78 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
HY04AAS1_0005  CDS  NC_011126  4258  5445  1188  dihydropteroate synthase  YP_002120675  decreased coverage  0.00021463  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0016  CDS  NC_011126  16463  17401  939  ribose-phosphate pyrophosphokinase  YP_002120686  decreased coverage  0.000100275  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0061  CDS  NC_011126  57534  59111  1578  RNA binding S1 domain protein  YP_002120731  decreased coverage  6.65212e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0062  CDS  NC_011126  59219  59377  159  hypothetical protein  YP_002120732  decreased coverage  2.51038e-10  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0084  CDS  NC_011126  77396  78196  801  hypothetical protein  YP_002120754  decreased coverage  7.52991e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0127  CDS  NC_011126  113775  114533  759  protein of unknown function DUF81  YP_002120797  decreased coverage  3.7107e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0141  CDS  NC_011126  126128  126970  843  diguanylate phosphodiesterase  YP_002120811  decreased coverage  2.94974e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0142  CDS  NC_011126  127113  127388  276  30S ribosomal protein S15  YP_002120812  decreased coverage  4.46428e-14  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0143  CDS  NC_011126  127391  129502  2112  polynucleotide phosphorylase/polyadenylase  YP_002120813  decreased coverage  1.02458e-08  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0151  CDS  NC_011126  135416  136501  1086  cell division protein FtsZ  YP_002120821  decreased coverage  1.69065e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0232  CDS  NC_011126  209043  209558  516  protein of unknown function DUF177  YP_002120902  decreased coverage  7.64043e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0233  CDS  NC_011126  209539  209721  183  50S ribosomal protein L32  YP_002120903  decreased coverage  4.87517e-14  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0234  CDS  NC_011126  209733  210752  1020  putative glycerol-3-phosphate acyltransferase PlsX  YP_002120904  decreased coverage  2.35642e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0259  CDS  NC_011126  231585  236276  4692  DNA-directed RNA polymerase, beta' subunit  YP_002120927  decreased coverage  0.000323762  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0264  CDS  NC_011126  240565  240879  315  30S ribosomal protein S10  YP_002120932  decreased coverage  5.821e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0298  CDS  NC_011126  257660  257899  240  hypothetical protein  YP_002120966  decreased coverage  6.7955e-14  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0309  CDS  NC_011126  269061  269960  900  Polysulphide reductase NrfD  YP_002120977  decreased coverage  8.56639e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_0313  CDS  NC_011126  273500  274255  756  RNA methyltransferase, TrmH family, group 3  YP_002120981  decreased coverage  0.000179001  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0314  CDS  NC_011126  274249  274980  732  3-deoxy-manno-octulosonate cytidylyltransferase  YP_002120982  decreased coverage  6.31041e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0343  CDS  NC_011126  302467  303213  747  uroporphyrin-III C-methyltransferase  YP_002121011  decreased coverage  0.00230836  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0388  CDS  NC_011126  341318  342337  1020  Radical SAM domain protein  YP_002121056  decreased coverage  0.00103201  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0393  CDS  NC_011126  345173  346366  1194  Radical SAM domain protein  YP_002121061  decreased coverage  0.00226682  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0416  CDS  NC_011126  360924  361532  609  hypothetical protein  YP_002121084  decreased coverage  1.16857e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0449  CDS  NC_011126  392398  392619  222  30S ribosomal protein S18  YP_002121117  decreased coverage  9.93889e-13  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0519  CDS  NC_011126  457413  458687  1275  3-isopropylmalate dehydratase large subunit  YP_002121184  decreased coverage  1.92959e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0525  CDS  NC_011126  462382  463752  1371  FAD linked oxidase domain protein  YP_002121190  decreased coverage  0.00145948  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0530  CDS  NC_011126  468289  468600  312  hypothetical protein  YP_002121195  decreased coverage  1.36385e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0531  CDS  NC_011126  468584  469345  762  hypothetical protein  YP_002121196  decreased coverage  1.72431e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0552  CDS  NC_011126  487996  488931  936  DNA replication protein DnaC  YP_002121217  decreased coverage  0.000116033  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0572  CDS  NC_011126  510183  513284  3102  acriflavin resistance protein  YP_002121237  decreased coverage  1.5454e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0574  CDS  NC_011126  514447  515730  1284  outer membrane efflux protein  YP_002121239  decreased coverage  5.81742e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0591  CDS  NC_011126  527062  528090  1029  flagellar P-ring protein  YP_002121256  decreased coverage  8.60918e-10  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0592  CDS  NC_011126  528148  529263  1116  Radical SAM domain protein  YP_002121257  decreased coverage  6.49486e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0633  CDS  NC_011126  565972  566706  735  MotA/TolQ/ExbB proton channel  YP_002121298  decreased coverage  0.00732612  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0666  CDS  NC_011126  594280  595110  831  polyferredoxin-like protein  YP_002121331  decreased coverage  2.01156e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0667  CDS  NC_011126  595205  595603  399  hypothetical protein  YP_002121332  decreased coverage  1.34127e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0689  CDS  NC_011126  620712  622466  1755  hypothetical protein  YP_002121354  decreased coverage  9.17929e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0705  CDS  NC_011126  640329  642728  2400  TonB-dependent receptor  YP_002121370  decreased coverage  0.000765865  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0753  CDS  NC_011126  683711  685612  1902  proton-translocating NADH-quinone oxidoreductase, chain L  YP_002121418  decreased coverage  4.30257e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0754  CDS  NC_011126  685613  687118  1506  proton-translocating NADH-quinone oxidoreductase, chain M  YP_002121419  decreased coverage  0.000228157  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0759  CDS  NC_011126  691743  692369  627  4Fe-4S ferredoxin iron-sulfur binding domain protein  YP_002121424  decreased coverage  2.07287e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0763  CDS  NC_011126  695042  696520  1479  proton-translocating NADH-quinone oxidoreductase, chain M  YP_002121428  decreased coverage  1.88631e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0768  CDS  NC_011126  699984  701339  1356  beta-lactamase domain protein  YP_002121433  decreased coverage  0.000108746  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0770  CDS  NC_011126  701425  702564  1140  hypothetical protein  YP_002121435  decreased coverage  0.00310249  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0808  CDS  NC_011126  749694  749993  300  histone family protein DNA-binding protein  YP_002121473  decreased coverage  0.00246675  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0847  CDS  NC_011126  798019  798639  621  riboflavin synthase subunit alpha  YP_002121512  decreased coverage  8.49301e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0848  CDS  NC_011126  798647  799261  615  transcriptional regulator, TetR family  YP_002121513  decreased coverage  5.68716e-13  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0859  CDS  NC_011126  809112  809402  291  chaperonin Cpn10  YP_002121524  decreased coverage  2.06391e-11  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0860  CDS  NC_011126  809435  811066  1632  chaperonin GroEL  YP_002121525  decreased coverage  1.23725e-08  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0910  CDS  NC_011126  857729  858784  1056  loricrin  YP_002121575  decreased coverage  1.84739e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0985  CDS  NC_011126  922182  923687  1506  drug resistance transporter, EmrB/QacA subfamily  YP_002121649  decreased coverage  2.98388e-10  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_0992  CDS  NC_011126  930279  930866  588  protein of unknown function DUF88  YP_002121656  decreased coverage  1.04741e-08  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1012  CDS  NC_011126  946277  948841  2565  translation initiation factor IF-2  YP_002121676  decreased coverage  8.97592e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1017  CDS  NC_011126  951958  952386  429  H+transporting two-sector ATPase B/B' subunit  YP_002121681  decreased coverage  1.43879e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1019  CDS  NC_011126  952957  955041  2085  ribonuclease R  YP_002121683  decreased coverage  1.44778e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1047  CDS  NC_011126  977869  979032  1164  C4-dicarboxylate transporter/malic acid transport protein  YP_002121711  decreased coverage  4.18188e-10  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1056  CDS  NC_011126  985463  987262  1800  leucyl-tRNA synthetase  YP_002121720  decreased coverage  3.73347e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1067  CDS  NC_011126  995503  996453  951  glycosyl transferase family 9  YP_002121731  decreased coverage  7.16573e-12  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1068  CDS  NC_011126  996464  996892  429  hypothetical protein  YP_002121732  decreased coverage  2.27849e-13  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1103  CDS  NC_011126  1021245  1022606  1362  thiamine biosynthesis protein ThiC  YP_002121767  decreased coverage  0.000141621  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1187  CDS  NC_011126  1097907  1098497  591  protein of unknown function DUF205  YP_002121850  decreased coverage  0.000281015  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1188  CDS  NC_011126  1098499  1099089  591  phospholipase D/Transphosphatidylase  YP_002121851  decreased coverage  7.88745e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1189  CDS  NC_011126  1099086  1100339  1254  phosphoribosylamine/glycine ligase  YP_002121852  decreased coverage  7.04507e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1317  CDS  NC_011126  1224372  1225916  1545  protein of unknown function DUF1703  YP_002121980  decreased coverage  0.00550459  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1388  CDS  NC_011126  1299573  1302809  3237  acriflavin resistance protein  YP_002122051  decreased coverage  0.00288524  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1405  CDS  NC_011126  1319290  1322658  3369  diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  YP_002122068  decreased coverage  5.20478e-06  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1432  CDS  NC_011126  1350125  1351390  1266  isocitrate/isopropylmalate dehydrogenase  YP_002122095  decreased coverage  1.02242e-10  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1441  CDS  NC_011126  1360945  1363410  2466  Polynucleotide adenylyltransferase region  YP_002122104  decreased coverage  0.000556215  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1444  CDS  NC_011126  1365993  1367921  1929  hypothetical protein  YP_002122107  decreased coverage  9.1004e-05  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1449  CDS  NC_011126  1371206  1371871  666  glutaredoxin-like domain protein  YP_002122111  decreased coverage  1.03791e-08  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1472  CDS  NC_011126  1390797  1391252  456  hypothetical protein  YP_002122134  decreased coverage  0.00198336  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1473  CDS  NC_011126  1391305  1392789  1485  hypothetical protein  YP_002122135  decreased coverage  0.00085768  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
-
 
HY04AAS1_1509  CDS  NC_011126  1423206  1423394  189  zinc finger CDGSH-type domain protein  YP_002122170  decreased coverage  6.55444e-13  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1536  CDS  NC_011126  1451996  1454566  2571  alanyl-tRNA synthetase  YP_002122197  decreased coverage  2.7092e-07  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1612  CDS  NC_011126  1529552  1533157  3606  DNA polymerase III, alpha subunit  YP_002122271  decreased coverage  0.00506055  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_1631  CDS  NC_011126  1550560  1551567  1008  Alcohol dehydrogenase GroES domain protein  YP_002122290  decreased coverage  2.05329e-09  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_R0009  tRNA  NC_011126  127010  127083  74  tRNA-Arg    decreased coverage  1.52408e-14  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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HY04AAS1_R0012  tRNA  NC_011126  203060  203132  73  tRNA-Arg    decreased coverage  2.02424e-14  n/a    Hydrogenobaculum sp. Y04AAS1  Bacteria 
 
 
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