64 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Lferr_0001  CDS  NC_011206  252  1610  1359  chromosomal replication initiator protein DnaA  YP_002218470  hitchhiker  0.000132407  decreased coverage  0.000453889  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0002  CDS  NC_011206  1894  2991  1098  DNA polymerase III, beta subunit  YP_002218471  decreased coverage  3.18907e-05  decreased coverage  0.000394754  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0003  CDS  NC_011206  2993  4045  1053  DNA replication and repair protein RecF  YP_002218472  hitchhiker  0.00329262  decreased coverage  0.000397503  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0004  CDS  NC_011206  4042  6447  2406  DNA gyrase, B subunit  YP_002218473  normal  0.0231697  decreased coverage  0.000608059  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0058  CDS  NC_011206  62103  63200  1098  quinolinate synthetase  YP_002218527  decreased coverage  0.000714365  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0306  CDS  NC_011206  292020  292952  933  transcriptional regulator, LysR family  YP_002218767  normal  0.0196114  decreased coverage  2.63412e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0307  CDS  NC_011206  293188  294030  843  hypothetical protein  YP_002218768  decreased coverage  2.84732e-05  decreased coverage  6.57786e-06  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0308  CDS  NC_011206  294198  294512  315  transposase, IS4  YP_002218769  hitchhiker  0.00145188  decreased coverage  1.98477e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0309  CDS  NC_011206  294634  295953  1320  hypothetical protein  YP_002218770  normal  0.0471635  decreased coverage  3.16331e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0311  CDS  NC_011206  296660  297790  1131  lipopolysaccharide heptosyltransferase II  YP_002218772  normal  decreased coverage  2.8657e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0312  CDS  NC_011206  297792  298556  765  hypothetical protein  YP_002218773  normal  decreased coverage  2.26241e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0313  CDS  NC_011206  298560  299945  1386  FAD linked oxidase domain protein  YP_002218774  normal  decreased coverage  3.16331e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0379  CDS  NC_011206  354275  355438  1164  cell division protein FtsZ  YP_002218840  decreased coverage  0.000173126  normal  0.037859  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0494  CDS  NC_011206  467781  469880  2100  elongation factor G  YP_002218955  decreased coverage  0.00353597  hitchhiker  1.39334e-08  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0512  CDS  NC_011206  477884  478408  525  50S ribosomal protein L6  YP_002218973  decreased coverage  0.000124699  unclonable  1.61683e-11  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0513  CDS  NC_011206  478427  478780  354  50S ribosomal protein L18  YP_002218974  decreased coverage  0.00333829  unclonable  1.49151e-11  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0537  CDS  NC_011206  493099  493842  744  glutaredoxin-family domain protein  YP_002218998  decreased coverage  1.48652e-08  unclonable  3.01239e-11  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0538  CDS  NC_011206  493978  495096  1119  phosphoserine phosphatase SerB  YP_002218999  decreased coverage  1.17789e-07  unclonable  3.04475e-11  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0686  CDS  NC_011206  640751  641200  450  hypothetical protein  YP_002219144  decreased coverage  1.36633e-05  hitchhiker  8.90362e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0687  CDS  NC_011206  641234  641620  387  Rhodanese domain protein  YP_002219145  decreased coverage  1.11268e-05  hitchhiker  8.34379e-05  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0699  CDS  NC_011206  654620  654910  291  co-chaperonin GroES  YP_002219157  decreased coverage  1.27096e-08  unclonable  2.92135e-11  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0700  CDS  NC_011206  655038  655868  831  hypothetical protein  YP_002219158  decreased coverage  1.40392e-07  hitchhiker  9.02529e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0782  CDS  NC_011206  742221  744371  2151  Cytochrome-c oxidase  YP_002219239  decreased coverage  0.000788567  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0784  CDS  NC_011206  745070  745426  357  hypothetical protein  YP_002219241  decreased coverage  0.00308528  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0821  CDS  NC_011206  780433  780921  489  transcriptional regulator, BadM/Rrf2 family  YP_002219278  decreased coverage  0.000871851  normal  0.998171  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_0830  CDS  NC_011206  787135  788034  900  Patatin  YP_002219287  decreased coverage  0.00263851  normal  0.492745  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1035  CDS  NC_011206  1004829  1005101  273  histone family protein DNA-binding protein  YP_002219484  decreased coverage  5.57803e-06  hitchhiker  4.62139e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1036  CDS  NC_011206  1005444  1007012  1569  hypothetical protein  YP_002219485  decreased coverage  0.0013265  hitchhiker  5.82323e-07  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1556  CDS  NC_011206  1517245  1518033  789  Tetratricopeptide TPR_2 repeat protein  YP_002219985  decreased coverage  2.09745e-08  hitchhiker  1.03642e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1631  CDS  NC_011206  1597708  1597965  258  hypothetical protein  YP_002220060  decreased coverage  1.95903e-08  decreased coverage  1.16544e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1632  CDS  NC_011206  1598231  1599355  1125  fatty acid desaturase  YP_002220061  hitchhiker  4.12854e-05  decreased coverage  1.82174e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1650  CDS  NC_011206  1620838  1621284  447  hypothetical protein  YP_002220079  decreased coverage  4.43475e-08  normal  0.043655  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1735  CDS  NC_011206  1708170  1709411  1242  molybdenum cofactor synthesis domain protein  YP_002220164  decreased coverage  4.75702e-07  hitchhiker  0.000109125  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1737  CDS  NC_011206  1710151  1711968  1818  signal peptide peptidase SppA, 67K type  YP_002220166  hitchhiker  0.000998332  decreased coverage  8.52075e-06  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1874  CDS  NC_011206  1853994  1856342  2349  ribonuclease, Rne/Rng family  YP_002220302  decreased coverage  7.17737e-05  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1875  CDS  NC_011206  1856385  1857773  1389  cysteinyl-tRNA synthetase  YP_002220303  decreased coverage  2.29747e-05  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_1935  CDS  NC_011206  1924015  1926354  2340  TonB-dependent receptor  YP_002220363  decreased coverage  5.27842e-05  normal  0.699989  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2149  CDS  NC_011206  2133192  2134289  1098  NLP/P60 protein  YP_002220560  decreased coverage  5.21128e-05  hitchhiker  0.000892281  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2150  CDS  NC_011206  2134790  2136046  1257  Carbohydrate-selective porin OprB  YP_002220561  decreased coverage  3.22479e-07  hitchhiker  0.00030161  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2170  CDS  NC_011206  2152716  2154059  1344  aromatic hydrocarbon degradation membrane protein  YP_002220581  decreased coverage  4.80388e-07  decreased coverage  6.85095e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2171  CDS  NC_011206  2154272  2155408  1137  Radical SAM domain protein  YP_002220582  hitchhiker  0.00159358  decreased coverage  6.51126e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2172  CDS  NC_011206  2155433  2156494  1062  geranylgeranyl reductase  YP_002220583  normal  0.328813  decreased coverage  7.12182e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2173  CDS  NC_011206  2156491  2157561  1071  biotin/lipoate A/B protein ligase  YP_002220584  normal  0.679039  decreased coverage  7.26509e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2174  CDS  NC_011206  2157610  2158731  1122  Radical SAM domain protein  YP_002220585  normal  decreased coverage  6.64459e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2175  CDS  NC_011206  2158816  2159253  438  glycine cleavage H-protein  YP_002220586  normal  decreased coverage  3.81106e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2176  CDS  NC_011206  2159309  2159707  399  hypothetical protein  YP_002220587  normal  decreased coverage  3.45804e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2177  CDS  NC_011206  2159704  2160150  447  glycine cleavage H-protein  YP_002220588  normal  decreased coverage  3.1691e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2178  CDS  NC_011206  2160219  2161130  912  CoB--CoM heterodisulfide reductase  YP_002220589  normal  decreased coverage  3.77327e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2179    NC_011206  2161123  2163897  2775      normal  0.787998  decreased coverage  1.27376e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2180  CDS  NC_011206  2161615  2162934  1320  hypothetical protein  YP_002220590  normal  decreased coverage  5.40383e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2181  CDS  NC_011206  2163056  2163370  315  transposase, IS4  YP_002220591  normal  decreased coverage  2.68633e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2203  CDS  NC_011206  2182313  2182744  432  hypothetical protein  YP_002220613  decreased coverage  0.000271806  normal  0.0358096  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2242  CDS  NC_011206  2214602  2215102  501  translation initiation factor IF-3  YP_002220652  decreased coverage  4.66118e-05  hitchhiker  0.00531509  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2243  CDS  NC_011206  2215137  2217071  1935  threonyl-tRNA synthetase  YP_002220653  decreased coverage  0.00594301  hitchhiker  0.00373508  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2263  CDS  NC_011206  2237339  2238784  1446  peptidase U62 modulator of DNA gyrase  YP_002220673  hitchhiker  0.00176392  decreased coverage  9.3987e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2264  CDS  NC_011206  2239109  2241955  2847  ribonucleoside-diphosphate reductase, alpha subunit  YP_002220674  normal  decreased coverage  1.98665e-09  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2436  CDS  NC_011206  2399025  2399330  306  lipoprotein, putative  YP_002220838  hitchhiker  2.43006e-09  decreased coverage  5.09211e-10  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2552  CDS  NC_011206  2525412  2527775  2364  TonB-dependent receptor  YP_002220953  decreased coverage  6.91451e-05  normal  0.635758  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2553  CDS  NC_011206  2527969  2528547  579  hypothetical protein  YP_002220954  decreased coverage  5.59785e-09  normal  0.790729  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2554  CDS  NC_011206  2528692  2528937  246  hypothetical protein  YP_002220955  decreased coverage  8.85735e-10  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2555  CDS  NC_011206  2528986  2529090  105  hypothetical protein  YP_002220956  decreased coverage  6.32237e-10  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2871  CDS  NC_011206  2855210  2855764  555  hypothetical protein  YP_002221262  decreased coverage  9.39154e-08  normal  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_2904  CDS  NC_011206  2884020  2884805  786  short chain dehydrogenase  YP_002221295  hitchhiker  0.000166666  decreased coverage  0.000436169  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
-
 
Lferr_R0052  rRNA  NC_011206  2669630  2671088  1459  16S ribosomal RNA    decreased coverage  0.000233456  normal  0.528995  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria 
 
 
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