61 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Tpet_0023  CDS  NC_009486  22726  23340  615  CheC, inhibitor of MCP methylation  YP_001243628  decreased coverage  1.67071e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0024  CDS  NC_009486  23337  23810  474  chemoreceptor glutamine deamidase CheD  YP_001243629  decreased coverage  1.54554e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0025  CDS  NC_009486  23828  24472  645  RNA polymerase, sigma 28 subunit, FliA/WhiG  YP_001243630  decreased coverage  4.17711e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0027  CDS  NC_009486  24758  25240  483  hypothetical protein  YP_001243632  decreased coverage  1.99805e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0028  CDS  NC_009486  25225  25890  666  hypothetical protein  YP_001243633  decreased coverage  5.02789e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0029  CDS  NC_009486  25874  26104  231  hypothetical protein  YP_001243634  decreased coverage  1.2193e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0031  CDS  NC_009486  26443  27453  1011  galactose-1-phosphate uridylyltransferase  YP_001243636  decreased coverage  2.58935e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0041  CDS  NC_009486  35569  37500  1932  glycosyl transferase family protein  YP_001243646  decreased coverage  6.12567e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0059  CDS  NC_009486  54934  55599  666  glutaredoxin-like domain-containing protein  YP_001243664  decreased coverage  0.000207157  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0107  CDS  NC_009486  99663  100850  1188  iron-containing alcohol dehydrogenase  YP_001243712  decreased coverage  0.000469096  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0155  CDS  NC_009486  147626  147847  222  hypothetical protein  YP_001243760  decreased coverage  0.000254633  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0156  CDS  NC_009486  147851  148666  816  PSP1 domain-containing protein  YP_001243761  decreased coverage  0.000326451  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0166  CDS  NC_009486  157903  158685  783  30S ribosomal protein S2  YP_001243771  decreased coverage  9.40316e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0203  CDS  NC_009486  197488  198876  1389  peptidase U62, modulator of DNA gyrase  YP_001243808  decreased coverage  0.00203968  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0274  CDS  NC_009486  259432  259944  513  rubrerythrin  YP_001243879  decreased coverage  2.07736e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0275  CDS  NC_009486  260190  260756  567  cupin 2 domain-containing protein  YP_001243880  decreased coverage  3.53927e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0330  CDS  NC_009486  310362  311372  1011  rod shape-determining protein MreB  YP_001243935  decreased coverage  9.34452e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0384  CDS  NC_009486  371743  374019  2277  hypothetical protein  YP_001243986  decreased coverage  3.55497e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0396  CDS  NC_009486  384210  385127  918  tRNA delta(2)-isopentenylpyrophosphate transferase  YP_001243998  decreased coverage  5.12804e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0397  CDS  NC_009486  385124  385888  765  hypothetical protein  YP_001243999  decreased coverage  4.47185e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0503  CDS  NC_009486  498637  499968  1332  extracellular solute-binding protein  YP_001244101  decreased coverage  4.78191e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0518  CDS  NC_009486  511384  512691  1308  ammonium transporter  YP_001244116  decreased coverage  5.97851e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0551  CDS  NC_009486  549828  550505  678  hypothetical protein  YP_001244148  decreased coverage  1.46225e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0574  CDS  NC_009486  572936  573697  762  shikimate dehydrogenase substrate binding subunit  YP_001244171  decreased coverage  6.29115e-07  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0597  CDS  NC_009486  593816  594826  1011  TRAP dicarboxylate transporter, DctP subunit  YP_001244194  decreased coverage  1.35069e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0598  CDS  NC_009486  594979  595563  585  hypothetical protein  YP_001244195  decreased coverage  4.09551e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0599  CDS  NC_009486  595548  595751  204  heavy metal transport/detoxification protein  YP_001244196  decreased coverage  6.0559e-10  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0602  CDS  NC_009486  598235  598483  249  membrane protein-like protein  YP_001244199  decreased coverage  7.88004e-10  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0603  CDS  NC_009486  598578  598757  180  YHS domain-containing protein  YP_001244200  decreased coverage  6.61026e-10  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0615  CDS  NC_009486  613977  614750  774  short-chain dehydrogenase/reductase SDR  YP_001244211  decreased coverage  0.000368197  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0616  CDS  NC_009486  614859  615806  948  ribokinase-like domain-containing protein  YP_001244212  decreased coverage  0.00109848  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0617  CDS  NC_009486  615905  616561  657  putative translaldolase  YP_001244213  decreased coverage  0.000452349  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0697  CDS  NC_009486  701561  702034  474  NADH-quinone oxidoreductase, E subunit  YP_001244293  decreased coverage  2.80605e-07  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0747  CDS  NC_009486  755472  757682  2211  primosomal protein N'  YP_001244342  decreased coverage  0.00195838  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0814  CDS  NC_009486  826142  827281  1140  ROK family protein  YP_001244409  decreased coverage  0.00162994  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0877  CDS  NC_009486  897141  898358  1218  IS605 family transposase OrfB  YP_001244471  decreased coverage  3.95057e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0878  CDS  NC_009486  898496  898744  249  hypothetical protein  YP_001244472  decreased coverage  1.13879e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0879  CDS  NC_009486  898772  899320  549  hypothetical protein  YP_001244473  decreased coverage  3.18164e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_0952  CDS  NC_009486  978210  979550  1341  Beta-glucosidase  YP_001244546  decreased coverage  3.26763e-05  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1099  CDS  NC_009486  1128498  1129250  753  CRISPR-associated Cas family protein  YP_001244689  decreased coverage  0.000187286  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1100  CDS  NC_009486  1129533  1129952  420  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001244690  decreased coverage  0.000269447  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1187  CDS  NC_009486  1208865  1209464  600  elongation factor Ts  YP_001244777  decreased coverage  0.000118419  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1189  CDS  NC_009486  1210218  1211486  1269  major facilitator transporter  YP_001244779  decreased coverage  0.00252456  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1246  CDS  NC_009486  1261079  1263946  2868  single-stranded-DNA-specific exonuclease RecJ  YP_001244836  decreased coverage  6.05261e-05  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1247  CDS  NC_009486  1263943  1264563  621  Holliday junction resolvase YqgF  YP_001244837  decreased coverage  0.00416078  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1275  CDS  NC_009486  1287221  1288381  1161  diaminopimelate decarboxylase  YP_001244865  decreased coverage  1.62613e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1375  CDS  NC_009486  1367182  1367799  618  CDP-alcohol phosphatidyltransferase  YP_001244965  decreased coverage  2.33734e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1376  CDS  NC_009486  1367832  1368563  732  ABC transporter related  YP_001244966  decreased coverage  2.64902e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1443  CDS  NC_009486  1432437  1432739  303  hypothetical protein  YP_001245032  decreased coverage  1.35812e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1444  CDS  NC_009486  1433102  1433878  777  hypothetical protein  YP_001245033  decreased coverage  8.00024e-09  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1484  CDS  NC_009486  1469308  1469973  666  ribonuclease H  YP_001245068  decreased coverage  4.43868e-05  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1486  CDS  NC_009486  1470870  1472954  2085  RND efflux transporter  YP_001245070  decreased coverage  0.0030427  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1533  CDS  NC_009486  1521058  1522125  1068  radical SAM domain-containing protein  YP_001245117  decreased coverage  1.25557e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1542  CDS  NC_009486  1532164  1534167  2004  carbohydrate binding module 27  YP_001245126  decreased coverage  0.000596448  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1552  CDS  NC_009486  1543354  1544529  1176  extracellular solute-binding protein  YP_001245135  decreased coverage  3.98035e-07  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1559  CDS  NC_009486  1554653  1557907  3255  glycoside hydrolase family protein  YP_001245142  decreased coverage  0.000116157  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1681  CDS  NC_009486  1679093  1679896  804  binding-protein-dependent transport systems inner membrane component  YP_001245262  decreased coverage  7.05466e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1691  CDS  NC_009486  1693028  1694365  1338  major facilitator transporter  YP_001245272  decreased coverage  4.99428e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1692  CDS  NC_009486  1694414  1694677  264  stage V sporulation protein S  YP_001245273  decreased coverage  1.34655e-08  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_1788  CDS  NC_009486  1798642  1799268  627  LemA family protein  YP_001245364  decreased coverage  1.75947e-06  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Tpet_R0002  tRNA  NC_009486  99548  99636  89  tRNA-Ser    decreased coverage  2.10278e-05  n/a    Thermotoga petrophila RKU-1  Bacteria 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>