate reductase activating protein  YP_002505062  decreased coverage  6.08251e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0710  CDS  NC_011898  822000  822245  246  30S ribosomal protein S16  YP_002505069  decreased coverage  2.78806e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0729  CDS  NC_011898  843032  845200  2169  glycoside hydrolase family 48  YP_002505088  decreased coverage  0.000900741  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0737  CDS  NC_011898  858687  860267  1581  glycoside hydrolase family 9  YP_002505096  decreased coverage  6.24089e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0780  CDS  NC_011898  905853  906620  768  methionine aminopeptidase, type I  YP_002505138  decreased coverage  3.41129e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0781  CDS  NC_011898  906728  907009  282  hypothetical protein  YP_002505139  decreased coverage  3.22443e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0782  CDS  NC_011898  907065  907283  219  translation initiation factor IF-1  YP_002505140  decreased coverage  1.98783e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0855  CDS  NC_011898  973821  974507  687  ABC transporter related  YP_002505207  decreased coverage  0.00113999  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0881  CDS  NC_011898  1058505  1059806  1302  carbohydrate-binding, CenC-like protein  YP_002505233  decreased coverage  5.27436e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0882  CDS  NC_011898  1060086  1060367  282  hypothetical protein  YP_002505234  decreased coverage  1.92983e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0888  CDS  NC_011898  1065311  1065850  540  transcriptional regulator, XRE family  YP_002505240  decreased coverage  1.18183e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_0951  CDS  NC_011898  1132664  1133962  1299  hypothetical protein  YP_002505294  decreased coverage  2.61161e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1006  CDS  NC_011898  1250623  1252134  1512  carbohydrate kinase FGGY  YP_002505348  decreased coverage  0.00908398  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1025  CDS  NC_011898  1277219  1278553  1335  extracellular solute-binding protein family 1  YP_002505367  decreased coverage  3.99953e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1174  CDS  NC_011898  1437797  1439734  1938  metallophosphoesterase  YP_002505511  decreased coverage  0.00165263  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1181  CDS  NC_011898  1444909  1446465  1557  hypothetical protein  YP_002505518  decreased coverage  0.00389861  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1182  CDS  NC_011898  1446649  1447644  996  cobalamin (vitamin B12) biosynthesis CbiM protein  YP_002505519  decreased coverage  0.00505251  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1230  CDS  NC_011898  1507375  1509000  1626  Carbohydrate binding family 6  YP_002505566  decreased coverage  0.000323294  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1235  CDS  NC_011898  1516222  1517751  1530  Carbohydrate binding family 6  YP_002505571  decreased coverage  0.00440741  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1236  CDS  NC_011898  1517840  1520707  2868  protein of unknown function DUF1680  YP_002505572  decreased coverage  0.00269962  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1311  CDS  NC_011898  1615767  1616261  495  translation initiation factor IF-3  YP_002505645  decreased coverage  6.44552e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1312  CDS  NC_011898  1616279  1616476  198  ribosomal protein L35  YP_002505646  decreased coverage  1.03845e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1313  CDS  NC_011898  1616494  1616847  354  50S ribosomal protein L20  YP_002505647  decreased coverage  2.42462e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1314  CDS  NC_011898  1616949  1618148  1200  UMUC domain protein DNA-repair protein  YP_002505648  decreased coverage  1.31963e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1347  CDS  NC_011898  1645499  1646098  600  Holliday junction DNA helicase RuvA  YP_002505681  decreased coverage  1.19387e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1348  CDS  NC_011898  1646193  1647200  1008  Holliday junction DNA helicase RuvB  YP_002505682  decreased coverage  7.29469e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1349  CDS  NC_011898  1647322  1647837  516  protein of unknown function DUF208  YP_002505683  decreased coverage  5.16644e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1392  CDS  NC_011898  1692770  1694011  1242  coenzyme F390 synthetase  YP_002505726  decreased coverage  3.46033e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1404  CDS  NC_011898  1707355  1707852  498  protein of unknown function DUF988  YP_002505738  decreased coverage  9.40341e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1412  CDS  NC_011898  1715274  1715843  570  protein of unknown function DUF204  YP_002505746  decreased coverage  0.000313106  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1413  CDS  NC_011898  1715954  1717936  1983  excinuclease ABC subunit B  YP_002505747  decreased coverage  9.81349e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1422  CDS  NC_011898  1725971  1727113  1143  antifreeze protein type I  YP_002505756  decreased coverage  9.08781e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1455  CDS  NC_011898  1767945  1768253  309  TrpR like protein, YerC/YecD  YP_002505789  decreased coverage  0.00161853  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1475  CDS  NC_011898  1790442  1791425  984  hypothetical protein  YP_002505809  decreased coverage  5.25519e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1551  CDS  NC_011898  1900747  1902498  1752  glycoside hydrolase family 26  YP_002505883  decreased coverage  3.98696e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1655  CDS  NC_011898  1995887  1997194  1308  cellulosome protein dockerin type I  YP_002505986  decreased coverage  3.88378e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1691  CDS  NC_011898  2035278  2037344  2067  NADH/Ubiquinone/plastoquinone (complex I)  YP_002506022  decreased coverage  1.43823e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1700  CDS  NC_011898  2046714  2047268  555  GCN5-related N-acetyltransferase  YP_002506031  decreased coverage  4.69355e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1701  CDS  NC_011898  2047425  2047853  429  thioesterase superfamily protein  YP_002506032  decreased coverage  6.49367e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1718  CDS  NC_011898  2065134  2067038  1905  copper amine oxidase domain protein  YP_002506049  decreased coverage  5.57029e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1768  CDS  NC_011898  2115803  2117542  1740  extracellular solute-binding protein family 5  YP_002506099  decreased coverage  4.49992e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1804  CDS  NC_011898  2158134  2159279  1146  deoxyguanosinetriphosphate triphosphohydrolase  YP_002506134  decreased coverage  0.00796527  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1805  CDS  NC_011898  2159357  2159872  516  hypothetical protein  YP_002506135  decreased coverage  0.00543829  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1836  CDS  NC_011898  2189066  2190655  1590  transposase IS66  YP_002506164  decreased coverage  0.000394472  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1861  CDS  NC_011898  2214454  2215758  1305  homocysteine S-methyltransferase  YP_002506189  decreased coverage  2.68518e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1866  CDS  NC_011898  2221290  2221928  639  glycoside hydrolase family 11  YP_002506194  decreased coverage  2.21403e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1893  CDS  NC_011898  2249189  2249524  336  SH3 type 3 domain protein  YP_002506221  decreased coverage  4.10016e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_1929  CDS  NC_011898  2278722  2280281  1560  hypothetical protein  YP_002506257  decreased coverage  0.000121608  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2001  CDS  NC_011898  2364565  2365497  933  Mg2 transporter protein CorA family protein  YP_002506329  decreased coverage  5.39892e-07  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2088  CDS  NC_011898  2446753  2447532  780  hypothetical protein  YP_002506413  decreased coverage  0.0013541  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2147  CDS  NC_011898  2515714  2516139  426  hypothetical protein  YP_002506470  decreased coverage  0.00282201  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2169  CDS  NC_011898  2539242  2539607  366  carbohydrate-binding family 25 protein  YP_002506491  decreased coverage  5.39346e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2170  CDS  NC_011898  2539707  2540876  1170  SAM dependent methyltransferase  YP_002506492  decreased coverage  0.000185773  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2172  CDS  NC_011898  2541671  2543086  1416  RNA methylase, NOL1/NOP2/sun family  YP_002506494  decreased coverage  0.000128077  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2173  CDS  NC_011898  2543503  2543985  483  RNA polymerase, sigma-24 subunit, ECF subfamily  YP_002506495  decreased coverage  1.02699e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2239  CDS  NC_011898  2618414  2618842  429  Holliday junction resolvase-like protein  YP_002506561  decreased coverage  1.40275e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2276  CDS  NC_011898  2658511  2659422  912  hypothetical protein  YP_002506593  decreased coverage  1.01382e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2393  CDS  NC_011898  2876269  2877837  1569  S-layer domain protein  YP_002506706  decreased coverage  2.124e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2488  CDS  NC_011898  3008046  3009743  1698  DEAD/DEAH box helicase domain protein  YP_002506796  decreased coverage  0.000211561  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2530  CDS  NC_011898  3056289  3057527  1239  Ricin B lectin  YP_002506838  decreased coverage  0.00551776  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2568  CDS  NC_011898  3089763  3092102  2340  ATP-dependent protease La  YP_002506876  decreased coverage  0.00834227  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2574  CDS  NC_011898  3098672  3100066  1395  asparaginyl-tRNA synthetase  YP_002506882  decreased coverage  3.72137e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2583  CDS  NC_011898  3116273  3117742  1470  hypothetical protein  YP_002506891  decreased coverage  1.11213e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2831  CDS  NC_011898  3387003  3387323  321  phage head-tail adaptor  YP_002507105  decreased coverage  0.00173127  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2851  CDS  NC_011898  3404621  3405055  435  hypothetical protein  YP_002507125  decreased coverage  8.35873e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2886  CDS  NC_011898  3442650  3444134  1485  methyl-accepting chemotaxis sensory transducer  YP_002507160  decreased coverage  8.63284e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2930  CDS  NC_011898  3488779  3490026  1248  TPR/glycosyl transferase domain-containing protein  YP_002507204  decreased coverage  2.83955e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2998  CDS  NC_011898  3549661  3550131  471  transposase IS200-family protein  YP_002507272  decreased coverage  5.70357e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_2999  CDS  NC_011898  3550337  3551347  1011  transcriptional regulator, LacI family  YP_002507273  decreased coverage  1.04253e-06  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_3025  CDS  NC_011898  3578215  3578916  702  peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin  YP_002507297  decreased coverage  2.3903e-08  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_3056  CDS  NC_011898  3600542  3600802  261  VRR-NUC domain protein  YP_002507328  decreased coverage  2.60708e-05  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_3097  CDS  NC_011898  3633928  3634356  429  (3R)-hydroxymyristoyl-ACP dehydratase  YP_002507369  decreased coverage  4.14078e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_3133  CDS  NC_011898  3673267  3673758  492  hypothetical protein  YP_002507404  decreased coverage  2.8978e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
Ccel_3134  CDS  NC_011898  3673755  3674171  417  hypothetical protein  YP_002507405  decreased coverage  2.48308e-09  n/a    Clostridium cellulolyticum H10  Bacteria 
 
 
-
 
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