435 decreased-coverage genes were found for selected organism/s



Page 1 of 5    << first  < prev  1  2  3  4  5    next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Sare_0118  CDS  NC_009953  131639  132844  1206  sodium/hydrogen exchanger  YP_001535044  normal  decreased coverage  4.13782e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0119  CDS  NC_009953  132850  133350  501  TrkA domain-containing protein  YP_001535045  normal  decreased coverage  2.59945e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0120  CDS  NC_009953  133520  136111  2592  ATPase  YP_001535046  normal  decreased coverage  6.37349e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0121  CDS  NC_009953  136207  136833  627  hypothetical protein  YP_001535047  normal  decreased coverage  3.0187e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0122  CDS  NC_009953  136834  137340  507  hypothetical protein  YP_001535048  normal  decreased coverage  2.38229e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0123  CDS  NC_009953  137337  137762  426  hypothetical protein  YP_001535049  normal  0.91245  decreased coverage  2.33974e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0124  CDS  NC_009953  137799  138221  423  hypothetical protein  YP_001535050  normal  decreased coverage  2.27824e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0125  CDS  NC_009953  138269  138988  720  hypothetical protein  YP_001535051  normal  decreased coverage  2.59945e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0126  CDS  NC_009953  138985  140544  1560  spermidine synthase  YP_001535052  normal  0.597506  decreased coverage  3.89155e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0127  CDS  NC_009953  140586  141440  855  hypothetical protein  YP_001535053  normal  0.495819  decreased coverage  2.88771e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0128  CDS  NC_009953  141499  142104  606  hypothetical protein  YP_001535054  normal  0.369437  decreased coverage  2.78675e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0129  CDS  NC_009953  142113  142922  810  short-chain dehydrogenase/reductase SDR  YP_001535055  normal  decreased coverage  2.88771e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0130  CDS  NC_009953  143067  143606  540  orotate phosphoribosyltransferase  YP_001535056  normal  decreased coverage  2.51206e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0131  CDS  NC_009953  143664  144041  378  ArsR family transcriptional regulator  YP_001535057  normal  decreased coverage  2.12185e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0132  CDS  NC_009953  144196  144909  714  SNARE associated Golgi protein  YP_001535058  normal  0.365407  decreased coverage  2.35996e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0133  CDS  NC_009953  145226  145438  213  hypothetical protein  YP_001535059  normal  0.904723  decreased coverage  2.18003e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0134  CDS  NC_009953  145624  145788  165  hypothetical protein  YP_001535060  normal  0.860435  decreased coverage  2.10364e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0135  CDS  NC_009953  145801  146823  1023  fructose-bisphosphate aldolase  YP_001535061  normal  decreased coverage  3.18278e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0136  CDS  NC_009953  147013  147441  429  hypothetical protein  YP_001535062  normal  0.260123  decreased coverage  2.29934e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0137  CDS  NC_009953  147514  149274  1761  chromosome partitioning ATPase  YP_001535063  normal  0.458231  decreased coverage  4.55541e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0138  CDS  NC_009953  149344  150339  996  hypothetical protein  YP_001535064  normal  decreased coverage  3.5991e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0139  CDS  NC_009953  150467  151756  1290  adenylosuccinate synthetase  YP_001535065  normal  decreased coverage  5.61019e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0140  CDS  NC_009953  151822  153072  1251  phosphoribosylamine--glycine ligase  YP_001535066  normal  decreased coverage  3.76127e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0141  CDS  NC_009953  153113  154549  1437  major facilitator transporter  YP_001535067  normal  decreased coverage  4.28453e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0142  CDS  NC_009953  154647  155861  1215  acyl-CoA dehydrogenase domain-containing protein  YP_001535068  normal  0.0485827  decreased coverage  5.21293e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0143  CDS  NC_009953  155863  156315  453  sterol-binding domain-containing protein  YP_001535069  normal  0.110171  decreased coverage  2.48953e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0144  CDS  NC_009953  156384  157058  675  TetR family transcriptional regulator  YP_001535070  normal  0.522541  decreased coverage  2.64507e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0145  CDS  NC_009953  157101  157718  618  SNARE associated Golgi protein  YP_001535071  normal  0.34371  decreased coverage  2.15916e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0146  CDS  NC_009953  157762  158682  921  dehydratase  YP_001535072  normal  0.861571  decreased coverage  2.40434e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0147  CDS  NC_009953  158682  160037  1356  3-ketoacyl-(acyl-carrier-protein) reductase  YP_001535073  normal  0.797973  decreased coverage  2.99289e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0148  CDS  NC_009953  160093  161385  1293  acetyl-CoA acetyltransferase  YP_001535074  normal  decreased coverage  4.26829e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0181  CDS  NC_009953  195313  195675  363  hypothetical protein  YP_001535107  normal  0.251408  decreased coverage  0.000137269  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0182  CDS  NC_009953  196483  197361  879  hypothetical protein  YP_001535108  normal  0.527413  decreased coverage  0.000166477  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0183  CDS  NC_009953  197656  198504  849  abortive infection protein  YP_001535109  normal  0.661015  decreased coverage  0.000162176  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0186  CDS  NC_009953  200141  202180  2040  copper resistance D domain-containing protein  YP_001535112  normal  decreased coverage  0.000295959  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0187  CDS  NC_009953  202284  202946  663  DSBA oxidoreductase  YP_001535113  normal  decreased coverage  0.000166477  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0188  CDS  NC_009953  202943  203578  636  vitamin K epoxide reductase  YP_001535114  normal  decreased coverage  0.000145856  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0189  CDS  NC_009953  203615  203797  183  hypothetical protein  YP_001535115  normal  decreased coverage  0.00012152  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0190  CDS  NC_009953  203807  205222  1416  nitrate/nitrite transporter-like protein  YP_001535116  normal  decreased coverage  0.00020327  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0191  CDS  NC_009953  205219  206637  1419  major facilitator transporter  YP_001535117  normal  decreased coverage  0.000226974  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0234  CDS  NC_009953  264284  264778  495  hypothetical protein  YP_001535160  normal  decreased coverage  0.000632283  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0235  CDS  NC_009953  264860  265576  717  hypothetical protein  YP_001535161  normal  decreased coverage  0.000648077  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0236  CDS  NC_009953  265560  266768  1209  major facilitator transporter  YP_001535162  normal  decreased coverage  0.00072705  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0237  CDS  NC_009953  267253  268032  780  methyltransferase type 11  YP_001535163  normal  0.635147  decreased coverage  0.000545483  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0238  CDS  NC_009953  268080  269504  1425  aldehyde dehydrogenase  YP_001535164  normal  0.851453  decreased coverage  0.000681524  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0239    NC_009953  269747  269985  239      normal  decreased coverage  0.000395397  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0241  CDS  NC_009953  270757  271116  360  ArsR family transcriptional regulator  YP_001535166  normal  decreased coverage  0.000436096  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0260  CDS  NC_009953  287992  288465  474  hypothetical protein  YP_001535183  normal  0.061234  decreased coverage  0.000404846  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0261  CDS  NC_009953  288447  289091  645  hypothetical protein  YP_001535184  normal  0.0161313  decreased coverage  0.000404846  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0262  CDS  NC_009953  289200  290702  1503  EmrB/QacA family drug resistance transporter  YP_001535185  normal  0.0858399  decreased coverage  0.0004758  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0263  CDS  NC_009953  290768  292522  1755  2-isopropylmalate synthase  YP_001535186  hitchhiker  0.00953684  decreased coverage  0.000495197  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0311  CDS  NC_009953  345675  347297  1623  chaperonin GroEL  YP_001535232  normal  decreased coverage  4.47633e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0447  CDS  NC_009953  512289  514415  2127  ATP-dependent DNA helicase RecQ  YP_001535367  normal  0.0452326  decreased coverage  6.47403e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0448  CDS  NC_009953  514420  514833  414  XRE family transcriptional regulator  YP_001535368  normal  0.242028  decreased coverage  3.14035e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0449  CDS  NC_009953  515046  516224  1179  hypothetical protein  YP_001535369  normal  0.114768  decreased coverage  4.34601e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0450  CDS  NC_009953  516394  518040  1647  DEAD/DEAH box helicase domain-containing protein  YP_001535370  normal  decreased coverage  4.80349e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0451  CDS  NC_009953  518649  518876  228  hypothetical protein  YP_001535371  normal  0.666499  decreased coverage  2.37564e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0452  CDS  NC_009953  518941  519579  639  TetR family transcriptional regulator  YP_001535372  normal  0.681881  decreased coverage  2.97509e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0453  CDS  NC_009953  519725  521992  2268  hypothetical protein  YP_001535373  normal  0.968901  decreased coverage  5.55714e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0454  CDS  NC_009953  522140  523321  1182  molybdopterin biosynthesis-like protein MoeZ  YP_001535374  normal  0.427252  decreased coverage  3.25534e-06  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0501  CDS  NC_009953  570992  572581  1590  major facilitator transporter  YP_001535421  normal  0.406138  decreased coverage  0.00103191  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0502  CDS  NC_009953  572667  573506  840  hypothetical protein  YP_001535422  normal  0.498242  decreased coverage  0.000751962  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0503  CDS  NC_009953  573525  573770  246  hypothetical protein  YP_001535423  normal  decreased coverage  0.000564346  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0504  CDS  NC_009953  573860  575332  1473  xanthine/uracil/vitamin C permease  YP_001535424  normal  decreased coverage  0.000228802  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0510  CDS  NC_009953  579705  580832  1128  phosphoserine aminotransferase  YP_001535430  decreased coverage  0.00655495  hitchhiker  0.00256557  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0513  CDS  NC_009953  583075  584367  1293  major facilitator transporter  YP_001535433  normal  0.629333  decreased coverage  0.000815548  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0514  CDS  NC_009953  584385  585368  984  aldose 1-epimerase  YP_001535434  normal  0.165305  decreased coverage  0.000622322  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0515  CDS  NC_009953  585325  585927  603  nitroreductase  YP_001535435  normal  0.303234  decreased coverage  0.000536484  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0516  CDS  NC_009953  586115  586450  336  hypothetical protein  YP_001535436  normal  0.307623  decreased coverage  0.000464389  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0517  CDS  NC_009953  586455  587615  1161  acyl-CoA dehydrogenase domain-containing protein  YP_001535437  normal  0.602895  decreased coverage  0.000687036  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0518  CDS  NC_009953  587811  589208  1398  L-serine dehydratase 1  YP_001535438  normal  0.166535  decreased coverage  0.000152397  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0560  CDS  NC_009953  638120  638965  846  AraC family transcriptional regulator  YP_001535480  normal  decreased coverage  3.76127e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0576  CDS  NC_009953  656264  657361  1098  FAD dependent oxidoreductase  YP_001535495  decreased coverage  0.00335958  normal  0.200985  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0641  CDS  NC_009953  722406  723155  750  hypothetical protein  YP_001535554  normal  0.60758  decreased coverage  0.000709703  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0645  CDS  NC_009953  726206  727240  1035  thiamine pyrophosphate binding domain-containing protein  YP_001535558  normal  0.159967  decreased coverage  0.000875806  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0646  CDS  NC_009953  727233  729080  1848  pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein  YP_001535559  normal  0.478699  decreased coverage  0.000910041  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0709  CDS  NC_009953  788069  789217  1149  hypothetical protein  YP_001535619  normal  0.878616  decreased coverage  3.07412e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0710  CDS  NC_009953  789210  790139  930  respiratory-chain NADH dehydrogenase subunit 1  YP_001535620  normal  0.98531  decreased coverage  0.000156681  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0711  CDS  NC_009953  790143  790706  564  hypothetical protein  YP_001535621  normal  0.111012  decreased coverage  0.000125843  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0712  CDS  NC_009953  790703  791005  303  NADH-ubiquinone oxidoreductase chain 4L  YP_001535622  normal  0.4929  decreased coverage  0.000114407  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0713  CDS  NC_009953  791002  792867  1866  NADH dehydrogenase (quinone)  YP_001535623  normal  decreased coverage  0.000224903  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0714  CDS  NC_009953  792872  794362  1491  proton-translocating NADH-quinone oxidoreductase, chain M  YP_001535624  normal  0.0167768  decreased coverage  0.000183119  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0720  CDS  NC_009953  801008  802690  1683  glycosyl transferase family protein  YP_001535630  normal  decreased coverage  0.000257265  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0721  CDS  NC_009953  802775  803623  849  uroporphyrin-III C/tetrapyrrole methyltransferase  YP_001535631  normal  decreased coverage  0.000183119  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0722  CDS  NC_009953  803758  805560  1803  methionyl-tRNA synthetase  YP_001535632  normal  decreased coverage  0.000318448  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0790  CDS  NC_009953  885439  887064  1626  EmrB/QacA family drug resistance transporter  YP_001535700  decreased coverage  0.004165  hitchhiker  0.00652278  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0798  CDS  NC_009953  895602  897518  1917  serine/threonine protein kinase  YP_001535708  normal  decreased coverage  1.82668e-05  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0838  CDS  NC_009953  939399  941129  1731  thiamine pyrophosphate binding domain-containing protein  YP_001535747  decreased coverage  0.00172744  normal  0.208315  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0868  CDS  NC_009953  970670  971533  864  LmbE family protein  YP_001535777  normal  decreased coverage  0.00918813  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0869  CDS  NC_009953  971618  971899  282  hypothetical protein  YP_001535778  normal  decreased coverage  0.00753492  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0969  CDS  NC_009953  1092730  1093488  759  MerR family transcriptional regulator  YP_001535872  decreased coverage  0.00256708  hitchhiker  0.0060004  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0970  CDS  NC_009953  1093557  1093859  303  antibiotic biosynthesis monooxygenase  YP_001535873  decreased coverage  0.000688718  hitchhiker  0.00467442  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0976  CDS  NC_009953  1099709  1100350  642  TrkA domain-containing protein  YP_001535879  normal  0.803978  decreased coverage  0.00042868  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0982  CDS  NC_009953  1105750  1106859  1110  monooxygenase FAD-binding  YP_001535884  normal  0.240273  decreased coverage  0.000117397  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_0983  CDS  NC_009953  1107034  1108791  1758  cytochrome c oxidase subunit I type  YP_001535885  normal  0.615245  decreased coverage  0.000770913  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_1029  CDS  NC_009953  1152577  1153143  567  hypothetical protein  YP_001535930  normal  0.0294615  decreased coverage  0.00421364  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_1030    NC_009953  1153538  1153747  210      normal  0.0714846  decreased coverage  0.0036169  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_1031  CDS  NC_009953  1153921  1154709  789  hypothetical protein  YP_001535931  normal  0.0559404  decreased coverage  0.00437234  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_1032  CDS  NC_009953  1155498  1156694  1197  cell wall anchor domain-containing protein  YP_001535932  normal  0.0114324  decreased coverage  0.00525581  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Sare_1033  CDS  NC_009953  1157040  1157195  156  hypothetical protein  YP_001535933  normal  0.0589286  decreased coverage  0.00335965  Salinispora arenicola CNS-205  Bacteria 
 
 
-
 
Page 1 of 5    << first  < prev  1  2  3  4  5    next >  last >>