45 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Swit_0044  CDS  NC_009511  45783  46568  786  hypothetical protein  YP_001260555  decreased coverage  1.23179e-05  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0045  CDS  NC_009511  46707  46979  273  histone family protein DNA-binding protein  YP_001260556  decreased coverage  1.65888e-06  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0046  CDS  NC_009511  47310  47702  393  hypothetical protein  YP_001260557  decreased coverage  2.35341e-06  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0047  CDS  NC_009511  47725  47925  201  YcfA family protein  YP_001260558  decreased coverage  4.25869e-07  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0329  CDS  NC_009511  350535  351617  1083  hypothetical protein  YP_001260838  decreased coverage  0.0029643  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0608  CDS  NC_009511  662645  663517  873  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_001261114  decreased coverage  0.00662923  normal  0.431033  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0711  CDS  NC_009511  782712  784787  2076  hypothetical protein  YP_001261216  normal  decreased coverage  0.000978067  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0712  CDS  NC_009511  784841  785983  1143  aldo/keto reductase  YP_001261217  normal  decreased coverage  0.000693877  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_0713  CDS  NC_009511  785980  786372  393  hypothetical protein  YP_001261218  normal  decreased coverage  0.000499779  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_0714  CDS  NC_009511  786827  789169  2343  TonB-dependent receptor  YP_001261219  normal  0.116243  decreased coverage  0.000166351  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_0715  CDS  NC_009511  789240  790934  1695  amidohydrolase 3  YP_001261220  normal  0.993176  decreased coverage  0.000630389  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_0905  CDS  NC_009511  996576  998822  2247  TonB-dependent receptor, plug  YP_001261410  decreased coverage  9.1536e-08  normal  0.106879  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1435  CDS  NC_009511  1578286  1578894  609  SNARE associated Golgi protein  YP_001261937  hitchhiker  0.000156702  decreased coverage  0.000261969  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1436  CDS  NC_009511  1579132  1581381  2250  TonB-dependent receptor  YP_001261938  decreased coverage  3.58025e-10  decreased coverage  1.02915e-05  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1542  CDS  NC_009511  1716266  1717366  1101  Rieske (2Fe-2S) domain-containing protein  YP_001262043  normal  0.0106115  decreased coverage  0.000412121  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1656  CDS  NC_009511  1841254  1843548  2295  TonB-dependent receptor  YP_001262157  unclonable  3.45148e-11  decreased coverage  0.00188078  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1776  CDS  NC_009511  1990030  1992234  2205  TonB-dependent receptor  YP_001262276  decreased coverage  0.00365566  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1854  CDS  NC_009511  2073703  2074476  774  short-chain dehydrogenase/reductase SDR  YP_001262352  decreased coverage  0.00947087  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_1891  CDS  NC_009511  2118643  2119440  798  GntR family transcriptional regulator  YP_001262389  decreased coverage  0.00390754  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_2300  CDS  NC_009511  2556819  2559011  2193  TonB-dependent receptor  YP_001262797  decreased coverage  7.40519e-09  hitchhiker  0.000350666  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_2301  CDS  NC_009511  2559528  2561720  2193  TonB-dependent receptor  YP_001262798  hitchhiker  0.00156441  decreased coverage  7.05013e-05  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_2416  CDS  NC_009511  2684885  2686993  2109  amidohydrolase  YP_001262913  decreased coverage  0.0066037  normal  0.0385776  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_2569  CDS  NC_009511  2849886  2850266  381  hypothetical protein  YP_001263065  normal  decreased coverage  0.00822826  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_2570  CDS  NC_009511  2850282  2850968  687  glutathione S-transferase domain-containing protein  YP_001263066  normal  decreased coverage  0.00976958  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3044  CDS  NC_009511  3339647  3341974  2328  TonB-dependent receptor  YP_001263532  decreased coverage  8.26445e-10  unclonable  1.13602e-06  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3254  CDS  NC_009511  3582523  3583680  1158  amine dehydrogenase  YP_001263738  hitchhiker  8.0765e-06  decreased coverage  0.00024338  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3255  CDS  NC_009511  3583703  3584077  375  cytochrome c, class I  YP_001263739  hitchhiker  4.74848e-09  decreased coverage  0.000193536  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_3256  CDS  NC_009511  3584104  3586296  2193  TonB-dependent receptor  YP_001263740  unclonable  3.66625e-11  decreased coverage  7.30384e-05  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3257  CDS  NC_009511  3586507  3587130  624  TetR family transcriptional regulator  YP_001263741  hitchhiker  2.55027e-08  decreased coverage  0.000226088  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3258  CDS  NC_009511  3587266  3587739  474  AsnC family transcriptional regulator  YP_001263742  hitchhiker  6.50696e-08  decreased coverage  0.000218809  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3259  CDS  NC_009511  3587783  3588058  276  hypothetical protein  YP_001263743  hitchhiker  6.03126e-07  decreased coverage  0.000199987  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3260  CDS  NC_009511  3588078  3588743  666  alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen  YP_001263744  hitchhiker  6.52947e-06  decreased coverage  0.000228018  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3395  CDS  NC_009511  3724212  3726353  2142  TonB-dependent receptor  YP_001263879  decreased coverage  0.000531057  normal  0.0390865  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3396  CDS  NC_009511  3726429  3727475  1047  vanillate monooxygenase  YP_001263880  decreased coverage  0.00111775  normal  0.0140003  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3397  CDS  NC_009511  3727522  3728733  1212  acyl-CoA dehydrogenase domain-containing protein  YP_001263881  hitchhiker  0.00717177  decreased coverage  0.00584794  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_3398  CDS  NC_009511  3728741  3729841  1101  acyl-CoA dehydrogenase domain-containing protein  YP_001263882  normal  0.157056  decreased coverage  0.00584794  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4125  CDS  NC_009511  4528314  4530569  2256  TonB-dependent receptor  YP_001264604  decreased coverage  8.75615e-10  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4197  CDS  NC_009511  4619006  4621114  2109  TonB-dependent receptor  YP_001264675  decreased coverage  5.40128e-05  normal  0.065151  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4241  CDS  NC_009511  4673936  4674931  996  luciferase family protein  YP_001264719  decreased coverage  0.00842618  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4537  CDS  NC_009511  4990108  4990902  795  metallophosphoesterase  YP_001265013  decreased coverage  9.38164e-05  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4538  CDS  NC_009511  4990899  4991675  777  hypothetical protein  YP_001265014  decreased coverage  0.00314949  normal  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_4753  CDS  NC_009511  5230903  5231793  891  cation diffusion facilitator family transporter  YP_001265228  normal  0.36054  decreased coverage  0.00983844  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4770  CDS  NC_009511  5249324  5250394  1071  chorismate synthase  YP_001265245  decreased coverage  0.00112305  normal  0.0417622  Sphingomonas wittichii RW1  Bacteria 
 
 
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Swit_4771  CDS  NC_009511  5250391  5250690  300  acylphosphatase  YP_001265246  decreased coverage  0.000297446  normal  0.0367606  Sphingomonas wittichii RW1  Bacteria 
 
 
-
 
Swit_4772  CDS  NC_009511  5250687  5251460  774  hypothetical protein  YP_001265247  decreased coverage  0.00107349  normal  0.0417622  Sphingomonas wittichii RW1  Bacteria 
 
 
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