41 decreased-coverage genes were found for selected organism/s



Page 1 of 1    << first  < prev  1  next >  last >>   


Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Memar_0135  CDS  NC_009051  123436  124629  1194  protein of unknown function DUF306, Meta and HslJ  YP_001046052  decreased coverage  0.000192889  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0275  CDS  NC_009051  252674  253531  858  ribose-phosphate pyrophosphokinase  YP_001046191  decreased coverage  1.78849e-07  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0473  CDS  NC_009051  457936  458949  1014  transcription initiation factor IIB  YP_001046388  decreased coverage  0.00145549  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0491  CDS  NC_009051  477034  478656  1623  putative manganese-dependent inorganic pyrophosphatase  YP_001046406  decreased coverage  0.00297824  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0568  CDS  NC_009051  552208  552621  414  30S ribosomal protein S19P  YP_001046483  decreased coverage  0.00394395  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0587  CDS  NC_009051  560677  562110  1434  preprotein translocase subunit SecY  YP_001046502  decreased coverage  0.00173275  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0616  CDS  NC_009051  586084  586560  477  methyl-coenzyme M reductase, protein D  YP_001046531  decreased coverage  6.56018e-07  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0623  CDS  NC_009051  592939  594957  2019  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein  YP_001046538  decreased coverage  0.00923433  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0630  CDS  NC_009051  601306  602199  894  hypothetical protein  YP_001046545  decreased coverage  0.00298214  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0649  CDS  NC_009051  622948  623775  828  molybdenum ABC transporter, periplasmic molybdate-binding protein  YP_001046564  decreased coverage  0.0057193  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0651  CDS  NC_009051  624589  625380  792  ABC transporter-related protein  YP_001046566  decreased coverage  0.000600585  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0652  CDS  NC_009051  625386  625832  447  hypothetical protein  YP_001046567  decreased coverage  0.002002  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0686  CDS  NC_009051  663580  663915  336  hypothetical protein  YP_001046601  decreased coverage  0.00170782  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0692  CDS  NC_009051  669983  671854  1872  hypothetical protein  YP_001046607  decreased coverage  0.000426787  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0717  CDS  NC_009051  695910  696563  654  multiple antibiotic resistance (MarC)-related protein  YP_001046632  decreased coverage  0.000442646  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0725  CDS  NC_009051  702466  703698  1233  hypothetical protein  YP_001046640  decreased coverage  0.00111805  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0728  CDS  NC_009051  706631  708313  1683  glycosyl transferase family protein  YP_001046643  decreased coverage  4.21548e-05  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0729  CDS  NC_009051  708326  708634  309  30S ribosomal protein S10P  YP_001046644  decreased coverage  0.000150109  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0754  CDS  NC_009051  732229  732501  273  hypothetical protein  YP_001046669  decreased coverage  0.00141702  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0756  CDS  NC_009051  733923  734678  756  molybdopterin-guanine dinucleotide biosynthesis protein B  YP_001046671  decreased coverage  0.00531369  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0758  CDS  NC_009051  736434  737348  915  phage integrase family protein  YP_001046673  decreased coverage  0.000222973  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0779  CDS  NC_009051  761031  761681  651  hypothetical protein  YP_001046694  decreased coverage  0.00509054  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0787  CDS  NC_009051  769326  770351  1026  magnesium and cobalt transport protein CorA  YP_001046702  decreased coverage  0.00324534  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0800  CDS  NC_009051  782446  783072  627  hypothetical protein  YP_001046715  decreased coverage  4.07993e-05  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0810  CDS  NC_009051  793972  794670  699  cytochrome c-type biogenesis protein CcmB  YP_001046725  decreased coverage  0.00450411  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0852  CDS  NC_009051  829148  830626  1479  argininosuccinate lyase  YP_001046767  decreased coverage  0.00169507  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0868  CDS  NC_009051  844929  846293  1365  putative transcriptional regulator  YP_001046783  decreased coverage  0.00767556  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0883  CDS  NC_009051  861226  861801  576  methyltransferase type 11  YP_001046798  decreased coverage  0.00365145  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_0884  CDS  NC_009051  861888  864311  2424  PAS/PAC sensor signal transduction histidine kinase  YP_001046799  decreased coverage  0.00331872  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1003  CDS  NC_009051  989466  990935  1470  radical SAM domain-containing protein  YP_001046918  decreased coverage  0.00934778  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1017  CDS  NC_009051  1001189  1002415  1227  DNA primase  YP_001046932  decreased coverage  1.25656e-06  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1057  CDS  NC_009051  1043458  1044021  564  phosphatidate cytidylyltransferase  YP_001046972  decreased coverage  7.74993e-08  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1058  CDS  NC_009051  1044535  1044903  369  hypothetical protein  YP_001046973  decreased coverage  4.76833e-08  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1071  CDS  NC_009051  1059283  1059786  504  acetolactate synthase, small subunit  YP_001046986  decreased coverage  0.00570032  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1171  CDS  NC_009051  1152429  1153739  1311  hypothetical protein  YP_001047084  decreased coverage  1.57605e-06  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1287  CDS  NC_009051  1268815  1270266  1452  7-cyano-7-deazaguanine tRNA-ribosyltransferase  YP_001047199  decreased coverage  0.000579108  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1288  CDS  NC_009051  1270272  1270832  561  AMMECR1 domain-containing protein  YP_001047200  decreased coverage  0.00113527  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1437  CDS  NC_009051  1429239  1429733  495  hypothetical protein  YP_001047348  decreased coverage  5.23334e-05  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_1489  CDS  NC_009051  1488803  1489747  945  SMF family protein  YP_001047400  decreased coverage  2.74603e-06  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_2007  CDS  NC_009051  1993834  1995729  1896  ATPase  YP_001047915  decreased coverage  0.00148189  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Memar_R0010  tRNA  NC_009051  458962  459033  72  tRNA-Ala    decreased coverage  0.000307763  n/a    Methanoculleus marisnigri JR1  Archaea 
 
 
-
 
Page 1 of 1    << first  < prev  1  next >  last >>