82 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bphy_0316  CDS  NC_010622  357869  358750  882  4-diphosphocytidyl-2-C-methyl-D-erythritol kinase  YP_001856555  decreased coverage  0.00626932  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0489  CDS  NC_010622  557071  557853  783  sorbitol dehydrogenase  YP_001856727  decreased coverage  9.37678e-05  hitchhiker  0.00159634  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0494  CDS  NC_010622  562070  563179  1110  ABC transporter related  YP_001856732  normal  0.0952416  decreased coverage  0.000489409  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0564  CDS  NC_010622  638815  639384  570  pseudouridine synthase  YP_001856802  hitchhiker  0.00757651  decreased coverage  7.39028e-05  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0565  CDS  NC_010622  639716  640972  1257  isocitrate dehydrogenase  YP_001856803  hitchhiker  0.000686773  decreased coverage  0.000103322  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0795  CDS  NC_010622  892538  893938  1401  fumarate hydratase  YP_001857030  decreased coverage  0.00749677  normal  0.0712325  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0807  CDS  NC_010622  905529  905852  324  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001857042  decreased coverage  3.83112e-10  normal  0.414836  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0818  CDS  NC_010622  916407  919685  3279  ribonuclease  YP_001857053  decreased coverage  0.00158382  normal  0.513461  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0851  CDS  NC_010622  949920  952142  2223  excinuclease ABC subunit C  YP_001857086  decreased coverage  0.00444649  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_0871  CDS  NC_010622  970823  972508  1686  lytic transglycosylase catalytic  YP_001857106  decreased coverage  0.000448288  normal  0.420997  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1012  CDS  NC_010622  1134547  1135818  1272  ATP-dependent protease ATP-binding subunit ClpX  YP_001857247  decreased coverage  0.00708738  normal  0.963752  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1326  CDS  NC_010622  1484972  1485760  789  UDP-N-acetylglucosamine acyltransferase  YP_001857554  decreased coverage  0.000759868  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1406  CDS  NC_010622  1582366  1584708  2343  RNA-binding S1 domain-containing protein  YP_001857634  normal  0.252881  decreased coverage  8.74326e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1407  CDS  NC_010622  1584877  1586763  1887  K potassium transporter  YP_001857635  normal  0.196511  decreased coverage  7.31332e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1466  CDS  NC_010622  1646785  1647948  1164  peptidase S11 D-alanyl-D-alanine carboxypeptidase 1  YP_001857694  decreased coverage  0.00347318  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1489  CDS  NC_010622  1684811  1686190  1380  N-acetylglutamate synthase  YP_001857717  decreased coverage  0.00249644  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1702  CDS  NC_010622  1942095  1943012  918  dehydratase  YP_001857930  decreased coverage  0.00665806  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1906  CDS  NC_010622  2155899  2156918  1020  GP60  YP_001858131  decreased coverage  7.38533e-07  normal  0.0210495  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1907  CDS  NC_010622  2156915  2157226  312  hypothetical protein  YP_001858132  decreased coverage  4.33539e-08  normal  0.0286753  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_1995  CDS  NC_010622  2245007  2245303  297  hypothetical protein  YP_001858220  decreased coverage  0.0084371  normal  0.265781  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2163  CDS  NC_010622  2425126  2425902  777  cationic amino acid ABC transporter, periplasmic binding protein  YP_001858384  normal  0.0442479  decreased coverage  1.59985e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2166  CDS  NC_010622  2427660  2428445  786  ABC transporter related  YP_001858387  decreased coverage  4.02922e-08  hitchhiker  2.71628e-07  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2190  CDS  NC_010622  2458493  2459146  654  OmpA/MotB domain-containing protein  YP_001858411  decreased coverage  0.000129773  normal  0.4125  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2206  CDS  NC_010622  2480314  2481315  1002  putative threonine-phosphate decarboxylase  YP_001858427  decreased coverage  0.00487781  normal  0.816406  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2207  CDS  NC_010622  2481321  2482232  912  periplasmic binding protein  YP_001858428  decreased coverage  0.00190614  normal  0.612299  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2653  CDS  NC_010622  2993037  2994029  993  polyprenyl synthetase  YP_001858871  decreased coverage  0.00415418  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2688  CDS  NC_010622  3040821  3041597  777  enoyl-CoA hydratase  YP_001858906  decreased coverage  3.87614e-09  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2839  CDS  NC_010622  3179622  3180242  621  50S ribosomal protein L4  YP_001859057  decreased coverage  1.69968e-08  normal  0.198819  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2981  CDS  NC_010622  3339704  3340006  303  histone family protein nucleoid-structuring protein H-NS  YP_001859197  normal  0.207499  decreased coverage  4.17224e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_2982  CDS  NC_010622  3340296  3341045  750  aquaporin Z  YP_001859198  normal  0.727537  decreased coverage  6.21179e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3196  CDS  NC_010623  105992  107077  1086  outer membrane protein (porin)  YP_001859402  decreased coverage  0.00143868  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3224  CDS  NC_010623  135815  136975  1161  amidohydrolase 2  YP_001859430  decreased coverage  1.20093e-05  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3618  CDS  NC_010623  566700  568439  1740  putative oxalyl-CoA decarboxylase  YP_001859803  decreased coverage  0.000526627  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3753  CDS  NC_010623  713058  713420  363  hypothetical protein  YP_001859930  decreased coverage  4.59943e-10  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3850  CDS  NC_010623  819947  820666  720  histone family protein nucleoid-structuring protein H-NS  YP_001860027  decreased coverage  0.000396096  normal  0.523489  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_3877    NC_010623  850308  851454  1147      decreased coverage  1.50245e-07  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4051  CDS  NC_010623  1045894  1046853  960  beta-lactamase domain-containing protein  YP_001860220  decreased coverage  2.19811e-06  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4145  CDS  NC_010623  1136384  1137493  1110  hypothetical protein  YP_001860312  decreased coverage  4.90948e-06  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4494  CDS  NC_010623  1538728  1539852  1125  secretion protein HlyD family protein  YP_001860653  decreased coverage  0.001486  normal  0.244602  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4629  CDS  NC_010623  1697004  1698071  1068  purine nucleoside permease  YP_001860785  decreased coverage  0.00101608  normal  0.109746  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4636  CDS  NC_010623  1706593  1708158  1566  RND efflux system outer membrane lipoprotein  YP_001860792  decreased coverage  0.00362376  normal  0.387542  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4715  CDS  NC_010623  1779321  1780730  1410  6-phosphogluconate dehydrogenase  YP_001860870  normal  0.246176  decreased coverage  0.00597476  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4744  CDS  NC_010623  1811460  1812887  1428  transcriptional regulator  YP_001860899  decreased coverage  0.0066637  normal  0.499437  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4837  CDS  NC_010623  1901647  1902762  1116  2-nitropropane dioxygenase NPD  YP_001860989  decreased coverage  1.32292e-05  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_4842  CDS  NC_010623  1907957  1909387  1431  amidase  YP_001860994  decreased coverage  0.00703489  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5027  CDS  NC_010623  2123338  2124873  1536  diguanylate cyclase  YP_001861163  decreased coverage  0.00146461  normal  0.392171  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5028  CDS  NC_010623  2124873  2126786  1914  diguanylate cyclase/phosphodiesterase  YP_001861164  decreased coverage  0.00518109  normal  0.939284  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5073  CDS  NC_010623  2171070  2171372  303  hypothetical protein  YP_001861206  decreased coverage  4.82647e-10  normal  0.206823  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5095  CDS  NC_010623  2198478  2200199  1722  pyruvate dehydrogenase  YP_001861228  normal  decreased coverage  0.0038503  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5096  CDS  NC_010623  2200252  2200566  315  hypothetical protein  YP_001861229  normal  0.183418  decreased coverage  0.00205105  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5100  CDS  NC_010623  2202973  2203842  870  extracellular solute-binding protein  YP_001861233  normal  0.0295022  decreased coverage  0.00240656  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5101  CDS  NC_010623  2203950  2204672  723  polar amino acid ABC transporter, inner membrane subunit  YP_001861234  normal  0.0381438  decreased coverage  0.00220155  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5102  CDS  NC_010623  2204688  2205440  753  polar amino acid ABC transporter, inner membrane subunit  YP_001861235  decreased coverage  0.00180467  decreased coverage  0.00233971  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5322  CDS  NC_010623  2460181  2460468  288  putative lipoprotein  YP_001861446  normal  0.0697034  decreased coverage  0.000269029  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5323  CDS  NC_010623  2460565  2461767  1203  response regulator receiver protein  YP_001861447  decreased coverage  0.00097101  decreased coverage  0.00042828  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5324  CDS  NC_010623  2461808  2463196  1389  type II secretion system protein E  YP_001861448  normal  0.0350722  decreased coverage  0.000466022  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5503  CDS  NC_010623  2654475  2655812  1338  RND family efflux transporter MFP subunit  YP_001861626  decreased coverage  0.00522591  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5533  CDS  NC_010623  2687189  2687632  444  NUDIX hydrolase  YP_001861655  normal  decreased coverage  0.00579175  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5698  CDS  NC_010625  189306  191663  2358  oxidoreductase alpha (molybdopterin) subunit  YP_001861816  normal  decreased coverage  0.00651083  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5949  CDS  NC_010625  472105  473124  1020  beta-ribofuranosylaminobenzene 5'-phosphate synthase  YP_001862059  normal  decreased coverage  0.00300733  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5950  CDS  NC_010625  473317  474288  972  LysR family transcriptional regulator  YP_001862060  normal  decreased coverage  0.00309473  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_5975  CDS  NC_010625  506119  507693  1575  histidine kinase  YP_001862084  decreased coverage  0.005421  normal  0.414836  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6031  CDS  NC_010625  572350  573501  1152  porin  YP_001862139  decreased coverage  0.00960697  normal  0.0888656  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6049  CDS  NC_010625  592517  594151  1635  levanase  YP_001862157  normal  0.0213879  decreased coverage  5.02192e-08  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6094  CDS  NC_010625  639900  641669  1770  fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein  YP_001862199  decreased coverage  0.00173054  normal  0.263538  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6172  CDS  NC_010625  726709  727251  543  carbonic anhydrase  YP_001862269  normal  0.0885188  decreased coverage  0.000818733  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6173  CDS  NC_010625  727366  727737  372  hypothetical protein  YP_001862270  normal  0.0933195  decreased coverage  0.000759145  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6340  CDS  NC_010625  912553  913689  1137  mannitol dehydrogenase domain-containing protein  YP_001862417  decreased coverage  0.00129843  normal  0.444524  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6341  CDS  NC_010625  913717  914727  1011  alcohol dehydrogenase  YP_001862418  decreased coverage  0.00479428  normal  0.719872  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6377  CDS  NC_010625  954203  955516  1314  protocatechuate 4,5-dioxygenase  YP_001862454  decreased coverage  0.00210676  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6378  CDS  NC_010625  955579  956121  543  hypothetical protein  YP_001862455  decreased coverage  0.00146216  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6460  CDS  NC_010625  1041107  1042522  1416  MmgE/PrpD family protein  YP_001862536  decreased coverage  0.00728409  normal  0.371072  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6633  CDS  NC_010625  1226737  1227186  450  OsmC family protein  YP_001862707  decreased coverage  7.4416e-10  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6772  CDS  NC_010625  1389693  1390457  765  histone family protein nucleoid-structuring protein H-NS  YP_001862839  decreased coverage  1.11168e-07  normal  0.0541472  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_6863  CDS  NC_010625  1493270  1494061  792  pyrroline-5-carboxylate reductase  YP_001862920  decreased coverage  0.00150835  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7122  CDS  NC_010625  1781612  1781908  297  hypothetical protein  YP_001863169  decreased coverage  0.00973934  hitchhiker  0.00026048  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7132  CDS  NC_010625  1787946  1788725  780  hypothetical protein  YP_001863179  hitchhiker  0.00325584  decreased coverage  7.04651e-07  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7133  CDS  NC_010625  1788988  1790667  1680  hypothetical protein  YP_001863180  unclonable  7.37025e-09  decreased coverage  3.53312e-07  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7308  CDS  NC_010627  76369  76932  564  hypothetical protein  YP_001863343  normal  0.385229  decreased coverage  0.000471067  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7496  CDS  NC_010627  269633  271042  1410  MmgE/PrpD family protein  YP_001863488  decreased coverage  0.000196116  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_7544  CDS  NC_010627  314667  314951  285  hypothetical protein  YP_001863529  normal  decreased coverage  0.00766626  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
Bphy_R0012  rRNA  NC_010622  3038846  3040369  1524  16S ribosomal RNA    decreased coverage  1.0553e-06  normal  Burkholderia phymatum STM815  Bacteria 
 
 
-
 
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