62 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Fnod_0010  CDS  NC_009718  9745  10020  276  histone family protein DNA-binding protein  YP_001409540  decreased coverage  6.49518e-10  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0156  CDS  NC_009718  157447  158145  699  phosphate uptake regulator, PhoU  YP_001409680  decreased coverage  1.7852e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0168  CDS  NC_009718  172334  172693  360  RNA-binding S1 domain-containing protein  YP_001409692  decreased coverage  1.07676e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0169  CDS  NC_009718  172743  172955  213  50S ribosomal protein L31  YP_001409693  decreased coverage  4.57438e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0180  CDS  NC_009718  182580  183722  1143  membrane protein  YP_001409704  decreased coverage  4.62081e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0198  CDS  NC_009718  203241  203963  723  HisJ family histidinol phosphate phosphatase  YP_001409722  decreased coverage  5.74159e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0199  CDS  NC_009718  203998  204591  594  elongation factor Ts  YP_001409723  decreased coverage  3.00429e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0228  CDS  NC_009718  235940  236941  1002  glycosyl transferase family protein  YP_001409752  decreased coverage  8.2788e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0257  CDS  NC_009718  267698  268588  891  periplasmic binding protein  YP_001409780  decreased coverage  1.85774e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0258  CDS  NC_009718  268920  269228  309  hypothetical protein  YP_001409781  decreased coverage  3.83163e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0259  CDS  NC_009718  269285  271171  1887  ferrous iron transport protein B  YP_001409782  decreased coverage  0.00038951  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0310  CDS  NC_009718  336277  338502  2226  ATPase  YP_001409832  decreased coverage  4.12877e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0339  CDS  NC_009718  366386  367576  1191  beta-lactamase domain-containing protein  YP_001409861  decreased coverage  0.000206565  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0398  CDS  NC_009718  434252  435121  870  riboflavin biosynthesis protein RibF  YP_001409920  decreased coverage  0.00802813  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0452  CDS  NC_009718  490577  491683  1107  ROK family protein  YP_001409974  decreased coverage  0.00127145  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0453  CDS  NC_009718  491696  492301  606  uridine kinase  YP_001409975  decreased coverage  0.00211906  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0454  CDS  NC_009718  492376  493668  1293  (dimethylallyl)adenosine tRNA methylthiotransferase  YP_001409976  decreased coverage  0.000369122  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0492  CDS  NC_009718  531115  532320  1206  phosphate transporter  YP_001410013  decreased coverage  2.295e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0493  CDS  NC_009718  532335  533009  675  hypothetical protein  YP_001410014  decreased coverage  2.13235e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0531  CDS  NC_009718  586288  587448  1161  extracellular ligand-binding receptor  YP_001410051  decreased coverage  2.67349e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0532  CDS  NC_009718  587498  588796  1299  acetyl-CoA hydrolase  YP_001410052  decreased coverage  8.18274e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0541  CDS  NC_009718  597946  598323  378  regulatory protein GntR HTH  YP_001410061  decreased coverage  3.36324e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0542  CDS  NC_009718  598320  599270  951  hypothetical protein  YP_001410062  decreased coverage  3.69435e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0543  CDS  NC_009718  599492  601072  1581  phytoene dehydrogenase and related protein-like protein  YP_001410063  decreased coverage  1.16233e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0611  CDS  NC_009718  679087  679986  900  malonyl CoA-acyl carrier protein transacylase  YP_001410123  decreased coverage  6.65754e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0612  CDS  NC_009718  680010  680981  972  2-nitropropane dioxygenase NPD  YP_001410124  decreased coverage  6.94328e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0613  CDS  NC_009718  680978  681406  429  Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ  YP_001410125  decreased coverage  6.88375e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0687  CDS  NC_009718  752595  753836  1242  hypothetical protein  YP_001410199  decreased coverage  7.67082e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0762  CDS  NC_009718  835494  837050  1557  chloride channel core  YP_001410272  decreased coverage  7.75923e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0763  CDS  NC_009718  837104  838273  1170  thiamine biosynthesis protein ThiI  YP_001410273  decreased coverage  0.00421556  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_0771  CDS  NC_009718  845831  846127  297  regulatory protein ArsR  YP_001410281  decreased coverage  0.00625866  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_0901  CDS  NC_009718  975486  976607  1122  queuine tRNA-ribosyltransferase  YP_001410410  decreased coverage  2.94135e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_0907  CDS  NC_009718  983337  984269  933  methionyl-tRNA formyltransferase  YP_001410414  decreased coverage  8.22843e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1020  CDS  NC_009718  1117610  1117972  363  glycine cleavage system protein H  YP_001410527  decreased coverage  8.91205e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1062  CDS  NC_009718  1155446  1157578  2133  peptidase S8/S53 subtilisin kexin sedolisin  YP_001410567  decreased coverage  1.96875e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1078  CDS  NC_009718  1178089  1179039  951  ISCpe7, transposase  YP_001410583  decreased coverage  1.01857e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1098  CDS  NC_009718  1196903  1197886  984  hypothetical protein  YP_001410603  decreased coverage  1.90359e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1111  CDS  NC_009718  1210110  1210739  630  30S ribosomal protein S4  YP_001410615  decreased coverage  4.99385e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1112  CDS  NC_009718  1210841  1211233  393  30S ribosomal protein S11  YP_001410616  decreased coverage  1.69024e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1253  CDS  NC_009718  1353706  1354944  1239  hydroxypyruvate reductase  YP_001410757  decreased coverage  3.56699e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1260  CDS  NC_009718  1360485  1361894  1410  FeS assembly protein SufB  YP_001410764  decreased coverage  7.85433e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1261  CDS  NC_009718  1362119  1363069  951  ISCpe7, transposase  YP_001410765  decreased coverage  1.18886e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1262  CDS  NC_009718  1363194  1363379  186  hypothetical protein  YP_001410766  decreased coverage  3.95651e-10  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1263  CDS  NC_009718  1363376  1363576  201  hypothetical protein  YP_001410767  decreased coverage  4.15596e-10  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1264  CDS  NC_009718  1363638  1364441  804  hypothetical protein  YP_001410768  decreased coverage  4.72011e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1293  CDS  NC_009718  1394510  1396063  1554  phosphodiesterase  YP_001410797  decreased coverage  0.000703284  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
-
 
Fnod_1380  CDS  NC_009718  1488008  1488865  858  hypothetical protein  YP_001410884  decreased coverage  1.07649e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1435  CDS  NC_009718  1554763  1556799  2037  methyl-accepting chemotaxis sensory transducer  YP_001410936  decreased coverage  1.67242e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1458  CDS  NC_009718  1582024  1583007  984  hypothetical protein  YP_001410958  decreased coverage  0.00543246  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1459  CDS  NC_009718  1583054  1583818  765  hypothetical protein  YP_001410959  decreased coverage  0.000468004  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1526  CDS  NC_009718  1656838  1657422  585  RdgB/HAM1 family non-canonical purine NTP pyrophosphatase  YP_001411026  decreased coverage  1.78708e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1527  CDS  NC_009718  1657462  1658655  1194  imidazolonepropionase  YP_001411027  decreased coverage  1.97969e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1558  CDS  NC_009718  1696151  1697554  1404  glycoside hydrolase family protein  YP_001411058  decreased coverage  3.40299e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1559  CDS  NC_009718  1697586  1698587  1002  alanine racemase  YP_001411059  decreased coverage  6.6632e-06  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1564  CDS  NC_009718  1704070  1705806  1737  extracellular solute-binding protein  YP_001411064  decreased coverage  0.00697686  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1565  CDS  NC_009718  1705809  1706816  1008  oligopeptide/dipeptide ABC transporter, ATPase subunit  YP_001411065  decreased coverage  7.44963e-05  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1587  CDS  NC_009718  1732119  1733120  1002  regulatory protein LacI  YP_001411087  decreased coverage  1.0083e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1716  CDS  NC_009718  1870102  1870392  291  flagellar hook-basal body complex subunit FliE  YP_001411208  decreased coverage  2.89402e-10  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1717  CDS  NC_009718  1870484  1871431  948  hypothetical protein  YP_001411209  decreased coverage  6.92892e-09  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_1761  CDS  NC_009718  1916469  1917416  948  hypothetical protein  YP_001411251  decreased coverage  9.11876e-08  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_R0041  tRNA  NC_009718  1136879  1136954  76  tRNA-Phe    decreased coverage  1.84643e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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Fnod_R0043  tRNA  NC_009718  1137124  1137199  76  tRNA-Glu    decreased coverage  1.94529e-07  n/a    Fervidobacterium nodosum Rt17-B1  Bacteria 
 
 
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