28 decreased-coverage genes were found for selected organism/s



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Locus tag
Gene type
Replicon accession
From
To
Strand
Gene Length
Product
Protein accession
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Organism name
Kingdom
Coverage Plot
PanDaTox homologs
Experimental validation
Bphy_3196  CDS  NC_010623  105992  107077  -  1086  outer membrane protein (porin)  YP_001859402  decreased coverage  0.00143868  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_3224  CDS  NC_010623  135815  136975  -  1161  amidohydrolase 2  YP_001859430  decreased coverage  0.0000120093  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_3618  CDS  NC_010623  566700  568439  -  1740  putative oxalyl-CoA decarboxylase  YP_001859803  decreased coverage  0.000526627  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_3753  CDS  NC_010623  713058  713420  +  363  hypothetical protein  YP_001859930  decreased coverage  0.000000000459943  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_3850  CDS  NC_010623  819947  820666  -  720  histone family protein nucleoid-structuring protein H-NS  YP_001860027  decreased coverage  0.000396096  normal  0.523489  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_3877    NC_010623  850308  851454  -  1147      decreased coverage  0.000000150245  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4051  CDS  NC_010623  1045894  1046853  -  960  beta-lactamase domain-containing protein  YP_001860220  decreased coverage  0.00000219811  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4145  CDS  NC_010623  1136384  1137493  +  1110  hypothetical protein  YP_001860312  decreased coverage  0.00000490948  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4494  CDS  NC_010623  1538728  1539852  +  1125  secretion protein HlyD family protein  YP_001860653  decreased coverage  0.001486  normal  0.244602  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4629  CDS  NC_010623  1697004  1698071  +  1068  purine nucleoside permease  YP_001860785  decreased coverage  0.00101608  normal  0.109746  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4636  CDS  NC_010623  1706593  1708158  +  1566  RND efflux system outer membrane lipoprotein  YP_001860792  decreased coverage  0.00362376  normal  0.387542  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4715  CDS  NC_010623  1779321  1780730  +  1410  6-phosphogluconate dehydrogenase  YP_001860870  normal  0.246176  decreased coverage  0.00597476  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4744  CDS  NC_010623  1811460  1812887  +  1428  transcriptional regulator  YP_001860899  decreased coverage  0.0066637  normal  0.499437  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4837  CDS  NC_010623  1901647  1902762  +  1116  2-nitropropane dioxygenase NPD  YP_001860989  decreased coverage  0.0000132292  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_4842  CDS  NC_010623  1907957  1909387  +  1431  amidase  YP_001860994  decreased coverage  0.00703489  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5027  CDS  NC_010623  2123338  2124873  -  1536  diguanylate cyclase  YP_001861163  decreased coverage  0.00146461  normal  0.392171  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5028  CDS  NC_010623  2124873  2126786  -  1914  diguanylate cyclase/phosphodiesterase  YP_001861164  decreased coverage  0.00518109  normal  0.939284  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5073  CDS  NC_010623  2171070  2171372  +  303  hypothetical protein  YP_001861206  decreased coverage  0.000000000482647  normal  0.206823  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5095  CDS  NC_010623  2198478  2200199  +  1722  pyruvate dehydrogenase  YP_001861228  normal  1  decreased coverage  0.0038503  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5096  CDS  NC_010623  2200252  2200566  +  315  hypothetical protein  YP_001861229  normal  0.183418  decreased coverage  0.00205105  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5100  CDS  NC_010623  2202973  2203842  +  870  extracellular solute-binding protein  YP_001861233  normal  0.0295022  decreased coverage  0.00240656  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5101  CDS  NC_010623  2203950  2204672  +  723  polar amino acid ABC transporter, inner membrane subunit  YP_001861234  normal  0.0381438  decreased coverage  0.00220155  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5102  CDS  NC_010623  2204688  2205440  +  753  polar amino acid ABC transporter, inner membrane subunit  YP_001861235  decreased coverage  0.00180467  decreased coverage  0.00233971  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5322  CDS  NC_010623  2460181  2460468  +  288  putative lipoprotein  YP_001861446  normal  0.0697034  decreased coverage  0.000269029  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5323  CDS  NC_010623  2460565  2461767  +  1203  response regulator receiver protein  YP_001861447  decreased coverage  0.00097101  decreased coverage  0.00042828  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5324  CDS  NC_010623  2461808  2463196  +  1389  type II secretion system protein E  YP_001861448  normal  0.0350722  decreased coverage  0.000466022  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5503  CDS  NC_010623  2654475  2655812  +  1338  RND family efflux transporter MFP subunit  YP_001861626  decreased coverage  0.00522591  normal  1  Burkholderia phymatum STM815  Bacteria 
 
 
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Bphy_5533  CDS  NC_010623  2687189  2687632  +  444  NUDIX hydrolase  YP_001861655  normal  1  decreased coverage  0.00579175  Burkholderia phymatum STM815  Bacteria 
 
 
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